MD10G1112600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
18615536 .. 18618538
3003 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1112600.v1.1.491

Sequence Viewer

Length: 1680 bp
ATGATCAAGCGGGCGCCAAGTAGGAACCAGAGAACCAAAGGAATCAAGGTGAAGCATGTTCTGCAGATCTGTCTGCTGCTTGGGGTGTGCTTTTGGTTAATCTATCAGGTCAAGCATTCCCATGATAAGAAAGTGGCATTAGATAAGAAAGATAAAAAAACCCCAACCAGAAGCCTGAGTGAAGGTGAGCTTCTGAAACTTGGGAGGAAGGACCTTCCGAAACTTGAAGTCCCTAAAAATGAGAAACAAGAGGAAGAGGATGAAGTTGAAGCAGCAGGAGAGGAAGACGAGAAACATCAAGTAGATGTGCATGAAGAAGAGGATTCAAAACATGAAGTAGAAGCACATGAAGAAGAGGATCAGAAACATGAAGGGGAAGAGCGAGAAGAAGAGGATCAGAAGCATGAAGTAGGAGAGCAAGAAGAAGAGGATCCAAAGGGTAAGCAAGAAGAAGAGGATCTGAAGCATGAGGCGGAAGAGCAAGAGGAGGAAGAAAACAAGAATGAAGAGACAGAGGATGAGGGAAGAGGAGCTGGAGATGATGAGATAGATGAAAATGAGCAAGAGGGAAATGAAGGGGAAGTGGAGCACGATGAGGATTTTGTAGATGAAGAGAAAGAAAGAGAAGATGATGGGAATGAGAAGGATGGTGAAAAGAATGACGGTGAAGAGAGAGAGGATCAAGAAGAACATGACAGTTCATCAGATGATCAAGATAATGAAACCCATGATAAGAATGCTCATGAAGCACGAGAGGAGAATTACAAAGGGGATGATGCTTCTAGTGCAGTGGCCCATGAAGTTACAAGCACTGAAACTGAGAAAGTAAGTTCGGAAAACTTAAATGAGAACCCAGAAACTACTGTGCTAGAAAAAGACAATTCAACAATGGTGGAAGATAGAATGGCTGAAAATGGTACTATTTTAAATGTAGGTGCAAGTGAAGAGAAGGCTAATGGTAATATGGCCAATCCTGCGGAGAGCTCACTTTTACATGAAAAAGTGAAAACACAATCTAATGATGAACCAGAAGCATGGAATAACTCAACAATGGTGAGTGCCGAAGCTAACGATAATTCAACAATAGTGAGTACAGAAGCAAGCAATAACCCTACAGAAACCAACCAGGCAAGTGGTTCATACCAGCAGAACGGTACAGAGATCGTATCTGAGTCAGCTCACTCTGAAAATGCGACGGTGGATGGTATGGGTACTGGAGAAAGCGTGACCATACTAACCATGGTTATGGAACAGGCTAACAACACAGCTTCTCAGAACAATGAATCTGACTCAAATTCAACAATATCCACTAAAATTGAGAATGCAGATGGGGCATTGGGAGAATCATCTTCCTTCTCTAATACGGTAGCGACTAACGTGTCAGAGAATATCTTAAGATCTGATGGAACAGCTGAAACAGAGGGTGGTTCTAGATCTTCATCGTTAAAGGAGGCCACAGATGCTGTTCAGAATGAAGAGTCCAATGGTACAAGTGAATCGGACAGGACAGATGAAGGTTCAGACTCCACAAATGGGACACAGGACGCAACTCAGCGTGATCCAATTGATTCTTCTGATTCCCATATCACCCAAGACAAGAAGGAGGATCGCACGGATCTAACTACACTGCCGGAGATAACAACCGAGGGGGATGAGAATGGAGAGGCTGCAGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

560

Amino Acids

61.77

Weight (kDa)

4.24

Isoelectric Point (pI)

49.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1378
AccB1I GGYRCC 1 cut(s) 13
AciI CCGC 3 cut(s) 10, 473, 977
AclWI GGATC 9 cut(s) 366, 402, 425, 438, 465, 687, 1553, 1614, 1623
AcoI YGGCCR 1 cut(s) 966
AcsI RAATTY 1 cut(s) 1294
AcuI CTGAAG 1 cut(s) 482
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 5 cut(s) 919, 1093, 1156, 1213, 1489
AfiI CCNNNNNNNGG 1 cut(s) 1533
AflII CTTAAG 1 cut(s) 1393
AflIII ACRYGT 1 cut(s) 1377
AgsI TTSAA 6 cut(s) 227, 269, 327, 885, 1080, 1299
AjnI CCWGG 1 cut(s) 1125
AjuI GAANNNNNNNTTGG 2 cut(s) 1555, 1587
AluBI AGCT 7 cut(s) 190, 533, 984, 1067, 1178, 1268, 1412
AluI AGCT 7 cut(s) 190, 533, 984, 1067, 1178, 1268, 1412
Alw21I GWGCWC 2 cut(s) 591, 986
Alw26I GTCTC 1 cut(s) 503
AlwI GGATC 9 cut(s) 366, 402, 425, 438, 465, 687, 1553, 1614, 1623
AlwNI CAGNNNCTG 1 cut(s) 1463
AoxI GGCC 3 cut(s) 792, 966, 1452
ApeKI GCWGC 4 cut(s) 76, 272, 1667, 1670
ApoI RAATTY 1 cut(s) 1294
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 211, 793
AsuHPI GGTGA 6 cut(s) 61, 197, 662, 677, 1066, 1579
AvaII GGWCC 1 cut(s) 211
BalI TGGCCA 1 cut(s) 968
BamHI GGATCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 986
BauI CACGAG 1 cut(s) 750
BbsI GAAGAC 1 cut(s) 291
Bbv12I GWGCWC 2 cut(s) 591, 986
BbvI GCAGC 3 cut(s) 63, 284, 1654
BccI CCATC 5 cut(s) 626, 641, 1196, 1322, 1397
BciT130I CCWGG 1 cut(s) 1127
BclI TGATCA 2 cut(s) 3, 709
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 3 cut(s) 783, 869, 1431
BfmI CTRYAG 3 cut(s) 62, 1113, 1668
BfoI RGCGCY 1 cut(s) 17
BfrI CTTAAG 1 cut(s) 1393
BglII AGATCT 3 cut(s) 66, 1397, 1433
BisI GCNGC 4 cut(s) 77, 273, 1668, 1671
BlsI GCNGC 4 cut(s) 78, 274, 1669, 1672
Bme1390I CCNGG 1 cut(s) 1127
Bme18I GGWCC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 211, 793
BmiI GGNNCC 3 cut(s) 15, 26, 432
BmrFI CCNGG 1 cut(s) 1127
BmsI GCATC 2 cut(s) 766, 1450
BpiI GAAGAC 1 cut(s) 291
BpmI CTGGAG 2 cut(s) 555, 1236
BsaBI GATNNNNATC 1 cut(s) 1438
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 1239, 1644
BsaXI ACNNNNNCTCC 2 cut(s) 1209, 1239
Bsc4I CCNNNNNNNGG 1 cut(s) 1533
Bse1I ACTGG 1 cut(s) 1219
Bse8I GATNNNNATC 1 cut(s) 1438
BseBI CCWGG 1 cut(s) 1127
BseDI CCNNGG 2 cut(s) 1239, 1644
BseGI GGATG 6 cut(s) 265, 523, 652, 778, 1207, 1657
BseJI GATNNNNATC 1 cut(s) 1438
BseLI CCNNNNNNNGG 1 cut(s) 1533
BseMII CTCAG 5 cut(s) 167, 810, 1161, 1286, 1565
BseNI ACTGG 1 cut(s) 1219
BseRI GAGGAG 3 cut(s) 500, 543, 770
BseXI GCAGC 3 cut(s) 63, 284, 1654
BsgI GTGCAG 1 cut(s) 807
BshFI GGCC 3 cut(s) 794, 968, 1454
BshNI GGYRCC 1 cut(s) 13
BsiHKAI GWGCWC 2 cut(s) 591, 986
BsiSI CCGG 1 cut(s) 1631
BslFI GGGAC 2 cut(s) 215, 1549
BslI CCNNNNNNNGG 1 cut(s) 1533
BsmAI GTCTC 1 cut(s) 503
BsmFI GGGAC 2 cut(s) 215, 1549
BsmI GAATGC 3 cut(s) 115, 742, 1327
BsnI GGCC 3 cut(s) 794, 968, 1454
Bsp1286I GDGCHC 2 cut(s) 591, 986
Bsp19I CCATGG 1 cut(s) 1239
BspACI CCGC 3 cut(s) 10, 473, 977
BspANI GGCC 3 cut(s) 794, 968, 1454
BspCNI CTCAG 5 cut(s) 168, 811, 1162, 1285, 1564
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 3 cut(s) 15, 26, 432
BspMAI CTGCAG 2 cut(s) 66, 1672
BspPI GGATC 9 cut(s) 366, 402, 425, 438, 465, 687, 1553, 1614, 1623
BspQI GCTCTTC 2 cut(s) 372, 471
BspT107I GGYRCC 1 cut(s) 13
BspTI CTTAAG 1 cut(s) 1393
BsrI ACTGG 1 cut(s) 1219
BssECI CCNNGG 2 cut(s) 1239, 1644
BssNI GRCGYC 1 cut(s) 14
BssSI CACGAG 1 cut(s) 750
BssT1I CCWWGG 1 cut(s) 1239
Bst2BI CACGAG 1 cut(s) 750
Bst2UI CCWGG 1 cut(s) 1127
Bst4CI ACNGT 6 cut(s) 665, 698, 865, 1154, 1198, 1366
BstACI GRCGYC 1 cut(s) 14
BstAFI CTTAAG 1 cut(s) 1393
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 12, 1102
BstDEI CTNAG 5 cut(s) 176, 819, 1170, 1272, 1551
BstDSI CCRYGG 1 cut(s) 1239
BstF5I GGATG 6 cut(s) 265, 523, 652, 778, 1207, 1657
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstMAI GTCTC 1 cut(s) 503
BstMWI GCNNNNNNNGC 6 cut(s) 61, 746, 785, 974, 1331, 1460
BstNI CCWGG 1 cut(s) 1127
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 1125
BstSFI CTRYAG 3 cut(s) 62, 1113, 1668
BstV1I GCAGC 3 cut(s) 63, 284, 1654
BstV2I GAAGAC 1 cut(s) 291
BstX2I RGATCY 6 cut(s) 66, 430, 457, 1397, 1433, 1615
BstXI CCANNNNNNTGG 3 cut(s) 1035, 1133, 1246
BstYI RGATCY 6 cut(s) 66, 430, 457, 1397, 1433, 1615
BsuRI GGCC 3 cut(s) 794, 968, 1454
BtgI CCRYGG 1 cut(s) 1239
BtsCI GGATG 6 cut(s) 265, 523, 652, 778, 1207, 1657
BtsI GCAGTG 2 cut(s) 795, 1625
BtsIMutI CAGTG 3 cut(s) 795, 810, 1625
Cac8I GCNNGC 2 cut(s) 12, 1102
CaiI CAGNNNCTG 1 cut(s) 1463
CciI TCATGA 1 cut(s) 742
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 2 cut(s) 211, 793
CseI GACGC 1 cut(s) 1553
Csp6I GTAC 5 cut(s) 918, 1092, 1155, 1212, 1488
CspCI CAANNNNNGTGG 4 cut(s) 873, 908, 1297, 1332
CviQI GTAC 5 cut(s) 918, 1092, 1155, 1212, 1488
DdeI CTNAG 5 cut(s) 176, 819, 1170, 1272, 1551
DinI GGCGCC 1 cut(s) 15
DraI TTTAAA 1 cut(s) 927
DrdI GACNNNNNNGTC 1 cut(s) 1378
DseDI GACNNNNNNGTC 1 cut(s) 1378
EaeI YGGCCR 1 cut(s) 966
EciI GGCGGA 1 cut(s) 488
Ecl136II GAGCTC 1 cut(s) 984
Eco130I CCWWGG 1 cut(s) 1239
Eco24I GRGCYC 1 cut(s) 986
Eco47I GGWCC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 984
Eco57I CTGAAG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 984
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 1 cut(s) 1125
EcoT14I CCWWGG 1 cut(s) 1239
EcoT38I GRGCYC 1 cut(s) 986
EgeI GGCGCC 1 cut(s) 15
EheI GGCGCC 1 cut(s) 15
ErhI CCWWGG 1 cut(s) 1239
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 2 cut(s) 215, 1549
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 2 cut(s) 3, 709
Fnu4HI GCNGC 4 cut(s) 77, 273, 1668, 1671
FokI GGATG 6 cut(s) 272, 530, 659, 785, 1214, 1664
FriOI GRGCYC 1 cut(s) 986
Fsp4HI GCNGC 4 cut(s) 77, 273, 1668, 1671
FspBI CTAG 3 cut(s) 783, 869, 1431
GlaI GCGC 1 cut(s) 15
GluI GCNGC 4 cut(s) 77, 273, 1668, 1671
GsuI CTGGAG 2 cut(s) 555, 1236
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 3 cut(s) 794, 968, 1454
HapII CCGG 1 cut(s) 1631
HgaI GACGC 1 cut(s) 1553
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HpaII CCGG 1 cut(s) 1631
HphI GGTGA 6 cut(s) 61, 197, 662, 677, 1066, 1579
Hpy188III TCNNGA 4 cut(s) 683, 713, 743, 1431
Hpy99I CGWCG 1 cut(s) 1198
HpyCH4III ACNGT 6 cut(s) 665, 698, 865, 1154, 1198, 1366
HpyCH4IV ACGT 1 cut(s) 1377
HpyCH4V TGCA 6 cut(s) 64, 310, 788, 938, 1325, 1670
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 746, 785, 974, 1331, 1460
HpyF3I CTNAG 5 cut(s) 176, 819, 1170, 1272, 1551
HpySE526I ACGT 1 cut(s) 1377
Hsp92I GRCGYC 1 cut(s) 14
HspAI GCGC 1 cut(s) 14
KasI GGCGCC 1 cut(s) 13
Ksp22I TGATCA 2 cut(s) 3, 709
LguI GCTCTTC 2 cut(s) 372, 471
LmnI GCTCC 2 cut(s) 530, 586
Lsp1109I GCAGC 3 cut(s) 63, 284, 1654
LweI GCATC 2 cut(s) 766, 1450
MaeI CTAG 3 cut(s) 783, 869, 1431
MaeII ACGT 1 cut(s) 1377
MaeIII GTNAC 2 cut(s) 802, 1225
MfeI CAATTG 1 cut(s) 1563
MflI RGATCY 6 cut(s) 66, 430, 457, 1397, 1433, 1615
MhlI GDGCHC 2 cut(s) 591, 986
MlsI TGGCCA 1 cut(s) 968
MluCI AATT 6 cut(s) 760, 880, 1075, 1294, 1314, 1563
MluNI TGGCCA 1 cut(s) 968
Mly113I GGCGCC 1 cut(s) 14
MlyI GAGTC 4 cut(s) 1181, 1283, 1487, 1517
Mox20I TGGCCA 1 cut(s) 968
MscI TGGCCA 1 cut(s) 968
MseI TTAA 5 cut(s) 98, 842, 926, 1394, 1445
MslI CAYNNNNRTG 2 cut(s) 120, 1244
Msp20I TGGCCA 1 cut(s) 968
MspA1I CMGCKG 1 cut(s) 1412
MspCI CTTAAG 1 cut(s) 1393
MspI CCGG 1 cut(s) 1631
MspR9I CCNGG 1 cut(s) 1127
MunI CAATTG 1 cut(s) 1563
Mva1269I GAATGC 3 cut(s) 115, 742, 1327
MvaI CCWGG 1 cut(s) 1127
MwoI GCNNNNNNNGC 6 cut(s) 61, 746, 785, 974, 1331, 1460
NarI GGCGCC 1 cut(s) 14
NcoI CCATGG 1 cut(s) 1239
NlaIV GGNNCC 3 cut(s) 15, 26, 432
NmuCI GTSAC 1 cut(s) 1225
NspI RCATGY 1 cut(s) 59
PagI TCATGA 1 cut(s) 742
PciSI GCTCTTC 2 cut(s) 372, 471
PctI GAATGC 3 cut(s) 115, 742, 1327
PfeI GAWTC 7 cut(s) 42, 323, 1283, 1343, 1496, 1568, 1577
PkrI GCNGC 4 cut(s) 78, 274, 1669, 1672
PleI GAGTC 4 cut(s) 1180, 1283, 1486, 1517
PluTI GGCGCC 1 cut(s) 17
PpsI GAGTC 4 cut(s) 1180, 1283, 1486, 1517
PpuMI RGGWCCY 1 cut(s) 211
Psp124BI GAGCTC 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 1125
PspGI CCWGG 1 cut(s) 1125
PspN4I GGNNCC 3 cut(s) 15, 26, 432
PspPI GGNCC 2 cut(s) 211, 793
PspPPI RGGWCCY 1 cut(s) 211
PstI CTGCAG 2 cut(s) 66, 1672
PstNI CAGNNNCTG 1 cut(s) 1463
PsuI RGATCY 6 cut(s) 66, 430, 457, 1397, 1433, 1615
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 5 cut(s) 919, 1093, 1156, 1213, 1489
RsaNI GTAC 5 cut(s) 918, 1092, 1155, 1212, 1488
RseI CAYNNNNRTG 2 cut(s) 120, 1244
SacI GAGCTC 1 cut(s) 986
SapI GCTCTTC 2 cut(s) 372, 471
SaqAI TTAA 5 cut(s) 98, 842, 926, 1394, 1445
SatI GCNGC 4 cut(s) 77, 273, 1668, 1671
Sau96I GGNCC 2 cut(s) 211, 793
SchI GAGTC 4 cut(s) 1181, 1283, 1487, 1517
ScrFI CCNGG 1 cut(s) 1127
SduI GDGCHC 2 cut(s) 591, 986
SfaNI GCATC 2 cut(s) 766, 1450
SfcI CTRYAG 3 cut(s) 62, 1113, 1668
SfoI GGCGCC 1 cut(s) 15
SinI GGWCC 1 cut(s) 211
SmiMI CAYNNNNRTG 2 cut(s) 120, 1244
SmlI CTYRAG 1 cut(s) 1393
SmoI CTYRAG 1 cut(s) 1393
Sse9I AATT 6 cut(s) 760, 880, 1075, 1294, 1314, 1563
SsiI CCGC 3 cut(s) 10, 473, 977
SspDI GGCGCC 1 cut(s) 13
SspMI CTAG 3 cut(s) 783, 869, 1431
SstI GAGCTC 1 cut(s) 986
StyD4I CCNGG 1 cut(s) 1125
StyI CCWWGG 1 cut(s) 1239
TaaI ACNGT 6 cut(s) 665, 698, 865, 1154, 1198, 1366
TaiI ACGT 1 cut(s) 1380
TasI AATT 6 cut(s) 760, 880, 1075, 1294, 1314, 1563
TatI WGTACW 1 cut(s) 1091
TfiI GAWTC 7 cut(s) 42, 323, 1283, 1343, 1496, 1568, 1577
Tru1I TTAA 5 cut(s) 98, 842, 926, 1394, 1445
Tru9I TTAA 5 cut(s) 98, 842, 926, 1394, 1445
TscAI CASTG 3 cut(s) 795, 817, 1632
TseFI GTSAC 1 cut(s) 1225
TseI GCWGC 4 cut(s) 76, 272, 1667, 1670
Tsp45I GTSAC 1 cut(s) 1225
TspGWI ACGGA 1 cut(s) 1628
TspRI CASTG 3 cut(s) 795, 817, 1632
Vha464I CTTAAG 1 cut(s) 1393
VpaK11BI GGWCC 1 cut(s) 211
XapI RAATTY 1 cut(s) 1294
XbaI TCTAGA 1 cut(s) 1430
XceI RCATGY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 1237
XspI CTAG 3 cut(s) 783, 869, 1431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.