No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33740 AT4G33740 AT4G33740 AT4G33740 AT4G33740 |
| fragaria_vesca | FvH4_2g02971 FvH4_2g02971 |
| malus_domestica | MD05G1108600.v1.1 MD10G1112600.v1.1 |
| prunus_persica | Prupe.8G152300_v2.0.a1 |
| pyrus_communis | pycom05g10460 pycom10g09740 |
| rosa_chinensis | RchiOBHm_Chr1g0336871 RchiOBHm_Chr6g0247781 |
| rosa_laevigata | RLG00000015180 RLG00000029328 |
| rosa_multiflora | Rmu_sc0001983.1_g000010 Rmu_sc0004920.1_g000004 Rmu_sc0009569.1_g000009 Rmu_sc0018000.1_g000001 |
| rosa_roxburghii | Rroxscaffold_180G00433250 Rroxscaffold_4G00315280 Rroxscaffold_7G00213660 |
| rosa_rugosa | Rorug01G0128600 Rorug05G0528500 |
| rosa_samantha | Rh1AG149300 Rh1BG117700 Rh1CG140500 Rh1DG156600 Rh6AG043600 Rh6BG038300 Rh6CG037100 Rh6DG034200 |
| rosa_wichuraiana | Rw1G012080 Rw6G003780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1378 |
| AccB1I | GGYRCC | 1 cut(s) | 13 |
| AciI | CCGC | 3 cut(s) | 10, 473, 977 |
| AclWI | GGATC | 9 cut(s) | 366, 402, 425, 438, 465, 687, 1553, 1614, 1623 |
| AcoI | YGGCCR | 1 cut(s) | 966 |
| AcsI | RAATTY | 1 cut(s) | 1294 |
| AcuI | CTGAAG | 1 cut(s) | 482 |
| AcyI | GRCGYC | 1 cut(s) | 14 |
| AfaI | GTAC | 5 cut(s) | 919, 1093, 1156, 1213, 1489 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1533 |
| AflII | CTTAAG | 1 cut(s) | 1393 |
| AflIII | ACRYGT | 1 cut(s) | 1377 |
| AgsI | TTSAA | 6 cut(s) | 227, 269, 327, 885, 1080, 1299 |
| AjnI | CCWGG | 1 cut(s) | 1125 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1555, 1587 |
| AluBI | AGCT | 7 cut(s) | 190, 533, 984, 1067, 1178, 1268, 1412 |
| AluI | AGCT | 7 cut(s) | 190, 533, 984, 1067, 1178, 1268, 1412 |
| Alw21I | GWGCWC | 2 cut(s) | 591, 986 |
| Alw26I | GTCTC | 1 cut(s) | 503 |
| AlwI | GGATC | 9 cut(s) | 366, 402, 425, 438, 465, 687, 1553, 1614, 1623 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1463 |
| AoxI | GGCC | 3 cut(s) | 792, 966, 1452 |
| ApeKI | GCWGC | 4 cut(s) | 76, 272, 1667, 1670 |
| ApoI | RAATTY | 1 cut(s) | 1294 |
| AspLEI | GCGC | 1 cut(s) | 16 |
| AspS9I | GGNCC | 2 cut(s) | 211, 793 |
| AsuHPI | GGTGA | 6 cut(s) | 61, 197, 662, 677, 1066, 1579 |
| AvaII | GGWCC | 1 cut(s) | 211 |
| BalI | TGGCCA | 1 cut(s) | 968 |
| BamHI | GGATCC | 1 cut(s) | 430 |
| BanI | GGYRCC | 1 cut(s) | 13 |
| BanII | GRGCYC | 1 cut(s) | 986 |
| BauI | CACGAG | 1 cut(s) | 750 |
| BbsI | GAAGAC | 1 cut(s) | 291 |
| Bbv12I | GWGCWC | 2 cut(s) | 591, 986 |
| BbvI | GCAGC | 3 cut(s) | 63, 284, 1654 |
| BccI | CCATC | 5 cut(s) | 626, 641, 1196, 1322, 1397 |
| BciT130I | CCWGG | 1 cut(s) | 1127 |
| BclI | TGATCA | 2 cut(s) | 3, 709 |
| BcoDI | GTCTC | 1 cut(s) | 503 |
| BfaI | CTAG | 3 cut(s) | 783, 869, 1431 |
| BfmI | CTRYAG | 3 cut(s) | 62, 1113, 1668 |
| BfoI | RGCGCY | 1 cut(s) | 17 |
| BfrI | CTTAAG | 1 cut(s) | 1393 |
| BglII | AGATCT | 3 cut(s) | 66, 1397, 1433 |
| BisI | GCNGC | 4 cut(s) | 77, 273, 1668, 1671 |
| BlsI | GCNGC | 4 cut(s) | 78, 274, 1669, 1672 |
| Bme1390I | CCNGG | 1 cut(s) | 1127 |
| Bme18I | GGWCC | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 2 cut(s) | 211, 793 |
| BmiI | GGNNCC | 3 cut(s) | 15, 26, 432 |
| BmrFI | CCNGG | 1 cut(s) | 1127 |
| BmsI | GCATC | 2 cut(s) | 766, 1450 |
| BpiI | GAAGAC | 1 cut(s) | 291 |
| BpmI | CTGGAG | 2 cut(s) | 555, 1236 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1438 |
| BsaHI | GRCGYC | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 2 cut(s) | 1239, 1644 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1209, 1239 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1533 |
| Bse1I | ACTGG | 1 cut(s) | 1219 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1438 |
| BseBI | CCWGG | 1 cut(s) | 1127 |
| BseDI | CCNNGG | 2 cut(s) | 1239, 1644 |
| BseGI | GGATG | 6 cut(s) | 265, 523, 652, 778, 1207, 1657 |
| BseJI | GATNNNNATC | 1 cut(s) | 1438 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1533 |
| BseMII | CTCAG | 5 cut(s) | 167, 810, 1161, 1286, 1565 |
| BseNI | ACTGG | 1 cut(s) | 1219 |
| BseRI | GAGGAG | 3 cut(s) | 500, 543, 770 |
| BseXI | GCAGC | 3 cut(s) | 63, 284, 1654 |
| BsgI | GTGCAG | 1 cut(s) | 807 |
| BshFI | GGCC | 3 cut(s) | 794, 968, 1454 |
| BshNI | GGYRCC | 1 cut(s) | 13 |
| BsiHKAI | GWGCWC | 2 cut(s) | 591, 986 |
| BsiSI | CCGG | 1 cut(s) | 1631 |
| BslFI | GGGAC | 2 cut(s) | 215, 1549 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1533 |
| BsmAI | GTCTC | 1 cut(s) | 503 |
| BsmFI | GGGAC | 2 cut(s) | 215, 1549 |
| BsmI | GAATGC | 3 cut(s) | 115, 742, 1327 |
| BsnI | GGCC | 3 cut(s) | 794, 968, 1454 |
| Bsp1286I | GDGCHC | 2 cut(s) | 591, 986 |
| Bsp19I | CCATGG | 1 cut(s) | 1239 |
| BspACI | CCGC | 3 cut(s) | 10, 473, 977 |
| BspANI | GGCC | 3 cut(s) | 794, 968, 1454 |
| BspCNI | CTCAG | 5 cut(s) | 168, 811, 1162, 1285, 1564 |
| BspHI | TCATGA | 1 cut(s) | 742 |
| BspLI | GGNNCC | 3 cut(s) | 15, 26, 432 |
| BspMAI | CTGCAG | 2 cut(s) | 66, 1672 |
| BspPI | GGATC | 9 cut(s) | 366, 402, 425, 438, 465, 687, 1553, 1614, 1623 |
| BspQI | GCTCTTC | 2 cut(s) | 372, 471 |
| BspT107I | GGYRCC | 1 cut(s) | 13 |
| BspTI | CTTAAG | 1 cut(s) | 1393 |
| BsrI | ACTGG | 1 cut(s) | 1219 |
| BssECI | CCNNGG | 2 cut(s) | 1239, 1644 |
| BssNI | GRCGYC | 1 cut(s) | 14 |
| BssSI | CACGAG | 1 cut(s) | 750 |
| BssT1I | CCWWGG | 1 cut(s) | 1239 |
| Bst2BI | CACGAG | 1 cut(s) | 750 |
| Bst2UI | CCWGG | 1 cut(s) | 1127 |
| Bst4CI | ACNGT | 6 cut(s) | 665, 698, 865, 1154, 1198, 1366 |
| BstACI | GRCGYC | 1 cut(s) | 14 |
| BstAFI | CTTAAG | 1 cut(s) | 1393 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 2 cut(s) | 12, 1102 |
| BstDEI | CTNAG | 5 cut(s) | 176, 819, 1170, 1272, 1551 |
| BstDSI | CCRYGG | 1 cut(s) | 1239 |
| BstF5I | GGATG | 6 cut(s) | 265, 523, 652, 778, 1207, 1657 |
| BstH2I | RGCGCY | 1 cut(s) | 17 |
| BstHHI | GCGC | 1 cut(s) | 16 |
| BstMAI | GTCTC | 1 cut(s) | 503 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 61, 746, 785, 974, 1331, 1460 |
| BstNI | CCWGG | 1 cut(s) | 1127 |
| BstNSI | RCATGY | 1 cut(s) | 59 |
| BstSCI | CCNGG | 1 cut(s) | 1125 |
| BstSFI | CTRYAG | 3 cut(s) | 62, 1113, 1668 |
| BstV1I | GCAGC | 3 cut(s) | 63, 284, 1654 |
| BstV2I | GAAGAC | 1 cut(s) | 291 |
| BstX2I | RGATCY | 6 cut(s) | 66, 430, 457, 1397, 1433, 1615 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1035, 1133, 1246 |
| BstYI | RGATCY | 6 cut(s) | 66, 430, 457, 1397, 1433, 1615 |
| BsuRI | GGCC | 3 cut(s) | 794, 968, 1454 |
| BtgI | CCRYGG | 1 cut(s) | 1239 |
| BtsCI | GGATG | 6 cut(s) | 265, 523, 652, 778, 1207, 1657 |
| BtsI | GCAGTG | 2 cut(s) | 795, 1625 |
| BtsIMutI | CAGTG | 3 cut(s) | 795, 810, 1625 |
| Cac8I | GCNNGC | 2 cut(s) | 12, 1102 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1463 |
| CciI | TCATGA | 1 cut(s) | 742 |
| CfoI | GCGC | 1 cut(s) | 16 |
| Cfr13I | GGNCC | 2 cut(s) | 211, 793 |
| CseI | GACGC | 1 cut(s) | 1553 |
| Csp6I | GTAC | 5 cut(s) | 918, 1092, 1155, 1212, 1488 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 873, 908, 1297, 1332 |
| CviQI | GTAC | 5 cut(s) | 918, 1092, 1155, 1212, 1488 |
| DdeI | CTNAG | 5 cut(s) | 176, 819, 1170, 1272, 1551 |
| DinI | GGCGCC | 1 cut(s) | 15 |
| DraI | TTTAAA | 1 cut(s) | 927 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1378 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1378 |
| EaeI | YGGCCR | 1 cut(s) | 966 |
| EciI | GGCGGA | 1 cut(s) | 488 |
| Ecl136II | GAGCTC | 1 cut(s) | 984 |
| Eco130I | CCWWGG | 1 cut(s) | 1239 |
| Eco24I | GRGCYC | 1 cut(s) | 986 |
| Eco47I | GGWCC | 1 cut(s) | 211 |
| Eco53kI | GAGCTC | 1 cut(s) | 984 |
| Eco57I | CTGAAG | 1 cut(s) | 482 |
| EcoICRI | GAGCTC | 1 cut(s) | 984 |
| EcoO109I | RGGNCCY | 1 cut(s) | 211 |
| EcoRII | CCWGG | 1 cut(s) | 1125 |
| EcoT14I | CCWWGG | 1 cut(s) | 1239 |
| EcoT38I | GRGCYC | 1 cut(s) | 986 |
| EgeI | GGCGCC | 1 cut(s) | 15 |
| EheI | GGCGCC | 1 cut(s) | 15 |
| ErhI | CCWWGG | 1 cut(s) | 1239 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 174, 206 |
| FaqI | GGGAC | 2 cut(s) | 215, 1549 |
| FauI | CCCGC | 1 cut(s) | 3 |
| FbaI | TGATCA | 2 cut(s) | 3, 709 |
| Fnu4HI | GCNGC | 4 cut(s) | 77, 273, 1668, 1671 |
| FokI | GGATG | 6 cut(s) | 272, 530, 659, 785, 1214, 1664 |
| FriOI | GRGCYC | 1 cut(s) | 986 |
| Fsp4HI | GCNGC | 4 cut(s) | 77, 273, 1668, 1671 |
| FspBI | CTAG | 3 cut(s) | 783, 869, 1431 |
| GlaI | GCGC | 1 cut(s) | 15 |
| GluI | GCNGC | 4 cut(s) | 77, 273, 1668, 1671 |
| GsuI | CTGGAG | 2 cut(s) | 555, 1236 |
| HaeII | RGCGCY | 1 cut(s) | 17 |
| HaeIII | GGCC | 3 cut(s) | 794, 968, 1454 |
| HapII | CCGG | 1 cut(s) | 1631 |
| HgaI | GACGC | 1 cut(s) | 1553 |
| HhaI | GCGC | 1 cut(s) | 16 |
| Hin1I | GRCGYC | 1 cut(s) | 14 |
| Hin6I | GCGC | 1 cut(s) | 14 |
| HinP1I | GCGC | 1 cut(s) | 14 |
| HpaII | CCGG | 1 cut(s) | 1631 |
| HphI | GGTGA | 6 cut(s) | 61, 197, 662, 677, 1066, 1579 |
| Hpy188III | TCNNGA | 4 cut(s) | 683, 713, 743, 1431 |
| Hpy99I | CGWCG | 1 cut(s) | 1198 |
| HpyCH4III | ACNGT | 6 cut(s) | 665, 698, 865, 1154, 1198, 1366 |
| HpyCH4IV | ACGT | 1 cut(s) | 1377 |
| HpyCH4V | TGCA | 6 cut(s) | 64, 310, 788, 938, 1325, 1670 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 61, 746, 785, 974, 1331, 1460 |
| HpyF3I | CTNAG | 5 cut(s) | 176, 819, 1170, 1272, 1551 |
| HpySE526I | ACGT | 1 cut(s) | 1377 |
| Hsp92I | GRCGYC | 1 cut(s) | 14 |
| HspAI | GCGC | 1 cut(s) | 14 |
| KasI | GGCGCC | 1 cut(s) | 13 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 709 |
| LguI | GCTCTTC | 2 cut(s) | 372, 471 |
| LmnI | GCTCC | 2 cut(s) | 530, 586 |
| Lsp1109I | GCAGC | 3 cut(s) | 63, 284, 1654 |
| LweI | GCATC | 2 cut(s) | 766, 1450 |
| MaeI | CTAG | 3 cut(s) | 783, 869, 1431 |
| MaeII | ACGT | 1 cut(s) | 1377 |
| MaeIII | GTNAC | 2 cut(s) | 802, 1225 |
| MfeI | CAATTG | 1 cut(s) | 1563 |
| MflI | RGATCY | 6 cut(s) | 66, 430, 457, 1397, 1433, 1615 |
| MhlI | GDGCHC | 2 cut(s) | 591, 986 |
| MlsI | TGGCCA | 1 cut(s) | 968 |
| MluCI | AATT | 6 cut(s) | 760, 880, 1075, 1294, 1314, 1563 |
| MluNI | TGGCCA | 1 cut(s) | 968 |
| Mly113I | GGCGCC | 1 cut(s) | 14 |
| MlyI | GAGTC | 4 cut(s) | 1181, 1283, 1487, 1517 |
| Mox20I | TGGCCA | 1 cut(s) | 968 |
| MscI | TGGCCA | 1 cut(s) | 968 |
| MseI | TTAA | 5 cut(s) | 98, 842, 926, 1394, 1445 |
| MslI | CAYNNNNRTG | 2 cut(s) | 120, 1244 |
| Msp20I | TGGCCA | 1 cut(s) | 968 |
| MspA1I | CMGCKG | 1 cut(s) | 1412 |
| MspCI | CTTAAG | 1 cut(s) | 1393 |
| MspI | CCGG | 1 cut(s) | 1631 |
| MspR9I | CCNGG | 1 cut(s) | 1127 |
| MunI | CAATTG | 1 cut(s) | 1563 |
| Mva1269I | GAATGC | 3 cut(s) | 115, 742, 1327 |
| MvaI | CCWGG | 1 cut(s) | 1127 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 61, 746, 785, 974, 1331, 1460 |
| NarI | GGCGCC | 1 cut(s) | 14 |
| NcoI | CCATGG | 1 cut(s) | 1239 |
| NlaIV | GGNNCC | 3 cut(s) | 15, 26, 432 |
| NmuCI | GTSAC | 1 cut(s) | 1225 |
| NspI | RCATGY | 1 cut(s) | 59 |
| PagI | TCATGA | 1 cut(s) | 742 |
| PciSI | GCTCTTC | 2 cut(s) | 372, 471 |
| PctI | GAATGC | 3 cut(s) | 115, 742, 1327 |
| PfeI | GAWTC | 7 cut(s) | 42, 323, 1283, 1343, 1496, 1568, 1577 |
| PkrI | GCNGC | 4 cut(s) | 78, 274, 1669, 1672 |
| PleI | GAGTC | 4 cut(s) | 1180, 1283, 1486, 1517 |
| PluTI | GGCGCC | 1 cut(s) | 17 |
| PpsI | GAGTC | 4 cut(s) | 1180, 1283, 1486, 1517 |
| PpuMI | RGGWCCY | 1 cut(s) | 211 |
| Psp124BI | GAGCTC | 1 cut(s) | 986 |
| Psp5II | RGGWCCY | 1 cut(s) | 211 |
| Psp6I | CCWGG | 1 cut(s) | 1125 |
| PspGI | CCWGG | 1 cut(s) | 1125 |
| PspN4I | GGNNCC | 3 cut(s) | 15, 26, 432 |
| PspPI | GGNCC | 2 cut(s) | 211, 793 |
| PspPPI | RGGWCCY | 1 cut(s) | 211 |
| PstI | CTGCAG | 2 cut(s) | 66, 1672 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1463 |
| PsuI | RGATCY | 6 cut(s) | 66, 430, 457, 1397, 1433, 1615 |
| PvuII | CAGCTG | 1 cut(s) | 1412 |
| RsaI | GTAC | 5 cut(s) | 919, 1093, 1156, 1213, 1489 |
| RsaNI | GTAC | 5 cut(s) | 918, 1092, 1155, 1212, 1488 |
| RseI | CAYNNNNRTG | 2 cut(s) | 120, 1244 |
| SacI | GAGCTC | 1 cut(s) | 986 |
| SapI | GCTCTTC | 2 cut(s) | 372, 471 |
| SaqAI | TTAA | 5 cut(s) | 98, 842, 926, 1394, 1445 |
| SatI | GCNGC | 4 cut(s) | 77, 273, 1668, 1671 |
| Sau96I | GGNCC | 2 cut(s) | 211, 793 |
| SchI | GAGTC | 4 cut(s) | 1181, 1283, 1487, 1517 |
| ScrFI | CCNGG | 1 cut(s) | 1127 |
| SduI | GDGCHC | 2 cut(s) | 591, 986 |
| SfaNI | GCATC | 2 cut(s) | 766, 1450 |
| SfcI | CTRYAG | 3 cut(s) | 62, 1113, 1668 |
| SfoI | GGCGCC | 1 cut(s) | 15 |
| SinI | GGWCC | 1 cut(s) | 211 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 120, 1244 |
| SmlI | CTYRAG | 1 cut(s) | 1393 |
| SmoI | CTYRAG | 1 cut(s) | 1393 |
| Sse9I | AATT | 6 cut(s) | 760, 880, 1075, 1294, 1314, 1563 |
| SsiI | CCGC | 3 cut(s) | 10, 473, 977 |
| SspDI | GGCGCC | 1 cut(s) | 13 |
| SspMI | CTAG | 3 cut(s) | 783, 869, 1431 |
| SstI | GAGCTC | 1 cut(s) | 986 |
| StyD4I | CCNGG | 1 cut(s) | 1125 |
| StyI | CCWWGG | 1 cut(s) | 1239 |
| TaaI | ACNGT | 6 cut(s) | 665, 698, 865, 1154, 1198, 1366 |
| TaiI | ACGT | 1 cut(s) | 1380 |
| TasI | AATT | 6 cut(s) | 760, 880, 1075, 1294, 1314, 1563 |
| TatI | WGTACW | 1 cut(s) | 1091 |
| TfiI | GAWTC | 7 cut(s) | 42, 323, 1283, 1343, 1496, 1568, 1577 |
| Tru1I | TTAA | 5 cut(s) | 98, 842, 926, 1394, 1445 |
| Tru9I | TTAA | 5 cut(s) | 98, 842, 926, 1394, 1445 |
| TscAI | CASTG | 3 cut(s) | 795, 817, 1632 |
| TseFI | GTSAC | 1 cut(s) | 1225 |
| TseI | GCWGC | 4 cut(s) | 76, 272, 1667, 1670 |
| Tsp45I | GTSAC | 1 cut(s) | 1225 |
| TspGWI | ACGGA | 1 cut(s) | 1628 |
| TspRI | CASTG | 3 cut(s) | 795, 817, 1632 |
| Vha464I | CTTAAG | 1 cut(s) | 1393 |
| VpaK11BI | GGWCC | 1 cut(s) | 211 |
| XapI | RAATTY | 1 cut(s) | 1294 |
| XbaI | TCTAGA | 1 cut(s) | 1430 |
| XceI | RCATGY | 1 cut(s) | 59 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1237 |
| XspI | CTAG | 3 cut(s) | 783, 869, 1431 |