Rorug01G0128600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003510
Physical Location & Seq
Reverse (-)
21926757 .. 21933344
6588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0128600.1

Sequence Viewer

Length: 690 bp
ATGTGTTGGTTCTTTAATTTGGTTGGTGAAATGGTTGCGAAGCTTGATTGTGGTGCTCAGGCTAGTGTTGCCAAGCTGCAAACTTTGGTATCTGTATCGACTGACAAGCTGGAGCTAAGGGTCTACGGTTTCAATGACAAGCTTCCAGCTCTGTTGTCAAAGATTCTGAAAACAACCAAAAGTTTCATGCCAATTTCTGATCGTTTTATGGTTACTAAAGAAGATATGGAGCGAAAGTTAAAGAACACCAATGTGAAGCCTCTGAGTCACTCTACATACTTGAGAGTGCAAGTTTTGTTCCAGAGATTGTATGATGTTGATGAGAAGTTGCACATTTTAAGTGGACTTTCTATTTCTGATGTGAAGTCAGGAATAACAGCTTTGGTCCAAGATACACAGGTGTACATTGAAGGCCTCTGTCATGGAAATTTGTCAGAAAAAGAAGCAATCAGGCTTTCAGATATATTTAAAACAAATTTTGGTGTACAACCACTTCCAATTGAACTGATGCGTAGTGAACAGTGTATTTGTCTTCCTCCTTCTGCTAACCTCATTAGAGATGTCAGTGTGAAGAATAAGTCTGAAACAAATTCGCTTCAAATTGAGCGGGAATTGAGGATCGAGTCCCTCAGATTGAGAGCCCTGATAGATCTTTTCAATGAAATTGTGGAGGAACCACTTTTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.02

Weight (kDa)

6.84

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 19 - 111 4.6e-20 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 607
AccI GTMKAC 1 cut(s) 123
AciI CCGC 1 cut(s) 607
AclWI GGATC 1 cut(s) 626
AcsI RAATTY 3 cut(s) 427, 475, 589
AfaI GTAC 2 cut(s) 404, 486
AgsI TTSAA 6 cut(s) 133, 410, 503, 599, 658, 685
AleI CACNNNNGTG 1 cut(s) 251
AluBI AGCT 7 cut(s) 43, 76, 109, 115, 142, 149, 380
AluI AGCT 7 cut(s) 43, 76, 109, 115, 142, 149, 380
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 1 cut(s) 626
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 3 cut(s) 427, 475, 589
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 38
AvaII GGWCC 1 cut(s) 385
BaeI ACNNNNGTAYC 4 cut(s) 72, 105, 384, 417
BanII GRGCYC 1 cut(s) 643
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BbsI GAAGAC 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 63
BfaI CTAG 1 cut(s) 63
BglII AGATCT 1 cut(s) 649
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 1 cut(s) 675
BmsI GCATC 1 cut(s) 498
BpiI GAAGAC 1 cut(s) 524
BpmI CTGGAG 1 cut(s) 131
Bpu10I CCTNAGC 2 cut(s) 57, 116
BpuEI CTTGAG 1 cut(s) 301
BsaXI ACNNNNNCTCC 2 cut(s) 221, 251
BseMII CTCAG 3 cut(s) 71, 254, 643
BseXI GCAGC 1 cut(s) 63
BshFI GGCC 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 58
BslFI GGGAC 1 cut(s) 610
BsmFI GGGAC 1 cut(s) 610
BsnI GGCC 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 58, 643
Bsp1407I TGTACA 2 cut(s) 402, 484
Bsp143I GATC 3 cut(s) 199, 618, 649
BspACI CCGC 1 cut(s) 607
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 3 cut(s) 70, 255, 642
BspLI GGNNCC 1 cut(s) 675
BspPI GGATC 1 cut(s) 626
BsrBI CCGCTC 1 cut(s) 607
BsrGI TGTACA 2 cut(s) 402, 484
BssMI GATC 3 cut(s) 199, 618, 649
Bst4CI ACNGT 2 cut(s) 128, 522
BstAUI TGTACA 2 cut(s) 402, 484
BstDEI CTNAG 4 cut(s) 57, 116, 263, 629
BstKTI GATC 3 cut(s) 202, 621, 652
BstMBI GATC 3 cut(s) 199, 618, 649
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 524
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BsuRI GGCC 1 cut(s) 414
BtsIMutI CAGTG 2 cut(s) 527, 571
Cfr13I GGNCC 1 cut(s) 385
Csp6I GTAC 2 cut(s) 403, 485
CviAII CATG 2 cut(s) 187, 422
CviQI GTAC 2 cut(s) 403, 485
DdeI CTNAG 4 cut(s) 57, 116, 263, 629
DpnI GATC 3 cut(s) 201, 620, 651
DpnII GATC 3 cut(s) 199, 618, 649
DraI TTTAAA 1 cut(s) 469
Eco147I AGGCCT 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 643
Eco47I GGWCC 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 643
FaeI CATG 2 cut(s) 190, 425
FaiI YATR 7 cut(s) 188, 209, 227, 277, 312, 423, 464
FaqI GGGAC 1 cut(s) 610
FatI CATG 2 cut(s) 186, 421
FauI CCCGC 1 cut(s) 600
FblI GTMKAC 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 77
FriOI GRGCYC 1 cut(s) 643
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 1 cut(s) 63
GluI GCNGC 1 cut(s) 77
GsuI CTGGAG 1 cut(s) 131
HaeIII GGCC 1 cut(s) 414
Hin1II CATG 2 cut(s) 190, 425
HindIII AAGCTT 2 cut(s) 41, 140
HinfI GANTC 3 cut(s) 163, 265, 623
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 5 cut(s) 124, 344, 403, 485, 518
Hpy188I TCNGA 8 cut(s) 168, 199, 264, 358, 436, 460, 583, 632
Hpy188III TCNNGA 2 cut(s) 301, 369
Hpy8I GTNNAC 5 cut(s) 124, 344, 403, 485, 518
HpyAV CCTTC 2 cut(s) 404, 549
HpyCH4III ACNGT 2 cut(s) 128, 522
HpyCH4V TGCA 3 cut(s) 79, 289, 331
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 4 cut(s) 57, 116, 263, 629
Hsp92II CATG 2 cut(s) 190, 425
Kzo9I GATC 3 cut(s) 199, 618, 649
LmnI GCTCC 2 cut(s) 112, 229
LpnPI CCDG 8 cut(s) 44, 95, 159, 314, 354, 383, 436, 656
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 498
MaeI CTAG 1 cut(s) 63
MaeIII GTNAC 2 cut(s) 211, 266
MalI GATC 3 cut(s) 201, 620, 651
MbiI CCGCTC 1 cut(s) 607
MboI GATC 3 cut(s) 199, 618, 649
MboII GAAGA 3 cut(s) 233, 524, 583
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 2 cut(s) 58, 643
MlyI GAGTC 2 cut(s) 274, 632
MnlI CCTC 7 cut(s) 270, 425, 546, 560, 609, 638, 664
MseI TTAA 4 cut(s) 15, 239, 338, 468
MslI CAYNNNNRTG 1 cut(s) 251
MunI CAATTG 1 cut(s) 498
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 3 cut(s) 199, 618, 649
NlaIII CATG 2 cut(s) 190, 425
NlaIV GGNNCC 1 cut(s) 675
NmuCI GTSAC 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 251
PceI AGGCCT 1 cut(s) 414
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 2 cut(s) 273, 631
PpsI GAGTC 2 cut(s) 273, 631
PspN4I GGNNCC 1 cut(s) 675
PspPI GGNCC 1 cut(s) 385
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 2 cut(s) 404, 486
RsaNI GTAC 2 cut(s) 403, 485
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 4 cut(s) 15, 239, 338, 468
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 3 cut(s) 199, 618, 649
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 2 cut(s) 274, 632
SduI GDGCHC 2 cut(s) 58, 643
SetI ASST 9 cut(s) 45, 78, 111, 117, 144, 151, 382, 402, 552
SfaNI GCATC 1 cut(s) 498
SinI GGWCC 1 cut(s) 385
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 1 cut(s) 607
SspMI CTAG 1 cut(s) 63
StuI AGGCCT 1 cut(s) 414
TaaI ACNGT 2 cut(s) 128, 522
TaqI TCGA 2 cut(s) 98, 621
TatI WGTACW 2 cut(s) 402, 484
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 4 cut(s) 15, 239, 338, 468
Tru9I TTAA 4 cut(s) 15, 239, 338, 468
TscAI CASTG 2 cut(s) 527, 571
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 175, 675
TspRI CASTG 2 cut(s) 527, 571
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 3 cut(s) 427, 475, 589
XmiI GTMKAC 1 cut(s) 123
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.