Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003510

Physical Location & Seq

Genomic Coordinates Forward (+)

16186791 .. 16189123

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G33740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGAAGAAAACATCAACCAGAAGCCAAAGAGGAAGCAAAGGTATCAAAGGGAAGCATGTCCTGCAGATATGTGTTCTGCTTGGAGTATGCATTTGGTTAATCTATCAAGTGAAGTATTCTCATGATAAGAAGAAGGAATTTTATGAGAAAGATGTCGAGAAATCGACGGTGTTGTTGTCAGAGGTTGAAGATGGAGTGGTGAAGCTTGGGAGGAAAGATCTTCTTCCTAAGAATTATAACCAGAAGGAAAACGAGAAGCACGTGGAAGAGGATGAGGATGAAGAAGAGATCAGTCATGGAGGTGAAGAGAAGGAGAAGAAGAGTAAAGTAGAGAATGGTAATCATGAGGAGGAGGTGGAGAAAGACGAGGAAGAGGAAGTAGCTGAGGATGATGAAGAAGATAAGAATAAGCAAGGAGAGGAAGTAGCTGAGGAGGATGAGGAAGAGAACAAACATGAGGAAGATGAGATTGATGAACAAGATCAAAGTAAAAATGCTGGAGATACTGATAAGGATGATGAAACACTTGAAGAAGAGAAAGAGAGTGGAATGAGTGAGAACGATGAGAAAGAAAAAGAGACTAATCATGCAGATGAAATTGATATGACAGTTGATGAGGCACGCGAGGAGCATTACAAGGCTGATGATGCTTCCAGTGCTGTGTCTCATGAGTCTCGGATACTGAACACTGAGAAACTGAAAGAAAGTTCAAATGAAACAGCTCAAGAGAACAATCCCAATGGCGCTACGAGCGAGGTTGAGATCCAGAAGGAACCTGACTTGAAGTTAGGAGAAGCAGAAAACACCAATTTTGTGAACAAAACAACCACAGATGTGAAAGATGGTGACAGTGAATCATCCAGTTCTGAAACAAAAAGCGCGGTAACTGAATCACAAAGTGAAACAGTTAATGGCAATTCGACAGTAGCACTTTTTGAAGCGTCAGAGTTTGTGAAGAACGAAACAGAAATCATGAGAGATCGGAGTCAAGGAGATGGTGCACTGCCTGCAGGATTCTCTGAACCACAGCCGCCCGTCTTGGAACTTGAGAAAAACCGTAACGAATCTGATCCCGACATCCCTATTTCTGCTGACATTACCAACAAAGATTTCATTCAAGATGAGTCTAGGAACTCAACTTCAGAATCTTCTCTACTTGAAAACATCGCTGGCTCAAACACGACCGAGGTGAATGAGAATTCAAGGTCTGAAGGTGATGATGATGAATCAGGTGAAAAGGAAAGTTCAAACATTTTCTCCACAGAGCTAACAGAGGAGGCAGATAATACTTCCGGAACGTCGATTTCCCAAGAAGAGATGGATGCTCTCACTGATCCACAAACTCTTCCTGATATAAGAATAGAAGGCAATGAAGAAGATGAAGAGGAAGCAATTGGAGCAGAGAGAAAGAAACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

472

Amino Acids

52.86

Weight (kDa)

4.26

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33740 AT4G33740 AT4G33740 AT4G33740 AT4G33740
fragaria_vesca	FvH4_2g02971 FvH4_2g02971
malus_domestica	MD05G1108600.v1.1 MD10G1112600.v1.1
prunus_persica	Prupe.8G152300_v2.0.a1
pyrus_communis	pycom05g10460 pycom10g09740
rosa_chinensis	RchiOBHm_Chr1g0336871 RchiOBHm_Chr6g0247781
rosa_laevigata	RLG00000015180 RLG00000029328
rosa_multiflora	Rmu_sc0001983.1_g000010 Rmu_sc0004920.1_g000004 Rmu_sc0009569.1_g000009 Rmu_sc0018000.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433250 Rroxscaffold_4G00315280 Rroxscaffold_7G00213660
rosa_rugosa	Rorug01G0128600 Rorug05G0528500
rosa_samantha	Rh1AG149300 Rh1BG117700 Rh1CG140500 Rh1DG156600 Rh6AG043600 Rh6BG038300 Rh6CG037100 Rh6DG034200
rosa_wichuraiana	Rw1G012080 Rw6G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AccII	CGCG	2 cut(s)	624, 881
AccIII	TCCGGA	1 cut(s)	1292
AciI	CCGC	2 cut(s)	881, 1031
AclWI	GGATC	3 cut(s)	757, 1064, 1328
AcsI	RAATTY	2 cut(s)	137, 1198
AcuI	CTGAAG	2 cut(s)	1125, 1230
AcvI	CACGTG	1 cut(s)	262
AdeI	CACNNNGTG	1 cut(s)	899
AgsI	TTSAA	9 cut(s)	188, 530, 711, 784, 938, 1118, 1160, 1203, 1248
AjuI	GAANNNNNNNTTGG	2 cut(s)	1094, 1126
AleI	CACNNNNGTG	1 cut(s)	833
AluBI	AGCT	5 cut(s)	205, 383, 428, 722, 1267
AluI	AGCT	5 cut(s)	205, 383, 428, 722, 1267
Alw21I	GWGCWC	1 cut(s)	1003
Alw26I	GTCTC	3 cut(s)	572, 669, 678
Alw44I	GTGCAC	1 cut(s)	999
AlwI	GGATC	3 cut(s)	757, 1064, 1328
Aor13HI	TCCGGA	1 cut(s)	1292
ApaLI	GTGCAC	1 cut(s)	999
ApoI	RAATTY	2 cut(s)	137, 1198
AspLEI	GCGC	2 cut(s)	746, 881
AsuHPI	GGTGA	6 cut(s)	211, 314, 857, 1201, 1226, 1244
BaeGI	GKGCMC	1 cut(s)	1003
BbrPI	CACGTG	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	1003
BbvCI	CCTCAGC	2 cut(s)	384, 429
BccI	CCATC	4 cut(s)	185, 836, 989, 1312
BciVI	GTATCC	1 cut(s)	672
BcoDI	GTCTC	3 cut(s)	572, 669, 678
BfaI	CTAG	2 cut(s)	1128, 1417
BfmI	CTRYAG	2 cut(s)	62, 1008
BfoI	RGCGCY	1 cut(s)	747
BfuI	GTATCC	1 cut(s)	672
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	1 cut(s)	1031
BlsI	GCNGC	1 cut(s)	1032
BmiI	GGNNCC	1 cut(s)	774
BmsI	GCATC	2 cut(s)	637, 1312
BpmI	CTGGAG	1 cut(s)	519
Bpu10I	CCTNAGC	2 cut(s)	384, 429
BpuEI	CTTGAG	2 cut(s)	708, 1067
BsaAI	YACGTR	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	1185
BsaWI	WCCGGW	1 cut(s)	1292
BsaXI	ACNNNNNCTCC	4 cut(s)	408, 438, 1241, 1271
Bse1I	ACTGG	2 cut(s)	654, 861
Bse3DI	GCAATG	1 cut(s)	1375
BseAI	TCCGGA	1 cut(s)	1292
BseDI	CCNNGG	1 cut(s)	1185
BseGI	GGATG	8 cut(s)	277, 283, 394, 442, 520, 857, 1077, 1327
BseMI	GCAATG	1 cut(s)	1375
BseMII	CTCAG	3 cut(s)	375, 420, 681
BseNI	ACTGG	2 cut(s)	654, 861
BseRI	GAGGAG	5 cut(s)	362, 365, 446, 641, 1289
BseSI	GKGCMC	1 cut(s)	1003
Bsh1236I	CGCG	2 cut(s)	624, 881
Bsh1285I	CGRYCG	1 cut(s)	1185
BsiEI	CGRYCG	1 cut(s)	1185
BsiHKAI	GWGCWC	1 cut(s)	1003
BsiSI	CCGG	1 cut(s)	1293
BsmAI	GTCTC	3 cut(s)	572, 669, 678
Bsp1286I	GDGCHC	1 cut(s)	1003
Bsp13I	TCCGGA	1 cut(s)	1292
Bsp143I	GATC	7 cut(s)	217, 288, 481, 762, 979, 1069, 1333
BspACI	CCGC	2 cut(s)	881, 1031
BspCNI	CTCAG	3 cut(s)	376, 421, 682
BspEI	TCCGGA	1 cut(s)	1292
BspFNI	CGCG	2 cut(s)	624, 881
BspHI	TCATGA	4 cut(s)	121, 343, 667, 972
BspLI	GGNNCC	1 cut(s)	774
BspMAI	CTGCAG	2 cut(s)	66, 1012
BspPI	GGATC	3 cut(s)	757, 1064, 1328
BsrDI	GCAATG	1 cut(s)	1375
BsrI	ACTGG	2 cut(s)	654, 861
BssECI	CCNNGG	1 cut(s)	1185
BssMI	GATC	7 cut(s)	217, 288, 481, 762, 979, 1069, 1333
Bst4CI	ACNGT	6 cut(s)	169, 610, 851, 907, 925, 1058
BstAPI	GCANNNNNTGC	2 cut(s)	61, 1007
BstBAI	YACGTR	1 cut(s)	262
BstC8I	GCNNGC	3 cut(s)	622, 1008, 1171
BstDEI	CTNAG	4 cut(s)	228, 384, 429, 690
BstF5I	GGATG	8 cut(s)	277, 283, 394, 442, 520, 857, 1077, 1327
BstFNI	CGCG	2 cut(s)	624, 881
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	2 cut(s)	746, 881
BstKTI	GATC	7 cut(s)	220, 291, 484, 765, 982, 1072, 1336
BstMAI	GTCTC	3 cut(s)	572, 669, 678
BstMBI	GATC	7 cut(s)	217, 288, 481, 762, 979, 1069, 1333
BstMCI	CGRYCG	1 cut(s)	1185
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 647, 656, 750, 1007, 1397
BstNSI	RCATGY	1 cut(s)	59
BstSFI	CTRYAG	2 cut(s)	62, 1008
BstSLI	GKGCMC	1 cut(s)	1003
BstUI	CGCG	2 cut(s)	624, 881
BstX2I	RGATCY	2 cut(s)	217, 762
BstYI	RGATCY	2 cut(s)	217, 762
BsuI	GTATCC	1 cut(s)	672
BtgZI	GCGATG	1 cut(s)	1150
BtsCI	GGATG	8 cut(s)	277, 283, 394, 442, 520, 857, 1077, 1327
BtsI	GCAGTG	1 cut(s)	1001
BtsIMutI	CAGTG	5 cut(s)	661, 687, 856, 1001, 1329
Cac8I	GCNNGC	3 cut(s)	622, 1008, 1171
CciI	TCATGA	4 cut(s)	121, 343, 667, 972
CfoI	GCGC	2 cut(s)	746, 881
CseI	GACGC	1 cut(s)	930
CviAII	CATG	8 cut(s)	56, 122, 296, 344, 455, 587, 668, 973
CviJI	RGCY	9 cut(s)	24, 205, 383, 428, 641, 722, 1030, 1173, 1267
CviKI_1	RGCY	9 cut(s)	24, 205, 383, 428, 641, 722, 1030, 1173, 1267
DdeI	CTNAG	4 cut(s)	228, 384, 429, 690
DpnI	GATC	7 cut(s)	219, 290, 483, 764, 981, 1071, 1335
DpnII	GATC	7 cut(s)	217, 288, 481, 762, 979, 1069, 1333
DraIII	CACNNNGTG	1 cut(s)	899
Eco57I	CTGAAG	2 cut(s)	1125, 1230
Eco72I	CACGTG	1 cut(s)	262
EcoRI	GAATTC	1 cut(s)	1198
EcoT22I	ATGCAT	1 cut(s)	92
FaeI	CATG	8 cut(s)	59, 125, 299, 347, 458, 590, 671, 976
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	8 cut(s)	55, 121, 295, 343, 454, 586, 667, 972
Fnu4HI	GCNGC	1 cut(s)	1031
FokI	GGATG	8 cut(s)	284, 290, 401, 449, 527, 844, 1064, 1334
Fsp4HI	GCNGC	1 cut(s)	1031
FspBI	CTAG	2 cut(s)	1128, 1417
GlaI	GCGC	2 cut(s)	745, 880
GluI	GCNGC	1 cut(s)	1031
GsuI	CTGGAG	1 cut(s)	519
HaeII	RGCGCY	1 cut(s)	747
HapII	CCGG	1 cut(s)	1293
HgaI	GACGC	1 cut(s)	930
HhaI	GCGC	2 cut(s)	746, 881
Hin1II	CATG	8 cut(s)	59, 125, 299, 347, 458, 590, 671, 976
Hin6I	GCGC	2 cut(s)	744, 879
HinP1I	GCGC	2 cut(s)	744, 879
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	9 cut(s)	671, 854, 890, 985, 1014, 1064, 1124, 1145, 1226
HpaII	CCGG	1 cut(s)	1293
HphI	GGTGA	6 cut(s)	211, 314, 857, 1201, 1226, 1244
Hpy166II	GTNNAC	2 cut(s)	817, 1001
Hpy188I	TCNGA	9 cut(s)	181, 678, 868, 946, 984, 1021, 1069, 1144, 1210
Hpy8I	GTNNAC	2 cut(s)	817, 1001
Hpy99I	CGWCG	2 cut(s)	169, 1303
HpyAV	CCTTC	6 cut(s)	127, 238, 304, 763, 1205, 1358
HpyCH4III	ACNGT	6 cut(s)	169, 610, 851, 907, 925, 1058
HpyCH4IV	ACGT	2 cut(s)	261, 1298
HpyCH4V	TGCA	5 cut(s)	64, 90, 590, 1001, 1010
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 647, 656, 750, 1007, 1397
HpyF3I	CTNAG	4 cut(s)	228, 384, 429, 690
HpySE526I	ACGT	2 cut(s)	261, 1298
Hsp92II	CATG	8 cut(s)	59, 125, 299, 347, 458, 590, 671, 976
HspAI	GCGC	2 cut(s)	744, 879
Kpn2I	TCCGGA	1 cut(s)	1292
Kzo9I	GATC	7 cut(s)	217, 288, 481, 762, 979, 1069, 1333
LmnI	GCTCC	2 cut(s)	628, 1397
LweI	GCATC	2 cut(s)	637, 1312
MaeI	CTAG	2 cut(s)	1128, 1417
MaeII	ACGT	2 cut(s)	261, 1298
MaeIII	GTNAC	3 cut(s)	845, 883, 1058
MalI	GATC	7 cut(s)	219, 290, 483, 764, 981, 1071, 1335
MboI	GATC	7 cut(s)	217, 288, 481, 762, 979, 1069, 1333
MfeI	CAATTG	1 cut(s)	1392
MflI	RGATCY	2 cut(s)	217, 762
MhlI	GDGCHC	1 cut(s)	1003
MluCI	AATT	7 cut(s)	137, 232, 597, 808, 916, 1198, 1392
MlyI	GAGTC	3 cut(s)	680, 994, 1133
Mph1103I	ATGCAT	1 cut(s)	92
MroI	TCCGGA	1 cut(s)	1292
MseI	TTAA	2 cut(s)	98, 909
MslI	CAYNNNNRTG	3 cut(s)	300, 591, 833
MspI	CCGG	1 cut(s)	1293
MunI	CAATTG	1 cut(s)	1392
MvnI	CGCG	2 cut(s)	624, 881
MwoI	GCNNNNNNNGC	6 cut(s)	61, 647, 656, 750, 1007, 1397
NdeII	GATC	7 cut(s)	217, 288, 481, 762, 979, 1069, 1333
NlaIII	CATG	8 cut(s)	59, 125, 299, 347, 458, 590, 671, 976
NlaIV	GGNNCC	1 cut(s)	774
NmuCI	GTSAC	1 cut(s)	845
NsiI	ATGCAT	1 cut(s)	92
NspI	RCATGY	1 cut(s)	59
OliI	CACNNNNGTG	1 cut(s)	833
PagI	TCATGA	4 cut(s)	121, 343, 667, 972
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	6 cut(s)	854, 890, 1014, 1064, 1145, 1226
PkrI	GCNGC	1 cut(s)	1032
PleI	GAGTC	3 cut(s)	679, 993, 1132
PmaCI	CACGTG	1 cut(s)	262
PmlI	CACGTG	1 cut(s)	262
PpsI	GAGTC	3 cut(s)	679, 993, 1132
Ppu21I	YACGTR	1 cut(s)	262
PsiI	TTATAA	1 cut(s)	237
PspCI	CACGTG	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	774
PstI	CTGCAG	2 cut(s)	66, 1012
PsuI	RGATCY	2 cut(s)	217, 762
RseI	CAYNNNNRTG	3 cut(s)	300, 591, 833
SaqAI	TTAA	2 cut(s)	98, 909
SatI	GCNGC	1 cut(s)	1031
Sau3AI	GATC	7 cut(s)	217, 288, 481, 762, 979, 1069, 1333
SbfI	CCTGCAGG	1 cut(s)	1012
SchI	GAGTC	3 cut(s)	680, 994, 1133
SdaI	CCTGCAGG	1 cut(s)	1012
SduI	GDGCHC	1 cut(s)	1003
SfaNI	GCATC	2 cut(s)	637, 1312
SfcI	CTRYAG	2 cut(s)	62, 1008
SmiMI	CAYNNNNRTG	3 cut(s)	300, 591, 833
SmlI	CTYRAG	2 cut(s)	723, 1046
SmoI	CTYRAG	2 cut(s)	723, 1046
Sse8387I	CCTGCAGG	1 cut(s)	1012
Sse9I	AATT	7 cut(s)	137, 232, 597, 808, 916, 1198, 1392
SsiI	CCGC	2 cut(s)	881, 1031
SspMI	CTAG	2 cut(s)	1128, 1417
TaaI	ACNGT	6 cut(s)	169, 610, 851, 907, 925, 1058
TaiI	ACGT	2 cut(s)	264, 1301
TaqI	TCGA	4 cut(s)	156, 164, 920, 1301
TaqII	GACCGA	1 cut(s)	1199
TasI	AATT	7 cut(s)	137, 232, 597, 808, 916, 1198, 1392
TauI	GCSGC	1 cut(s)	1033
TfiI	GAWTC	6 cut(s)	854, 890, 1014, 1064, 1145, 1226
Tru1I	TTAA	2 cut(s)	98, 909
Tru9I	TTAA	2 cut(s)	98, 909
TscAI	CASTG	5 cut(s)	661, 694, 856, 1008, 1336
TseFI	GTSAC	1 cut(s)	845
Tsp45I	GTSAC	1 cut(s)	845
TspRI	CASTG	5 cut(s)	661, 694, 856, 1008, 1336
VneI	GTGCAC	1 cut(s)	999
XapI	RAATTY	2 cut(s)	137, 1198
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	2 cut(s)	1128, 1417
Zsp2I	ATGCAT	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.