Rmu_sc0000439.1_g000001

UPF0587 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000439.1
OG0005449
Physical Location & Seq
Reverse (-)
4352 .. 4960
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000439.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atggtgcgcttcttgcttcagatcagggccaaactccagagcctcactaaccttcagcccaaaggaggctgcaaggaccccgactttacctacctcttcaagctgaaatgtgagggctgcggagagctaagcgagaaagaagctggtgtgagattgaacctgggcaaacgcaagggtgcccctgatcttgttcggaagctgggactagaggtcgatctctgggttcccttctgttgtgacatgtgcatcgtccatcagtactttggtggctataacatcactgttgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

96

Amino Acids

10.8

Weight (kDa)

8.8

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AciI CCGC 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 65
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 2 cut(s) 100, 157
AhdI GACNNNNNGTC 1 cut(s) 209
AjnI CCWGG 1 cut(s) 159
AluBI AGCT 4 cut(s) 103, 127, 143, 199
AluI AGCT 4 cut(s) 103, 127, 143, 199
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 69, 117
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 27, 76
AvaII GGWCC 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 181
BanI GGYRCC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 56, 104
BccI CCATC 1 cut(s) 261
BciT130I CCWGG 1 cut(s) 161
BfaI CTAG 1 cut(s) 206
BisI GCNGC 2 cut(s) 70, 118
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 2 cut(s) 71, 119
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 1 cut(s) 76
BmeRI GACNNNNNGTC 1 cut(s) 209
BmgT120I GGNCC 2 cut(s) 27, 76
BmiI GGNNCC 3 cut(s) 78, 178, 225
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 255
BpmI CTGGAG 1 cut(s) 20
Bpu1102I GCTNAGC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 65
BseSI GKGCMC 1 cut(s) 181
BseXI GCAGC 2 cut(s) 56, 104
BseYI CCCAGC 1 cut(s) 199
BshFI GGCC 1 cut(s) 29
BshNI GGYRCC 1 cut(s) 176
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 1 cut(s) 65
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 3 cut(s) 21, 184, 214
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 29
BspLI GGNNCC 3 cut(s) 78, 178, 225
BspT107I GGYRCC 1 cut(s) 176
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 3 cut(s) 21, 184, 214
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 3 cut(s) 24, 187, 217
BstMBI GATC 3 cut(s) 21, 184, 214
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 56, 104
BsuRI GGCC 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 279
CfoI GCGC 1 cut(s) 9
Cfr13I GGNCC 2 cut(s) 27, 76
Csp6I GTAC 1 cut(s) 259
CviAII CATG 1 cut(s) 241
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 1 cut(s) 128
DpnI GATC 3 cut(s) 23, 186, 216
DpnII GATC 3 cut(s) 21, 184, 214
DriI GACNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 101
Eam1105I GACNNNNNGTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 76
Eco57I CTGAAG 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 159
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 242, 273, 289
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 240
Fnu4HI GCNGC 2 cut(s) 70, 118
Fsp4HI GCNGC 2 cut(s) 70, 118
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 8
GluI GCNGC 2 cut(s) 70, 118
GsaI CCCAGC 1 cut(s) 203
GsuI CTGGAG 1 cut(s) 20
HaeIII GGCC 1 cut(s) 29
HhaI GCGC 1 cut(s) 9
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 21, 195
Hpy188III TCNNGA 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 62, 238
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 72, 246, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 1 cut(s) 7
Kzo9I GATC 3 cut(s) 21, 184, 214
LpnPI CCDG 8 cut(s) 10, 50, 129, 146, 173, 185, 195, 205
Lsp1109I GCAGC 2 cut(s) 56, 104
LweI GCATC 1 cut(s) 255
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 236
MalI GATC 3 cut(s) 23, 186, 216
MboI GATC 3 cut(s) 21, 184, 214
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 181
MnlI CCTC 5 cut(s) 53, 59, 104, 106, 202
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 3 cut(s) 21, 184, 214
NlaIII CATG 1 cut(s) 244
NlaIV GGNNCC 3 cut(s) 78, 178, 225
NmuCI GTSAC 1 cut(s) 236
NspI RCATGY 1 cut(s) 244
PciI ACATGT 1 cut(s) 240
PkrI GCNGC 2 cut(s) 71, 119
PpuMI RGGWCCY 1 cut(s) 76
PscI ACATGT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 76
Psp6I CCWGG 1 cut(s) 159
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 3 cut(s) 78, 178, 225
PspPI GGNCC 2 cut(s) 27, 76
PspPPI RGGWCCY 1 cut(s) 76
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SatI GCNGC 2 cut(s) 70, 118
Sau3AI GATC 3 cut(s) 21, 184, 214
Sau96I GGNCC 2 cut(s) 27, 76
ScaI AGTACT 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 181
SetI ASST 9 cut(s) 54, 92, 96, 105, 129, 145, 162, 201, 213
SfaNI GCATC 1 cut(s) 255
SinI GGWCC 1 cut(s) 76
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 213
TatI WGTACW 1 cut(s) 258
TscAI CASTG 1 cut(s) 286
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 2 cut(s) 69, 117
Tsp45I GTSAC 1 cut(s) 236
TspRI CASTG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 76
XceI RCATGY 1 cut(s) 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XspI CTAG 1 cut(s) 206
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.