No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G33740 AT4G33740 AT4G33740 AT4G33740 AT4G33740 |
| fragaria_vesca | FvH4_2g02971 FvH4_2g02971 |
| malus_domestica | MD05G1108600.v1.1 MD10G1112600.v1.1 |
| prunus_persica | Prupe.8G152300_v2.0.a1 |
| pyrus_communis | pycom05g10460 pycom10g09740 |
| rosa_chinensis | RchiOBHm_Chr1g0336871 RchiOBHm_Chr6g0247781 |
| rosa_laevigata | RLG00000015180 RLG00000029328 |
| rosa_multiflora | Rmu_sc0001983.1_g000010 Rmu_sc0004920.1_g000004 Rmu_sc0009569.1_g000009 Rmu_sc0018000.1_g000001 |
| rosa_roxburghii | Rroxscaffold_180G00433250 Rroxscaffold_4G00315280 Rroxscaffold_7G00213660 |
| rosa_rugosa | Rorug01G0128600 Rorug05G0528500 |
| rosa_samantha | Rh1AG149300 Rh1BG117700 Rh1CG140500 Rh1DG156600 Rh6AG043600 Rh6BG038300 Rh6CG037100 Rh6DG034200 |
| rosa_wichuraiana | Rw1G012080 Rw6G003780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1315 |
| Acc65I | GGTACC | 1 cut(s) | 1424 |
| AccB1I | GGYRCC | 1 cut(s) | 1424 |
| AccI | GTMKAC | 3 cut(s) | 73, 339, 411 |
| AciI | CCGC | 3 cut(s) | 10, 134, 939 |
| AclI | AACGTT | 1 cut(s) | 1133 |
| AclWI | GGATC | 7 cut(s) | 330, 366, 402, 438, 461, 474, 1490 |
| AcoI | YGGCCR | 1 cut(s) | 1438 |
| AcsI | RAATTY | 3 cut(s) | 172, 706, 1231 |
| AfaI | GTAC | 3 cut(s) | 925, 1079, 1426 |
| AflII | CTTAAG | 1 cut(s) | 1330 |
| AgsI | TTSAA | 2 cut(s) | 997, 1236 |
| AjnI | CCWGG | 1 cut(s) | 222 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1492, 1524 |
| AleI | CACNNNNGTG | 1 cut(s) | 1469 |
| AluBI | AGCT | 8 cut(s) | 143, 190, 275, 542, 851, 987, 1205, 1349 |
| AluI | AGCT | 8 cut(s) | 143, 190, 275, 542, 851, 987, 1205, 1349 |
| Alw21I | GWGCWC | 2 cut(s) | 859, 989 |
| Alw26I | GTCTC | 1 cut(s) | 1301 |
| AlwI | GGATC | 7 cut(s) | 330, 366, 402, 438, 461, 474, 1490 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1100 |
| AoxI | GGCC | 1 cut(s) | 1438 |
| ApeKI | GCWGC | 3 cut(s) | 1001, 1604, 1607 |
| ApoI | RAATTY | 3 cut(s) | 172, 706, 1231 |
| Asp718I | GGTACC | 1 cut(s) | 1424 |
| AsuHPI | GGTGA | 4 cut(s) | 61, 197, 212, 671 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 801, 834 |
| BamHI | GGATCC | 1 cut(s) | 466 |
| BanI | GGYRCC | 1 cut(s) | 1424 |
| BanII | GRGCYC | 1 cut(s) | 989 |
| BauI | CACGAG | 1 cut(s) | 759 |
| Bbv12I | GWGCWC | 2 cut(s) | 859, 989 |
| BbvI | GCAGC | 2 cut(s) | 1013, 1591 |
| BccI | CCATC | 6 cut(s) | 176, 650, 896, 1133, 1259, 1334 |
| BciT130I | CCWGG | 1 cut(s) | 224 |
| BciVI | GTATCC | 1 cut(s) | 1552 |
| BclI | TGATCA | 2 cut(s) | 3, 718 |
| BcoDI | GTCTC | 1 cut(s) | 1301 |
| BfaI | CTAG | 4 cut(s) | 792, 852, 860, 1368 |
| BfmI | CTRYAG | 2 cut(s) | 62, 1605 |
| BfrI | CTTAAG | 1 cut(s) | 1330 |
| BfuI | GTATCC | 1 cut(s) | 1552 |
| BglII | AGATCT | 2 cut(s) | 1334, 1552 |
| BisI | GCNGC | 4 cut(s) | 135, 1002, 1605, 1608 |
| BlsI | GCNGC | 4 cut(s) | 136, 1003, 1606, 1609 |
| Bme1390I | CCNGG | 1 cut(s) | 224 |
| BmiI | GGNNCC | 3 cut(s) | 26, 468, 1426 |
| BmrFI | CCNGG | 1 cut(s) | 224 |
| BmsI | GCATC | 3 cut(s) | 697, 775, 952 |
| BpmI | CTGGAG | 3 cut(s) | 297, 564, 1173 |
| BsaI | GGTCTC | 1 cut(s) | 1301 |
| BsaJI | CCNNGG | 1 cut(s) | 1176 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 33, 63 |
| Bse1I | ACTGG | 2 cut(s) | 1156, 1428 |
| Bse3DI | GCAATG | 1 cut(s) | 1562 |
| BseBI | CCWGG | 1 cut(s) | 224 |
| BseDI | CCNNGG | 1 cut(s) | 1176 |
| BseGI | GGATG | 8 cut(s) | 532, 661, 721, 787, 1144, 1149, 1486, 1594 |
| BseMI | GCAATG | 1 cut(s) | 1562 |
| BseMII | CTCAG | 5 cut(s) | 135, 858, 906, 1098, 1223 |
| BseNI | ACTGG | 2 cut(s) | 1156, 1428 |
| BseRI | GAGGAG | 6 cut(s) | 272, 509, 512, 552, 653, 1282 |
| BseXI | GCAGC | 2 cut(s) | 1013, 1591 |
| BsgI | GTGCAG | 2 cut(s) | 816, 1281 |
| BshFI | GGCC | 1 cut(s) | 1440 |
| BshNI | GGYRCC | 1 cut(s) | 1424 |
| BsiHKAI | GWGCWC | 2 cut(s) | 859, 989 |
| BsiSI | CCGG | 1 cut(s) | 1441 |
| BsmAI | GTCTC | 1 cut(s) | 1301 |
| BsmI | GAATGC | 2 cut(s) | 115, 1003 |
| BsnI | GGCC | 1 cut(s) | 1440 |
| Bso31I | GGTCTC | 1 cut(s) | 1301 |
| Bsp1286I | GDGCHC | 2 cut(s) | 859, 989 |
| BspACI | CCGC | 3 cut(s) | 10, 134, 939 |
| BspANI | GGCC | 1 cut(s) | 1440 |
| BspCNI | CTCAG | 5 cut(s) | 136, 857, 907, 1099, 1222 |
| BspHI | TCATGA | 2 cut(s) | 121, 751 |
| BspLI | GGNNCC | 3 cut(s) | 26, 468, 1426 |
| BspMAI | CTGCAG | 2 cut(s) | 66, 1609 |
| BspPI | GGATC | 7 cut(s) | 330, 366, 402, 438, 461, 474, 1490 |
| BspQI | GCTCTTC | 1 cut(s) | 480 |
| BspT107I | GGYRCC | 1 cut(s) | 1424 |
| BspTI | CTTAAG | 1 cut(s) | 1330 |
| BspTNI | GGTCTC | 1 cut(s) | 1301 |
| BsrDI | GCAATG | 1 cut(s) | 1562 |
| BsrI | ACTGG | 2 cut(s) | 1156, 1428 |
| BssECI | CCNNGG | 1 cut(s) | 1176 |
| BssSI | CACGAG | 1 cut(s) | 759 |
| BssT1I | CCWWGG | 1 cut(s) | 1176 |
| Bst2BI | CACGAG | 1 cut(s) | 759 |
| Bst2UI | CCWGG | 1 cut(s) | 224 |
| Bst4CI | ACNGT | 1 cut(s) | 1102 |
| BstAFI | CTTAAG | 1 cut(s) | 1330 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 2 cut(s) | 1039, 1546 |
| BstDEI | CTNAG | 5 cut(s) | 144, 844, 915, 1107, 1209 |
| BstF5I | GGATG | 8 cut(s) | 532, 661, 721, 787, 1144, 1149, 1486, 1594 |
| BstMAI | GTCTC | 1 cut(s) | 1301 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 61, 140, 755, 794 |
| BstNI | CCWGG | 1 cut(s) | 224 |
| BstNSI | RCATGY | 1 cut(s) | 59 |
| BstSCI | CCNGG | 1 cut(s) | 222 |
| BstSFI | CTRYAG | 2 cut(s) | 62, 1605 |
| BstV1I | GCAGC | 2 cut(s) | 1013, 1591 |
| BstX2I | RGATCY | 3 cut(s) | 466, 1334, 1552 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 979 |
| BstYI | RGATCY | 3 cut(s) | 466, 1334, 1552 |
| BsuI | GTATCC | 1 cut(s) | 1552 |
| BsuRI | GGCC | 1 cut(s) | 1440 |
| BtsCI | GGATG | 8 cut(s) | 532, 661, 721, 787, 1144, 1149, 1486, 1594 |
| BtsI | GCAGTG | 2 cut(s) | 804, 1011 |
| BtsIMutI | CAGTG | 3 cut(s) | 804, 1011, 1435 |
| Cac8I | GCNNGC | 2 cut(s) | 1039, 1546 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1100 |
| CciI | TCATGA | 2 cut(s) | 121, 751 |
| Csp6I | GTAC | 3 cut(s) | 924, 1078, 1425 |
| CviQI | GTAC | 3 cut(s) | 924, 1078, 1425 |
| DdeI | CTNAG | 5 cut(s) | 144, 844, 915, 1107, 1209 |
| DraI | TTTAAA | 1 cut(s) | 930 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1315 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1315 |
| EaeI | YGGCCR | 1 cut(s) | 1438 |
| Ecl136II | GAGCTC | 1 cut(s) | 987 |
| Eco130I | CCWWGG | 1 cut(s) | 1176 |
| Eco24I | GRGCYC | 1 cut(s) | 989 |
| Eco31I | GGTCTC | 1 cut(s) | 1301 |
| Eco53kI | GAGCTC | 1 cut(s) | 987 |
| EcoICRI | GAGCTC | 1 cut(s) | 987 |
| EcoRI | GAATTC | 1 cut(s) | 706 |
| EcoRII | CCWGG | 1 cut(s) | 222 |
| EcoT14I | CCWWGG | 1 cut(s) | 1176 |
| EcoT38I | GRGCYC | 1 cut(s) | 989 |
| ErhI | CCWWGG | 1 cut(s) | 1176 |
| FbaI | TGATCA | 2 cut(s) | 3, 718 |
| FblI | GTMKAC | 3 cut(s) | 73, 339, 411 |
| Fnu4HI | GCNGC | 4 cut(s) | 135, 1002, 1605, 1608 |
| FokI | GGATG | 8 cut(s) | 539, 668, 728, 794, 1151, 1156, 1493, 1601 |
| FriOI | GRGCYC | 1 cut(s) | 989 |
| Fsp4HI | GCNGC | 4 cut(s) | 135, 1002, 1605, 1608 |
| FspBI | CTAG | 4 cut(s) | 792, 852, 860, 1368 |
| GluI | GCNGC | 4 cut(s) | 135, 1002, 1605, 1608 |
| GsuI | CTGGAG | 3 cut(s) | 297, 564, 1173 |
| HaeIII | GGCC | 1 cut(s) | 1440 |
| HapII | CCGG | 1 cut(s) | 1441 |
| HpaII | CCGG | 1 cut(s) | 1441 |
| HphI | GGTGA | 4 cut(s) | 61, 197, 212, 671 |
| Hpy166II | GTNNAC | 4 cut(s) | 74, 340, 412, 1117 |
| Hpy188III | TCNNGA | 8 cut(s) | 122, 599, 722, 752, 860, 891, 1275, 1556 |
| Hpy8I | GTNNAC | 4 cut(s) | 74, 340, 412, 1117 |
| HpyAV | CCTTC | 4 cut(s) | 124, 224, 578, 646 |
| HpyCH4III | ACNGT | 1 cut(s) | 1102 |
| HpyCH4IV | ACGT | 2 cut(s) | 1089, 1133 |
| HpyCH4V | TGCA | 6 cut(s) | 64, 155, 797, 1001, 1262, 1607 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 61, 140, 755, 794 |
| HpyF3I | CTNAG | 5 cut(s) | 144, 844, 915, 1107, 1209 |
| HpySE526I | ACGT | 2 cut(s) | 1089, 1133 |
| KpnI | GGTACC | 1 cut(s) | 1428 |
| Ksp22I | TGATCA | 2 cut(s) | 3, 718 |
| LguI | GCTCTTC | 1 cut(s) | 480 |
| LmnI | GCTCC | 1 cut(s) | 539 |
| Lsp1109I | GCAGC | 2 cut(s) | 1013, 1591 |
| LweI | GCATC | 3 cut(s) | 697, 775, 952 |
| MaeI | CTAG | 4 cut(s) | 792, 852, 860, 1368 |
| MaeII | ACGT | 2 cut(s) | 1089, 1133 |
| MaeIII | GTNAC | 4 cut(s) | 799, 934, 1090, 1471 |
| MfeI | CAATTG | 1 cut(s) | 1500 |
| MflI | RGATCY | 3 cut(s) | 466, 1334, 1552 |
| MhlI | GDGCHC | 2 cut(s) | 859, 989 |
| MluCI | AATT | 8 cut(s) | 172, 706, 769, 886, 1231, 1239, 1251, 1500 |
| MlyI | GAGTC | 7 cut(s) | 7, 51, 1025, 1118, 1220, 1424, 1454 |
| MmeI | TCCRAC | 2 cut(s) | 1116, 1400 |
| MseI | TTAA | 5 cut(s) | 98, 234, 929, 957, 1331 |
| MslI | CAYNNNNRTG | 2 cut(s) | 120, 1469 |
| MspA1I | CMGCKG | 2 cut(s) | 275, 1349 |
| MspCI | CTTAAG | 1 cut(s) | 1330 |
| MspI | CCGG | 1 cut(s) | 1441 |
| MspR9I | CCNGG | 1 cut(s) | 224 |
| MunI | CAATTG | 1 cut(s) | 1500 |
| Mva1269I | GAATGC | 2 cut(s) | 115, 1003 |
| MvaI | CCWGG | 1 cut(s) | 224 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 61, 140, 755, 794 |
| NlaIV | GGNNCC | 3 cut(s) | 26, 468, 1426 |
| NmeAIII | GCCGAG | 1 cut(s) | 1558 |
| NmuCI | GTSAC | 2 cut(s) | 799, 1471 |
| NspI | RCATGY | 1 cut(s) | 59 |
| OliI | CACNNNNGTG | 1 cut(s) | 1469 |
| PagI | TCATGA | 2 cut(s) | 121, 751 |
| PciSI | GCTCTTC | 1 cut(s) | 480 |
| PctI | GAATGC | 2 cut(s) | 115, 1003 |
| PfeI | GAWTC | 4 cut(s) | 1280, 1433, 1505, 1514 |
| PkrI | GCNGC | 4 cut(s) | 136, 1003, 1606, 1609 |
| PleI | GAGTC | 7 cut(s) | 7, 50, 1024, 1117, 1220, 1423, 1454 |
| PpsI | GAGTC | 7 cut(s) | 7, 50, 1024, 1117, 1220, 1423, 1454 |
| Psp124BI | GAGCTC | 1 cut(s) | 989 |
| Psp1406I | AACGTT | 1 cut(s) | 1133 |
| Psp6I | CCWGG | 1 cut(s) | 222 |
| PspGI | CCWGG | 1 cut(s) | 222 |
| PspN4I | GGNNCC | 3 cut(s) | 26, 468, 1426 |
| PstI | CTGCAG | 2 cut(s) | 66, 1609 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1100 |
| PsuI | RGATCY | 3 cut(s) | 466, 1334, 1552 |
| PvuII | CAGCTG | 2 cut(s) | 275, 1349 |
| RsaI | GTAC | 3 cut(s) | 925, 1079, 1426 |
| RsaNI | GTAC | 3 cut(s) | 924, 1078, 1425 |
| RseI | CAYNNNNRTG | 2 cut(s) | 120, 1469 |
| SacI | GAGCTC | 1 cut(s) | 989 |
| SapI | GCTCTTC | 1 cut(s) | 480 |
| SaqAI | TTAA | 5 cut(s) | 98, 234, 929, 957, 1331 |
| SatI | GCNGC | 4 cut(s) | 135, 1002, 1605, 1608 |
| SchI | GAGTC | 7 cut(s) | 7, 51, 1025, 1118, 1220, 1424, 1454 |
| ScrFI | CCNGG | 1 cut(s) | 224 |
| SduI | GDGCHC | 2 cut(s) | 859, 989 |
| SfaNI | GCATC | 3 cut(s) | 697, 775, 952 |
| SfcI | CTRYAG | 2 cut(s) | 62, 1605 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 120, 1469 |
| SmlI | CTYRAG | 1 cut(s) | 1330 |
| SmoI | CTYRAG | 1 cut(s) | 1330 |
| Sse9I | AATT | 8 cut(s) | 172, 706, 769, 886, 1231, 1239, 1251, 1500 |
| SsiI | CCGC | 3 cut(s) | 10, 134, 939 |
| SspMI | CTAG | 4 cut(s) | 792, 852, 860, 1368 |
| SstI | GAGCTC | 1 cut(s) | 989 |
| StyD4I | CCNGG | 1 cut(s) | 222 |
| StyI | CCWWGG | 1 cut(s) | 1176 |
| TaaI | ACNGT | 1 cut(s) | 1102 |
| TaiI | ACGT | 2 cut(s) | 1092, 1136 |
| TasI | AATT | 8 cut(s) | 172, 706, 769, 886, 1231, 1239, 1251, 1500 |
| TauI | GCSGC | 1 cut(s) | 137 |
| TfiI | GAWTC | 4 cut(s) | 1280, 1433, 1505, 1514 |
| Tru1I | TTAA | 5 cut(s) | 98, 234, 929, 957, 1331 |
| Tru9I | TTAA | 5 cut(s) | 98, 234, 929, 957, 1331 |
| TscAI | CASTG | 3 cut(s) | 804, 1011, 1435 |
| TseFI | GTSAC | 2 cut(s) | 799, 1471 |
| TseI | GCWGC | 3 cut(s) | 1001, 1604, 1607 |
| Tsp45I | GTSAC | 2 cut(s) | 799, 1471 |
| TspGWI | ACGGA | 1 cut(s) | 1490 |
| TspRI | CASTG | 3 cut(s) | 804, 1011, 1435 |
| Vha464I | CTTAAG | 1 cut(s) | 1330 |
| XapI | RAATTY | 3 cut(s) | 172, 706, 1231 |
| XbaI | TCTAGA | 1 cut(s) | 859 |
| XceI | RCATGY | 1 cut(s) | 59 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1174 |
| XmiI | GTMKAC | 3 cut(s) | 73, 339, 411 |
| XspI | CTAG | 4 cut(s) | 792, 852, 860, 1368 |