Rh1BG117700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003510
Physical Location & Seq
Reverse (-)
20105816 .. 20107402
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG117700.1

Sequence Viewer

Length: 1587 bp
ATGTTGAAGAAGCCGCCAAGTAGGAATCACAGAACCAAACGAATCAAAGTGAAGCATATTTTGCAGATTGCCCTGCTCCTTGGGGTTTGCTTTTGGTTGCTTTATCAGCTCAAGCATTCCCATGATAAGAAATTGGCGTTGGATGAGAAAGCTGCAAAAGCCTCAATCAGATCCCTGAGTGAAGGTGAGCTTCTGAAACTTGGGAGGAAAGACCTTCCTCACAAGGACGTCAGTAAAAATGTGAAACAAGAGGAAGAGGAGGAAGAAGAAACTGCAGGAGACGAAGAAGAGAAGCATGAGGTAGAAGGGCGAGAAGAAGAAGATCAAAAACATGAAGTAGAAGAGCGAGAAGAAGAGGATCTGAAGCATGATGTAGAAGAGCAAGAGGAGGAGGAAAGCAAGAATGGTGATACAGAAGATGAGGGAGGAGCTGGAGATGATGAGATAGATGAAAATGAGCAAGAGAGAAAAGAAGGAAAAATTGACCATGAAGAAGGCATTTTAGATGAAGAGAAAGAAAGAGAAGATGAGGGTGATGAGAAGGATGGTGACCGGAATGAGAGGGAAGAGAGAGAGGGTCAAGCAGAAAATGATAACTCATCAGACGATCAAGACAACGACGGAGGTGATAAGAATGCTCATGAGGCACGAGAGGAACATTACAAGGGGGATGATGCTTCTAGTGCAGTGACCCATGATGCCCAAGTTATAAGCACTGAAACTGAGAAAGTAAGTTCAGAAAGTGGAAATGAGAACTCTGGAAGCAGCTCTCTGGAAAAGGAGATAAAATCTAATTACGCTGAGGATGTAAATGGAAACCAAAACAATTCAAGATTGTTGGATGGTAGTACGGCTGAAAATGGCACTGTAAGTGTGGCTGCAAGTGAAGAGAAAGTTAATGAAAATTTGTCCAATCCTGTGGACAGCTCAGTTTTAAATGCAACTATGAAAGTACAGTCCGATGATATACCAGAAGCAGACAATAACTCGACAAATGTGAGTACAGAATCGAGCAACAACTCACTGGAAGTCAACCAGGCAAATGGAACAGAAACTGTATCTGTGTCAGCTCACTCTCAAAATGGTACATTGGATGGTATGACTAGAGAGGGAATTGCCGGAGAAACCTTGGTTGTGGAACAGACTAATAACACAATTTCTGATAATTATCACTCAGATTCTAATTCAACAGTTTCTAGTAATAAGGTAGACAGTAATGTGTCCGAAAAGATCTTAAGATCTAATGGCACAGCTCAACTGGAGGATGACTCCAAGTCTTCAACAATAAATGAGTCTACGGATGCCGCAAAGAATGAAGAATTGAAGAATGAAGATGCCAACAAGAATGAGGAAATAATGAATGAAGAGGCCACCAAGAACAAAGAGTTGAATGGCACAAGTGAATCCGGCAAGACTGGCAACAGTTCAGACTCTAGAAATGGGACGGAGGATGCAGTTCAGCATGACCCCATCGATTCTTCTGATTCCCTCATCTCCGAAGACAAGAAAGAGGCTCGCACAGAGTTAGATACATCACCAGAGATGAAAACAGAGGGCAATGAAAATGGACAGGCTGCAGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

528

Amino Acids

58.13

Weight (kDa)

4.38

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AatII GACGTC 1 cut(s) 231
AccI GTMKAC 2 cut(s) 1209, 1295
AciI CCGC 2 cut(s) 14, 1305
AclWI GGATC 2 cut(s) 165, 366
AcsI RAATTY 1 cut(s) 904
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 4 cut(s) 850, 954, 1003, 1087
AflII CTTAAG 1 cut(s) 1234
AgsI TTSAA 6 cut(s) 7, 831, 1188, 1281, 1324, 1390
AhdI GACNNNNNGTC 1 cut(s) 1273
AjnI CCWGG 1 cut(s) 1035
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 8 cut(s) 109, 152, 190, 431, 768, 927, 1070, 1253
AluI AGCT 8 cut(s) 109, 152, 190, 431, 768, 927, 1070, 1253
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 2 cut(s) 165, 366
AlwNI CAGNNNCTG 1 cut(s) 1055
AoxI GGCC 1 cut(s) 1368
ApeKI GCWGC 5 cut(s) 152, 765, 878, 1574, 1577
ApoI RAATTY 1 cut(s) 904
AsuHPI GGTGA 6 cut(s) 197, 419, 545, 560, 638, 1527
BauI CACGAG 1 cut(s) 648
BbsI GAAGAC 2 cut(s) 1269, 1506
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 4 cut(s) 139, 777, 865, 1561
BccI CCATC 4 cut(s) 539, 836, 1088, 1478
BceAI ACGGC 1 cut(s) 867
BciT130I CCWGG 1 cut(s) 1037
BcoDI GTCTC 1 cut(s) 273
BfaI CTAG 4 cut(s) 681, 1104, 1197, 1434
BfmI CTRYAG 2 cut(s) 273, 1575
BfrI CTTAAG 1 cut(s) 1234
BglII AGATCT 2 cut(s) 1230, 1238
BisI GCNGC 7 cut(s) 14, 153, 766, 879, 1305, 1575, 1578
BlsI GCNGC 7 cut(s) 15, 154, 767, 880, 1306, 1576, 1579
Bme1390I CCNGG 1 cut(s) 1037
BmeRI GACNNNNNGTC 1 cut(s) 1273
BmrFI CCNGG 1 cut(s) 1037
BmsI GCATC 5 cut(s) 664, 688, 1291, 1324, 1441
BpiI GAAGAC 2 cut(s) 1269, 1506
BplI GAGNNNNNCTC 2 cut(s) 1253, 1285
BpmI CTGGAG 2 cut(s) 453, 1280
Bpu10I CCTNAGC 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 1473
BsaBI GATNNNNATC 1 cut(s) 1167
BsaHI GRCGYC 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 79, 1128
BsaWI WCCGGW 1 cut(s) 552
Bse1I ACTGG 3 cut(s) 1029, 1263, 1420
Bse3DI GCAATG 1 cut(s) 1564
Bse8I GATNNNNATC 1 cut(s) 1167
BseBI CCWGG 1 cut(s) 1037
BseCI ATCGAT 1 cut(s) 1473
BseDI CCNNGG 2 cut(s) 79, 1128
BseGI GGATG 9 cut(s) 148, 550, 676, 811, 847, 1099, 1270, 1306, 1456
BseJI GATNNNNATC 1 cut(s) 1167
BseMI GCAATG 1 cut(s) 1564
BseMII CTCAG 5 cut(s) 167, 714, 792, 942, 1188
BseNI ACTGG 3 cut(s) 1029, 1263, 1420
BseRI GAGGAG 4 cut(s) 272, 401, 404, 441
BseXI GCAGC 4 cut(s) 139, 777, 865, 1561
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 1 cut(s) 1370
BshVI ATCGAT 1 cut(s) 1473
BsiSI CCGG 3 cut(s) 553, 1119, 1407
BslFI GGGAC 1 cut(s) 1456
BsmAI GTCTC 1 cut(s) 273
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 1456
BsmI GAATGC 2 cut(s) 115, 640
BsnI GGCC 1 cut(s) 1370
Bsp143I GATC 6 cut(s) 170, 322, 358, 607, 1230, 1238
BspACI CCGC 2 cut(s) 14, 1305
BspANI GGCC 1 cut(s) 1370
BspCNI CTCAG 5 cut(s) 168, 715, 793, 941, 1187
BspDI ATCGAT 1 cut(s) 1473
BspHI TCATGA 1 cut(s) 640
BspMAI CTGCAG 2 cut(s) 277, 1579
BspPI GGATC 2 cut(s) 165, 366
BspQI GCTCTTC 2 cut(s) 336, 372
BspTI CTTAAG 1 cut(s) 1234
BsrDI GCAATG 1 cut(s) 1564
BsrI ACTGG 3 cut(s) 1029, 1263, 1420
BssECI CCNNGG 2 cut(s) 79, 1128
BssMI GATC 6 cut(s) 170, 322, 358, 607, 1230, 1238
BssNI GRCGYC 1 cut(s) 228
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 2 cut(s) 79, 1128
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 1 cut(s) 1037
Bst4CI ACNGT 6 cut(s) 868, 957, 1057, 1192, 1214, 1424
Bst6I CTCTTC 9 cut(s) 249, 282, 336, 348, 372, 504, 561, 882, 1359
BstACI GRCGYC 1 cut(s) 228
BstAFI CTTAAG 1 cut(s) 1234
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 1516
BstDEI CTNAG 5 cut(s) 176, 723, 801, 928, 1174
BstEII GGTNACC 1 cut(s) 548
BstF5I GGATG 9 cut(s) 148, 550, 676, 811, 847, 1099, 1270, 1306, 1456
BstKTI GATC 6 cut(s) 173, 325, 361, 610, 1233, 1241
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 6 cut(s) 170, 322, 358, 607, 1230, 1238
BstMWI GCNNNNNNNGC 6 cut(s) 61, 106, 158, 644, 683, 1416
BstNI CCWGG 1 cut(s) 1037
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 1 cut(s) 1035
BstSFI CTRYAG 2 cut(s) 273, 1575
BstV1I GCAGC 4 cut(s) 139, 777, 865, 1561
BstV2I GAAGAC 2 cut(s) 1269, 1506
BstX2I RGATCY 4 cut(s) 170, 358, 1230, 1238
BstXI CCANNNNNNTGG 2 cut(s) 919, 1043
BstYI RGATCY 4 cut(s) 170, 358, 1230, 1238
Bsu15I ATCGAT 1 cut(s) 1473
BsuRI GGCC 1 cut(s) 1370
BsuTUI ATCGAT 1 cut(s) 1473
BtsCI GGATG 9 cut(s) 148, 550, 676, 811, 847, 1099, 1270, 1306, 1456
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 4 cut(s) 693, 714, 864, 1022
Cac8I GCNNGC 1 cut(s) 1516
CaiI CAGNNNCTG 1 cut(s) 1055
CciI TCATGA 1 cut(s) 640
ClaI ATCGAT 1 cut(s) 1473
Csp6I GTAC 4 cut(s) 849, 953, 1002, 1086
CviAII CATG 8 cut(s) 122, 296, 332, 368, 488, 641, 695, 1463
CviQI GTAC 4 cut(s) 849, 953, 1002, 1086
DdeI CTNAG 5 cut(s) 176, 723, 801, 928, 1174
DpnI GATC 6 cut(s) 172, 324, 360, 609, 1232, 1240
DpnII GATC 6 cut(s) 170, 322, 358, 607, 1230, 1238
DraI TTTAAA 1 cut(s) 936
DriI GACNNNNNGTC 1 cut(s) 1273
Eam1104I CTCTTC 9 cut(s) 249, 282, 336, 348, 372, 504, 561, 882, 1359
Eam1105I GACNNNNNGTC 1 cut(s) 1273
EarI CTCTTC 9 cut(s) 249, 282, 336, 348, 372, 504, 561, 882, 1359
Eco130I CCWWGG 2 cut(s) 79, 1128
Eco57I CTGAAG 1 cut(s) 383
Eco91I GGTNACC 1 cut(s) 548
EcoO65I GGTNACC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 1035
EcoT14I CCWWGG 2 cut(s) 79, 1128
ErhI CCWWGG 2 cut(s) 79, 1128
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 8 cut(s) 125, 299, 335, 371, 491, 644, 698, 1466
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 1456
FatI CATG 8 cut(s) 121, 295, 331, 367, 487, 640, 694, 1462
FblI GTMKAC 2 cut(s) 1209, 1295
Fnu4HI GCNGC 7 cut(s) 14, 153, 766, 879, 1305, 1575, 1578
FokI GGATG 9 cut(s) 155, 557, 683, 818, 854, 1106, 1277, 1313, 1463
Fsp4HI GCNGC 7 cut(s) 14, 153, 766, 879, 1305, 1575, 1578
FspBI CTAG 4 cut(s) 681, 1104, 1197, 1434
GluI GCNGC 7 cut(s) 14, 153, 766, 879, 1305, 1575, 1578
GsuI CTGGAG 2 cut(s) 453, 1280
HaeIII GGCC 1 cut(s) 1370
HapII CCGG 3 cut(s) 553, 1119, 1407
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 8 cut(s) 125, 299, 335, 371, 491, 644, 698, 1466
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HpaII CCGG 3 cut(s) 553, 1119, 1407
HphI GGTGA 6 cut(s) 197, 419, 545, 560, 638, 1527
Hpy166II GTNNAC 4 cut(s) 922, 1033, 1210, 1296
Hpy188III TCNNGA 6 cut(s) 611, 641, 759, 773, 831, 1434
Hpy8I GTNNAC 4 cut(s) 922, 1033, 1210, 1296
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 6 cut(s) 176, 224, 299, 467, 488, 535
HpyCH4III ACNGT 6 cut(s) 868, 957, 1057, 1192, 1214, 1424
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 8 cut(s) 64, 155, 275, 686, 881, 941, 1454, 1577
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 106, 158, 644, 683, 1416
HpyF3I CTNAG 5 cut(s) 176, 723, 801, 928, 1174
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 8 cut(s) 125, 299, 335, 371, 491, 644, 698, 1466
Kzo9I GATC 6 cut(s) 170, 322, 358, 607, 1230, 1238
LguI GCTCTTC 2 cut(s) 336, 372
LmnI GCTCC 2 cut(s) 81, 428
Lsp1109I GCAGC 4 cut(s) 139, 777, 865, 1561
LweI GCATC 5 cut(s) 664, 688, 1291, 1324, 1441
MaeI CTAG 4 cut(s) 681, 1104, 1197, 1434
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 2 cut(s) 548, 688
MalI GATC 6 cut(s) 172, 324, 360, 609, 1232, 1240
MboI GATC 6 cut(s) 170, 322, 358, 607, 1230, 1238
MflI RGATCY 4 cut(s) 170, 358, 1230, 1238
MlyI GAGTC 3 cut(s) 1262, 1301, 1424
MmeI TCCRAC 2 cut(s) 120, 819
MseI TTAA 3 cut(s) 897, 935, 1235
MslI CAYNNNNRTG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 1234
MspI CCGG 3 cut(s) 553, 1119, 1407
MspR9I CCNGG 1 cut(s) 1037
Mva1269I GAATGC 2 cut(s) 115, 640
MvaI CCWGG 1 cut(s) 1037
MwoI GCNNNNNNNGC 6 cut(s) 61, 106, 158, 644, 683, 1416
NdeII GATC 6 cut(s) 170, 322, 358, 607, 1230, 1238
NlaIII CATG 8 cut(s) 125, 299, 335, 371, 491, 644, 698, 1466
NmuCI GTSAC 2 cut(s) 548, 688
PagI TCATGA 1 cut(s) 640
PciSI GCTCTTC 2 cut(s) 336, 372
PctI GAATGC 2 cut(s) 115, 640
PfeI GAWTC 7 cut(s) 25, 42, 1007, 1178, 1403, 1475, 1484
PkrI GCNGC 7 cut(s) 15, 154, 767, 880, 1306, 1576, 1579
PleI GAGTC 3 cut(s) 1262, 1300, 1424
PpsI GAGTC 3 cut(s) 1262, 1300, 1424
PsiI TTATAA 1 cut(s) 710
Psp6I CCWGG 1 cut(s) 1035
PspEI GGTNACC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 1035
PstI CTGCAG 2 cut(s) 277, 1579
PstNI CAGNNNCTG 1 cut(s) 1055
PsuI RGATCY 4 cut(s) 170, 358, 1230, 1238
RsaI GTAC 4 cut(s) 850, 954, 1003, 1087
RsaNI GTAC 4 cut(s) 849, 953, 1002, 1086
RseI CAYNNNNRTG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 336, 372
SaqAI TTAA 3 cut(s) 897, 935, 1235
SatI GCNGC 7 cut(s) 14, 153, 766, 879, 1305, 1575, 1578
Sau3AI GATC 6 cut(s) 170, 322, 358, 607, 1230, 1238
SchI GAGTC 3 cut(s) 1262, 1301, 1424
ScrFI CCNGG 1 cut(s) 1037
SfaNI GCATC 5 cut(s) 664, 688, 1291, 1324, 1441
SfcI CTRYAG 2 cut(s) 273, 1575
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 110, 1234
SmoI CTYRAG 2 cut(s) 110, 1234
SsiI CCGC 2 cut(s) 14, 1305
SspMI CTAG 4 cut(s) 681, 1104, 1197, 1434
StyD4I CCNGG 1 cut(s) 1035
StyI CCWWGG 2 cut(s) 79, 1128
TaaI ACNGT 6 cut(s) 868, 957, 1057, 1192, 1214, 1424
TaiI ACGT 1 cut(s) 231
TaqI TCGA 3 cut(s) 989, 1010, 1473
TatI WGTACW 2 cut(s) 952, 1001
TauI GCSGC 2 cut(s) 16, 1307
TfiI GAWTC 7 cut(s) 25, 42, 1007, 1178, 1403, 1475, 1484
Tru1I TTAA 3 cut(s) 897, 935, 1235
Tru9I TTAA 3 cut(s) 897, 935, 1235
TscAI CASTG 4 cut(s) 693, 721, 871, 1029
TseFI GTSAC 2 cut(s) 548, 688
TseI GCWGC 5 cut(s) 152, 765, 878, 1574, 1577
Tsp45I GTSAC 2 cut(s) 548, 688
TspGWI ACGGA 3 cut(s) 636, 1313, 1460
TspRI CASTG 4 cut(s) 693, 721, 871, 1029
Vha464I CTTAAG 1 cut(s) 1234
XapI RAATTY 1 cut(s) 904
XbaI TCTAGA 1 cut(s) 1433
XmiI GTMKAC 2 cut(s) 1209, 1295
XspI CTAG 4 cut(s) 681, 1104, 1197, 1434
ZraI GACGTC 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.