Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005449

Physical Location & Seq

Genomic Coordinates Reverse (-)

3533412 .. 3535332

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTGAAATTCCTGCTTCAGATCACAGCGGAACTCGAGAACCTGACCGACCTCCAGCCTCAGGACGGCTGCGACGACACCAACTTCTCCTACCTCTTCAAGCTGAAATGTGAGAGGTGTGGAGAGGTGAGCCAGAGAGAAACTTGTGTGAGCTTGAACGAGACTGTTCCCCTTCCAGTCGGCAAGGGAACAGCCAATCTCATCCAGAAGTGCAAGTTTTGTGAGCGCGATGGAATGATTATGATGCACCCAGGTCGTGGTAAGCCACTGACGCAGGAAACAAGTGAAGCCAGGCAGTTTGCCCCATTGATGATCTTCGAGTGCAGGGGTTATGAACCTGTGGACTTTGTTTTTGGTGGTGGCTGGAAAGCTAAGTCTTTGAGTGGCACAAATTTTGAGAACATTGACTTGTCGGCTGGGGAGTTTGTTGAATATGATGAGAAGGGAGAGTGCCCAGTTATGATTTCTAATCTTCAGGCTGCTTTTGTGGTGAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF866

Protein Analysis

167

Amino Acids

18.48

Weight (kDa)

4.72

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32930 AT4G32930
fragaria_vesca	FvH4_2g32260 FvH4_2g32280
malus_domestica	MD08G1073900.v1.1
prunus_persica	Prupe.1G415500_v2.0.a1
pyrus_communis	pycom15g05830
rosa_chinensis	RchiOBHm_Chr6g0310421 RchiOBHm_Chr6g0310431
rosa_laevigata	RLG00000010483
rosa_multiflora	Rmu_sc0000439.1_g000001 Rmu_sc0009072.1_g000007 Rmu_sc0009072.1_g000008 Rmu_sc0020729.1_g000016 Rmu_sc0020729.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158530
rosa_rugosa	Rorug06G0380100 Rorug06G0380200 Rorug06G0380300
rosa_samantha	Rh6AG494100 Rh6AG494200 Rh6BG503800 Rh6BG504000 Rh6CG509000 Rh6CG509200 Rh6DG495000 Rh6DG495200
rosa_wichuraiana	Rw6G042990 Rw6G043000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccII	CGCG	1 cut(s)	228
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	2 cut(s)	8, 391
AcuI	CTGAAG	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	61, 65, 257
AgsI	TTSAA	3 cut(s)	100, 157, 431
AjnI	CCWGG	2 cut(s)	250, 290
AluBI	AGCT	3 cut(s)	103, 153, 371
AluI	AGCT	3 cut(s)	103, 153, 371
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	69, 479
ApoI	RAATTY	2 cut(s)	8, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspLEI	GCGC	1 cut(s)	228
AsuHPI	GGTGA	2 cut(s)	16, 139
AvaI	CYCGRG	1 cut(s)	35
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	56, 466
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	2 cut(s)	252, 292
BcoDI	GTCTC	1 cut(s)	155
BisI	GCNGC	2 cut(s)	70, 480
BlsI	GCNGC	2 cut(s)	71, 481
Bme1390I	CCNGG	2 cut(s)	252, 292
BmeT110I	CYCGRG	1 cut(s)	35
BmrFI	CCNGG	2 cut(s)	252, 292
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	234
BmuI	ACTGGG	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 65, 257
Bse1I	ACTGG	2 cut(s)	176, 455
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	252, 292
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	3 cut(s)	61, 65, 257
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	2 cut(s)	176, 455
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	56, 466
BseYI	CCCAGC	1 cut(s)	416
BsgI	GTGCAG	1 cut(s)	343
Bsh1236I	CGCG	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	35
BslI	CCNNNNNNNGG	3 cut(s)	61, 65, 257
BsmAI	GTCTC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	2 cut(s)	21, 312
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	176, 455
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	21, 312
Bst2UI	CCWGG	2 cut(s)	252, 292
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	101
BstDEI	CTNAG	3 cut(s)	60, 372, 498
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	24, 315
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	2 cut(s)	21, 312
BstMWI	GCNNNNNNNGC	1 cut(s)	271
BstNI	CCWGG	2 cut(s)	252, 292
BstSCI	CCNGG	2 cut(s)	250, 290
BstSLI	GKGCMC	1 cut(s)	455
BstUI	CGCG	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	56, 466
Bsu36I	CCTNAGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	266
CfoI	GCGC	1 cut(s)	228
CseI	GACGC	1 cut(s)	280
DdeI	CTNAG	3 cut(s)	60, 372, 498
DpnI	GATC	2 cut(s)	23, 314
DpnII	GATC	2 cut(s)	21, 312
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	458
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	250, 290
FaiI	YATR	4 cut(s)	242, 333, 435, 461
Fnu4HI	GCNGC	2 cut(s)	70, 480
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	2 cut(s)	70, 480
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	2 cut(s)	70, 480
GsaI	CCCAGC	1 cut(s)	420
GsuI	CTGGAG	1 cut(s)	38
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	1 cut(s)	228
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HphI	GGTGA	2 cut(s)	16, 139
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	37, 62, 205
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	182, 436
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	3 cut(s)	213, 247, 324
HpyF10VI	GCNNNNNNNGC	1 cut(s)	271
HpyF3I	CTNAG	3 cut(s)	60, 372, 498
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	21, 312
Lsp1109I	GCAGC	2 cut(s)	56, 466
LweI	GCATC	1 cut(s)	234
MalI	GATC	2 cut(s)	23, 314
MboI	GATC	2 cut(s)	21, 312
MboII	GAAGA	3 cut(s)	88, 307, 464
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	2 cut(s)	8, 391
MnlI	CCTC	5 cut(s)	62, 69, 104, 108, 118
MspA1I	CMGCKG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	252, 292
MvaI	CCWGG	2 cut(s)	252, 292
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	1 cut(s)	271
NdeII	GATC	2 cut(s)	21, 312
PaeR7I	CTCGAG	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	71, 481
Psp6I	CCWGG	2 cut(s)	250, 290
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	2 cut(s)	250, 290
SatI	GCNGC	2 cut(s)	70, 480
Sau3AI	GATC	2 cut(s)	21, 312
ScrFI	CCNGG	2 cut(s)	252, 292
SduI	GDGCHC	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	234
Sfr274I	CTCGAG	1 cut(s)	35
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	8, 391
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	250, 290
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	36, 318
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	2 cut(s)	8, 391
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	2 cut(s)	69, 479
TspDTI	ATGAA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	257
XapI	RAATTY	2 cut(s)	8, 391
XhoI	CTCGAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.