Rh6DG495000

UPF0587 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0005449
Physical Location & Seq
Reverse (-)
65346767 .. 65349498
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG495000.1

Sequence Viewer

Length: 537 bp
ATGGTGCTCTTCGCGCTACAGATAACGGCCGAGCTCGAAAACCTCACTAATCTTCAGCCCGGGGGAGGCTGCGATGATCCAGAATTTACCTATCTCTTCAAGTTGAAATGTCAGAGCTGTGGTGAGCCGACTCAGAAGGAAACTGCTTTGAGCTTGAGCGAGTCTGTTCCTCTTCCGGTGGGCAAGGGAACCACTAATCTCATTCAGAAGTTGTGTGGTGATTTGCATCTTTTCTCCTTGCAGTGCAAGTTTTGTGGCAGGGAAGGAACCGTAACAATGATGCCTGGTCGTGGTCGACCATTGACTGAGGAGTTAAGTGAAGCAGGGAAGTTTGCCCCCTTGATGGTGTTCGAATGCAGGGGTTATGAGCCTGTGGATTATGTCTTTGGTGGCGGGTGGAAAGTTCAATCTTTGGCTGGGACAACATTTGACGATGTTGACTTGTCAGAGGGGGAGTTTGCTGAATATGATGAGAAGGGAGAGTGCCCAGTTATGATCTCCAAGCCCTCTTCTACTTTTGTCGTGCTGAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

178

Amino Acids

19.43

Weight (kDa)

4.59

Isoelectric Point (pI)

43.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CXXC_Zn-b_euk PF05907 5 - 173 2.2e-45 CXXC motif containing zinc binding protein, eukaryotic
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 295
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 393
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 38
AfiI CCNNNNNNNGG 3 cut(s) 65, 290, 343
AgsI TTSAA 3 cut(s) 100, 106, 407
AjnI CCWGG 1 cut(s) 283
AluBI AGCT 3 cut(s) 34, 117, 153
AluI AGCT 3 cut(s) 34, 117, 153
Alw21I GWGCWC 2 cut(s) 9, 36
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 60, 61
AsuHPI GGTGA 2 cut(s) 134, 230
AsuII TTCGAA 1 cut(s) 351
AvaI CYCGRG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 488
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 9, 36
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 337
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 285
BcnI CCSGG 2 cut(s) 60, 61
BfaI CTAG 1 cut(s) 535
BfmI CTRYAG 1 cut(s) 17
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 60, 61, 285
BmeT110I CYCGRG 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 190, 268
BmrFI CCNGG 3 cut(s) 60, 61, 285
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 235, 270
BmuI ACTGGG 1 cut(s) 482
Bpu14I TTCGAA 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 60, 61
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 59, 60
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 290, 343
Bse1I ACTGG 1 cut(s) 488
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 59, 60
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 65, 290, 343
BseMII CTCAG 2 cut(s) 146, 297
BseNI ACTGG 1 cut(s) 488
BseRI GAGGAG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 488
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 9, 36
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 2 cut(s) 60, 176
BslFI GGGAC 1 cut(s) 433
BslI CCNNNNNNNGG 3 cut(s) 65, 290, 343
BsmFI GGGAC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 351
Bsp1286I GDGCHC 3 cut(s) 9, 36, 488
Bsp143I GATC 2 cut(s) 76, 495
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 145, 298
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 190, 268
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 351
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 2 cut(s) 59, 60
BssMI GATC 2 cut(s) 76, 495
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 271
Bst6I CTCTTC 4 cut(s) 14, 101, 177, 514
BstBI TTCGAA 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 132, 306
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 79, 498
BstMBI GATC 2 cut(s) 76, 495
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 3 cut(s) 58, 59, 283
BstSFI CTRYAG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 488
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 56
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 87
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 16
Cfr9I CCCGGG 1 cut(s) 59
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
DdeI CTNAG 2 cut(s) 132, 306
DpnI GATC 2 cut(s) 78, 497
DpnII GATC 2 cut(s) 76, 495
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 4 cut(s) 14, 101, 177, 514
EarI CTCTTC 4 cut(s) 14, 101, 177, 514
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 36
FaiI YATR 4 cut(s) 366, 381, 468, 494
FaqI GGGAC 1 cut(s) 433
FauI CCCGC 1 cut(s) 386
FblI GTMKAC 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 535
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 70
GsaI CCCAGC 1 cut(s) 420
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 60, 176
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 2 cut(s) 296, 439
HindII GTYRAC 2 cut(s) 296, 439
HinfI GANTC 2 cut(s) 130, 161
HpaII CCGG 2 cut(s) 60, 176
HphI GGTGA 2 cut(s) 134, 230
Hpy166II GTNNAC 2 cut(s) 296, 439
Hpy188I TCNGA 4 cut(s) 114, 135, 207, 448
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 296, 439
HpyAV CCTTC 3 cut(s) 130, 257, 469
HpyCH4III ACNGT 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 226, 241, 246, 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 132, 306
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 76, 495
LguI GCTCTTC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 2 cut(s) 235, 270
MaeI CTAG 1 cut(s) 535
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 78, 497
MboI GATC 2 cut(s) 76, 495
MboII GAAGA 4 cut(s) 44, 88, 164, 501
MhlI GDGCHC 3 cut(s) 9, 36, 488
MluCI AATT 1 cut(s) 83
MlyI GAGTC 2 cut(s) 124, 170
MnlI CCTC 6 cut(s) 53, 59, 180, 301, 442, 517
MseI TTAA 1 cut(s) 314
MspI CCGG 2 cut(s) 60, 176
MspR9I CCNGG 3 cut(s) 60, 61, 285
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 1 cut(s) 285
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 2 cut(s) 60, 61
NdeII GATC 2 cut(s) 76, 495
NlaIV GGNNCC 2 cut(s) 190, 268
NmeAIII GCCGAG 1 cut(s) 55
NspV TTCGAA 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 359
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 2 cut(s) 124, 169
PpsI GAGTC 2 cut(s) 124, 169
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 190, 268
SacI GAGCTC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 2 cut(s) 76, 495
SchI GAGTC 2 cut(s) 124, 170
ScrFI CCNGG 3 cut(s) 60, 61, 285
SduI GDGCHC 3 cut(s) 9, 36, 488
SetI ASST 5 cut(s) 36, 45, 92, 119, 155
SfaNI GCATC 2 cut(s) 235, 270
SfcI CTRYAG 1 cut(s) 17
SfuI TTCGAA 1 cut(s) 351
SmaI CCCGGG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 393
SspMI CTAG 1 cut(s) 535
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 58, 59, 283
TaaI ACNGT 1 cut(s) 271
TaqI TCGA 3 cut(s) 36, 295, 351
TasI AATT 1 cut(s) 83
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 1 cut(s) 248
TseI GCWGC 1 cut(s) 69
TspMI CCCGGG 1 cut(s) 59
TspRI CASTG 1 cut(s) 248
XapI RAATTY 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 295
XspI CTAG 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.