Rh6BG504000

UPF0587 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005449
Physical Location & Seq
Forward (+)
70267673 .. 70268830
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG504000.1

Sequence Viewer

Length: 498 bp
ATGGTACGCTTCTTGCTTCAGATCAGGGCCAAACTCCAGAGCCTCACGAACCTTCAGCCCCAAGGAGGCTGCAAGGACCCCGACTTTACCTACCTCTTCAAGCTGAAATGTGAGGGCTGCGGAGAGCTAAGCGAGAAAGAAGCTGGTGTGAGATTGAACCTGGGCAAACGCAAGGGTGCCCCTGATCTTGTTCGGAAGTGCAAGTTTTGTGAGAGGGAAGGGAGTGTGAGAATGATGCCAGAACATAATAGACCCCTGACCCAGACAGGGGTTTATTGCCCCTTGATGATGTTCGACTGCAAGGGTTATGAGCCTGTGGATTTCGTTTTCAGTGGTGGGTGGAAGGTTGAATCTGTGGCAGGGACAACTTTTGACAATGTTGACTTGTCGAAGGGGAAGTTTGCTGAGTACGATGAGAGGGGAGAGCGTCCAGTTAAGATTTCCAATCTCCATGCTACTTTTACTGTTCTTAGGCCTGGATATACATGTAGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

165

Amino Acids

18.74

Weight (kDa)

8.91

Isoelectric Point (pI)

33.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CXXC_Zn-b_euk PF05907 6 - 154 5.7e-40 CXXC motif containing zinc binding protein, eukaryotic
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 2 cut(s) 6, 410
AfiI CCNNNNNNNGG 3 cut(s) 65, 267, 268
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 3 cut(s) 100, 157, 350
AjnI CCWGG 2 cut(s) 159, 475
AluBI AGCT 3 cut(s) 103, 127, 143
AluI AGCT 3 cut(s) 103, 127, 143
AoxI GGCC 2 cut(s) 27, 473
ApeKI GCWGC 2 cut(s) 69, 117
AspS9I GGNCC 2 cut(s) 27, 76
AvaII GGWCC 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 56, 104
BciT130I CCWGG 2 cut(s) 161, 477
BisI GCNGC 2 cut(s) 70, 118
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 2 cut(s) 71, 119
Bme1390I CCNGG 2 cut(s) 161, 477
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 2 cut(s) 27, 76
BmiI GGNNCC 2 cut(s) 78, 178
BmrFI CCNGG 2 cut(s) 161, 477
BmsI GCATC 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 61, 160
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 267, 268
Bse1I ACTGG 1 cut(s) 431
BseBI CCWGG 2 cut(s) 161, 477
BseDI CCNNGG 2 cut(s) 61, 160
BseLI CCNNNNNNNGG 3 cut(s) 65, 267, 268
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 2 cut(s) 56, 104
BshFI GGCC 2 cut(s) 29, 475
BshNI GGYRCC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 65, 267, 268
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 2 cut(s) 29, 475
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 21, 184
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 1 cut(s) 120
BspANI GGCC 2 cut(s) 29, 475
BspCNI CTCAG 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 78, 178
BspT107I GGYRCC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 2 cut(s) 61, 160
BssMI GATC 2 cut(s) 21, 184
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 2 cut(s) 161, 477
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 3 cut(s) 128, 405, 470
BstKTI GATC 2 cut(s) 24, 187
BstMBI GATC 2 cut(s) 21, 184
BstNI CCWGG 2 cut(s) 161, 477
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 2 cut(s) 159, 475
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 56, 104
BsuRI GGCC 2 cut(s) 29, 475
BtsIMutI CAGTG 1 cut(s) 337
Cfr13I GGNCC 2 cut(s) 27, 76
CseI GACGC 1 cut(s) 416
Csp6I GTAC 2 cut(s) 5, 409
CviAII CATG 2 cut(s) 452, 486
CviQI GTAC 2 cut(s) 5, 409
DdeI CTNAG 3 cut(s) 128, 405, 470
DpnI GATC 2 cut(s) 23, 186
DpnII GATC 2 cut(s) 21, 184
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 159, 475
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 2 cut(s) 455, 489
FaiI YATR 5 cut(s) 246, 309, 453, 483, 487
FaqI GGGAC 1 cut(s) 376
FatI CATG 2 cut(s) 451, 485
Fnu4HI GCNGC 2 cut(s) 70, 118
Fsp4HI GCNGC 2 cut(s) 70, 118
GluI GCNGC 2 cut(s) 70, 118
GsuI CTGGAG 1 cut(s) 20
HaeIII GGCC 2 cut(s) 29, 475
HgaI GACGC 1 cut(s) 416
Hin1II CATG 2 cut(s) 455, 489
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 1 cut(s) 350
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 21, 195
Hpy188III TCNNGA 2 cut(s) 37, 46
Hpy8I GTNNAC 1 cut(s) 382
HpyAV CCTTC 4 cut(s) 62, 212, 337, 385
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 3 cut(s) 72, 201, 300
HpyF3I CTNAG 3 cut(s) 128, 405, 470
Hsp92II CATG 2 cut(s) 455, 489
Kzo9I GATC 2 cut(s) 21, 184
Lsp1109I GCAGC 2 cut(s) 56, 104
LweI GCATC 1 cut(s) 225
MalI GATC 2 cut(s) 23, 186
MboI GATC 2 cut(s) 21, 184
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 181
MnlI CCTC 6 cut(s) 53, 59, 104, 106, 207, 411
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 490
MspR9I CCNGG 2 cut(s) 161, 477
MvaI CCWGG 2 cut(s) 161, 477
NdeII GATC 2 cut(s) 21, 184
NlaIII CATG 2 cut(s) 455, 489
NlaIV GGNNCC 2 cut(s) 78, 178
NspI RCATGY 1 cut(s) 489
PceI AGGCCT 1 cut(s) 475
PciI ACATGT 1 cut(s) 485
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 2 cut(s) 71, 119
PpuMI RGGWCCY 1 cut(s) 76
PscI ACATGT 1 cut(s) 485
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 159, 475
PspGI CCWGG 2 cut(s) 159, 475
PspN4I GGNNCC 2 cut(s) 78, 178
PspPI GGNCC 2 cut(s) 27, 76
PspPPI RGGWCCY 1 cut(s) 76
RsaI GTAC 2 cut(s) 6, 410
RsaNI GTAC 2 cut(s) 5, 409
RseI CAYNNNNRTG 1 cut(s) 490
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 2 cut(s) 70, 118
Sau3AI GATC 2 cut(s) 21, 184
Sau96I GGNCC 2 cut(s) 27, 76
ScrFI CCNGG 2 cut(s) 161, 477
SduI GDGCHC 1 cut(s) 181
SetI ASST 9 cut(s) 54, 92, 96, 105, 129, 145, 162, 348, 494
SfaNI GCATC 1 cut(s) 225
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 490
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 1 cut(s) 120
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 2 cut(s) 159, 475
StyI CCWWGG 1 cut(s) 61
TaaI ACNGT 1 cut(s) 466
TaqI TCGA 2 cut(s) 294, 389
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 337
TseI GCWGC 2 cut(s) 69, 117
TspRI CASTG 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 76
XceI RCATGY 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.