FvH4_2g32260

UPF0587 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005449
Physical Location & Seq
Reverse (-)
24509022 .. 24510054
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g32260.t1

Sequence Viewer

Length: 480 bp
ATGGTGCGTTTCTTTCTTATGATCATGGCCAATCTCCAGGGCGTCACTAACCTTGAGCCCCAAGGTGGCTTCAAGGACCCCGACTTTACCTATCTCTTCAAGTTGAAATGTGAGGGCTGTGGAGAGCTGACCGAGAAAGAAGCTGCTGTGAGATTGAGCCTGAGCAAACGCAAGGGTGCCCCTGATCTTGTGCGGAAGTGCAAGTTCTGTGAGAGGGAAGGGAGTGTGACAATGATGCCAGAATGTTGTAAACCACTGACCAAGGAAGGGGTTTTTCACCCCTTGATGATGTTCGACTGCAAGGGCTATGAGCCTGTGGATTTCGTTTTCGGTGGTAGGTGGAAGGTTGAATCTGTGGCAGGGAAAACTTACGACAACGTTAACTTGTCGAAAGGGGAATTCGCTGAATACGATGAGAGTGGAGAGCTTCTGGTTAGGATTTCCAGTCTCCATTCTAGTTTTAATGTTTGGAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

160

Amino Acids

18.0

Weight (kDa)

6.16

Isoelectric Point (pI)

28.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CXXC_Zn-b_euk PF05907 6 - 154 7.3e-39 CXXC motif containing zinc binding protein, eukaryotic
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 193
AclI AACGTT 1 cut(s) 378
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 65, 267
AgsI TTSAA 4 cut(s) 73, 100, 106, 350
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 3 cut(s) 127, 143, 427
AluI AGCT 3 cut(s) 127, 143, 427
Alw26I GTCTC 1 cut(s) 452
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 181
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 1 cut(s) 176
BanII GRGCYC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 130
BciT130I CCWGG 1 cut(s) 38
BclI TGATCA 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 1 cut(s) 456
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 2 cut(s) 78, 178
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 20
Bpu10I CCTNAGC 1 cut(s) 161
BpuEI CTTGAG 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 37, 61, 261
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 267
Bse1I ACTGG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 3 cut(s) 37, 61, 261
BseLI CCNNNNNNNGG 2 cut(s) 65, 267
BseMII CTCAG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 65, 267
BsmAI GTCTC 1 cut(s) 452
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 2 cut(s) 60, 181
Bsp143I GATC 2 cut(s) 21, 184
BspACI CCGC 1 cut(s) 193
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 78, 178
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 3 cut(s) 37, 61, 261
BssMI GATC 2 cut(s) 21, 184
BssNI GRCGYC 1 cut(s) 42
BssT1I CCWWGG 2 cut(s) 61, 261
Bst2UI CCWGG 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 161
BstKTI GATC 2 cut(s) 24, 187
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 2 cut(s) 21, 184
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 1 cut(s) 130
BsuRI GGCC 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 31
CviAII CATG 1 cut(s) 25
DdeI CTNAG 1 cut(s) 161
DpnI GATC 2 cut(s) 23, 186
DpnII GATC 2 cut(s) 21, 184
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 2 cut(s) 61, 261
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 2 cut(s) 61, 261
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 2 cut(s) 61, 261
FaeI CATG 1 cut(s) 28
FaiI YATR 3 cut(s) 20, 26, 309
FatI CATG 1 cut(s) 24
FbaI TGATCA 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 456
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 29
HgaI GACGC 1 cut(s) 31
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 1 cut(s) 28
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 2 cut(s) 350, 472
HpaI GTTAAC 1 cut(s) 382
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 2 cut(s) 251, 382
Hpy8I GTNNAC 2 cut(s) 251, 382
HpyAV CCTTC 3 cut(s) 212, 260, 337
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 2 cut(s) 201, 300
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 378
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 1 cut(s) 28
Ksp22I TGATCA 1 cut(s) 21
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 2 cut(s) 21, 184
LpnPI CCDG 9 cut(s) 23, 50, 173, 195, 252, 327, 345, 416, 457
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 225
MaeI CTAG 1 cut(s) 456
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 43, 226
MalI GATC 2 cut(s) 23, 186
MboI GATC 2 cut(s) 21, 184
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 2 cut(s) 60, 181
MlsI TGGCCA 1 cut(s) 29
MluCI AATT 1 cut(s) 398
MluNI TGGCCA 1 cut(s) 29
MnlI CCTC 2 cut(s) 106, 207
Mox20I TGGCCA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 29
MseI TTAA 2 cut(s) 381, 462
Msp20I TGGCCA 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
NdeII GATC 2 cut(s) 21, 184
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 78, 178
NmuCI GTSAC 2 cut(s) 43, 226
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PfeI GAWTC 2 cut(s) 350, 472
PkrI GCNGC 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 76
Psp1406I AACGTT 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 2 cut(s) 78, 178
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
SaqAI TTAA 2 cut(s) 381, 462
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 21, 184
Sau96I GGNCC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 60, 181
SetI ASST 9 cut(s) 54, 67, 92, 129, 145, 341, 348, 381, 429
SfaNI GCATC 1 cut(s) 225
SinI GGWCC 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 398
SsiI CCGC 1 cut(s) 193
SspMI CTAG 1 cut(s) 456
StyD4I CCNGG 1 cut(s) 36
StyI CCWWGG 2 cut(s) 61, 261
TaiI ACGT 1 cut(s) 381
TaqI TCGA 2 cut(s) 294, 389
TaqII GACCGA 1 cut(s) 146
TasI AATT 1 cut(s) 398
TfiI GAWTC 2 cut(s) 350, 472
Tru1I TTAA 2 cut(s) 381, 462
Tru9I TTAA 2 cut(s) 381, 462
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 2 cut(s) 43, 226
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 43, 226
TspRI CASTG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 398
XspI CTAG 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.