Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003510

Physical Location & Seq

Genomic Coordinates Reverse (-)

12957200 .. 12958273

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g09740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAAGAGAAAGAAAGAGAAGATGATGGGAATGAGAATGATGGTGAAAAGAAAGACGGTGAAGAGAGAGAGGATCAAGAAGAACATGAGAGTTCATCAGATCGATCAAGATAATGAAACCCATGATAAGAATGCTCATGAAGCACGAGAGGAGAATTACAAGGGGGATGATGCTTCTAGTGCAGTGGCCCATGAAGTTACAAGCACTGAAACTGAGAAAGTAAGTTCGGAAAACTTAAATGAGAACCCAGAAACTACTATACTAGAAAAGGACAATTCAACAATGGTGGAAGATAGAATGGCTGAAAATGGTACTATTTTAAATGTAGGTGCAAGTGAAGAGAAAGTTAATGGTAATATGGCCAATCCTGCGGAGAGCTCACTTTTACATGAAAAAGTGAAAACACAATCAAATGATGAACCAGAAGCATGGAATAACTCAACAATGGTGAGTGCCGAAGCTAACGATAATTCAACAATAGTGAGTACAGAAGCAAGCAATAACCCTACAGAAACCAACCAGGCAACTGGTTCATACCAGCAGAACGGTACAGAGATCGTATCTGAGTCAGCTCACTCTGAAATTGCGACAGTGGATGGTACGAGTACTGGAGAAAGCGTGGCCATACAAACCATGGTTATGGAACAGGCTAACAACACAGCTTCTCAGAACAATGAATCTGACTCAAATTCAACAATATCCACTAAAATTGAGAATGCAGATGGGGCATTGGGAGAATCATCTTCCTTCTCTAATAAGGTAGCAACTAACATGTCAGAGAATATCTTAAGATCTGATGGAACAGCTGAAACAGAGGGTGGTTCTAGATCTTCATCGTTAAATGAGGCCACAGATGCCATTCAGAATGAAGAGTCTAATGGTACAAGTGAATCGGACAGGACAGATGAAGGTTCAGACTTCACAAATGGGACACAGGACGCAACTCAGCGTGATCCAATTGATTCTTCTGATTCCCATATCACCCAAGACAAGAAAGAGGTTCGCACGGATCTAACTACATTGCCGGAGATAACAACCGAGGGGAATGAGAATGGAGAGGCTGCAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

38.72

Weight (kDa)

4.48

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33740 AT4G33740 AT4G33740 AT4G33740 AT4G33740
fragaria_vesca	FvH4_2g02971 FvH4_2g02971
malus_domestica	MD05G1108600.v1.1 MD10G1112600.v1.1
prunus_persica	Prupe.8G152300_v2.0.a1
pyrus_communis	pycom05g10460 pycom10g09740
rosa_chinensis	RchiOBHm_Chr1g0336871 RchiOBHm_Chr6g0247781
rosa_laevigata	RLG00000015180 RLG00000029328
rosa_multiflora	Rmu_sc0001983.1_g000010 Rmu_sc0004920.1_g000004 Rmu_sc0009569.1_g000009 Rmu_sc0018000.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433250 Rroxscaffold_4G00315280 Rroxscaffold_7G00213660
rosa_rugosa	Rorug01G0128600 Rorug05G0528500
rosa_samantha	Rh1AG149300 Rh1BG117700 Rh1CG140500 Rh1DG156600 Rh6AG043600 Rh6BG038300 Rh6CG037100 Rh6DG034200
rosa_wichuraiana	Rw1G012080 Rw6G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	371
AclWI	GGATC	3 cut(s)	80, 947, 1017
AcoI	YGGCCR	2 cut(s)	360, 621
AcsI	RAATTY	1 cut(s)	688
AfaI	GTAC	6 cut(s)	313, 487, 550, 601, 607, 883
AflII	CTTAAG	1 cut(s)	787
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	3 cut(s)	279, 474, 693
AjnI	CCWGG	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	949, 981
AluBI	AGCT	5 cut(s)	378, 461, 572, 662, 806
AluI	AGCT	5 cut(s)	378, 461, 572, 662, 806
Alw21I	GWGCWC	1 cut(s)	380
AlwI	GGATC	3 cut(s)	80, 947, 1017
AoxI	GGCC	4 cut(s)	186, 360, 621, 846
ApeKI	GCWGC	2 cut(s)	1061, 1064
ApoI	RAATTY	1 cut(s)	688
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	4 cut(s)	55, 70, 460, 973
BalI	TGGCCA	2 cut(s)	362, 623
BanII	GRGCYC	1 cut(s)	380
BauI	CACGAG	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	1048
BccI	CCATC	5 cut(s)	19, 34, 590, 716, 791
BciT130I	CCWGG	1 cut(s)	521
BfaI	CTAG	3 cut(s)	177, 263, 825
BfmI	CTRYAG	2 cut(s)	507, 1062
BfrI	CTTAAG	1 cut(s)	787
BglII	AGATCT	2 cut(s)	791, 827
BisI	GCNGC	2 cut(s)	1062, 1065
BlsI	GCNGC	2 cut(s)	1063, 1066
BmcAI	AGTACT	1 cut(s)	607
Bme1390I	CCNGG	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	2 cut(s)	160, 844
BpmI	CTGGAG	1 cut(s)	630
Bsa29I	ATCGAT	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	832
BsaJI	CCNNGG	2 cut(s)	633, 1038
BsaXI	ACNNNNNCTCC	2 cut(s)	603, 633
Bse1I	ACTGG	2 cut(s)	532, 613
Bse3DI	GCAATG	1 cut(s)	1019
Bse8I	GATNNNNATC	1 cut(s)	832
BseBI	CCWGG	1 cut(s)	521
BseCI	ATCGAT	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	633, 1038
BseGI	GGATG	2 cut(s)	172, 601
BseJI	GATNNNNATC	1 cut(s)	832
BseMI	GCAATG	1 cut(s)	1019
BseMII	CTCAG	4 cut(s)	204, 555, 680, 959
BseNI	ACTGG	2 cut(s)	532, 613
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	1048
BsgI	GTGCAG	1 cut(s)	201
BshFI	GGCC	4 cut(s)	188, 362, 623, 848
BshVI	ATCGAT	1 cut(s)	102
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	1025
BslFI	GGGAC	1 cut(s)	943
BsmFI	GGGAC	1 cut(s)	943
BsmI	GAATGC	2 cut(s)	136, 721
BsnI	GGCC	4 cut(s)	188, 362, 623, 848
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	8 cut(s)	72, 99, 103, 555, 791, 827, 952, 1009
Bsp19I	CCATGG	1 cut(s)	633
BspACI	CCGC	1 cut(s)	371
BspANI	GGCC	4 cut(s)	188, 362, 623, 848
BspCNI	CTCAG	4 cut(s)	205, 556, 679, 958
BspDI	ATCGAT	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	1066
BspPI	GGATC	3 cut(s)	80, 947, 1017
BspTI	CTTAAG	1 cut(s)	787
BsrDI	GCAATG	1 cut(s)	1019
BsrI	ACTGG	2 cut(s)	532, 613
BssECI	CCNNGG	2 cut(s)	633, 1038
BssMI	GATC	8 cut(s)	72, 99, 103, 555, 791, 827, 952, 1009
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	633
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	3 cut(s)	58, 548, 592
Bst6I	CTCTTC	3 cut(s)	56, 333, 864
BstAFI	CTTAAG	1 cut(s)	787
BstC8I	GCNNGC	1 cut(s)	496
BstDEI	CTNAG	4 cut(s)	213, 564, 666, 945
BstDSI	CCRYGG	1 cut(s)	633
BstF5I	GGATG	2 cut(s)	172, 601
BstKTI	GATC	8 cut(s)	75, 102, 106, 558, 794, 830, 955, 1012
BstMBI	GATC	8 cut(s)	72, 99, 103, 555, 791, 827, 952, 1009
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 179, 368, 725, 854
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	2 cut(s)	507, 1062
BstV1I	GCAGC	1 cut(s)	1048
BstX2I	RGATCY	3 cut(s)	791, 827, 1009
BstXI	CCANNNNNNTGG	3 cut(s)	429, 527, 640
BstYI	RGATCY	3 cut(s)	791, 827, 1009
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	4 cut(s)	188, 362, 623, 848
BsuTUI	ATCGAT	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	633
BtsCI	GGATG	2 cut(s)	172, 601
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	3 cut(s)	189, 204, 597
Cac8I	GCNNGC	1 cut(s)	496
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	187
ClaI	ATCGAT	1 cut(s)	102
CseI	GACGC	1 cut(s)	947
Csp6I	GTAC	6 cut(s)	312, 486, 549, 600, 606, 882
CspCI	CAANNNNNGTGG	4 cut(s)	267, 302, 691, 726
CviAII	CATG	8 cut(s)	85, 122, 137, 191, 389, 429, 634, 772
CviQI	GTAC	6 cut(s)	312, 486, 549, 600, 606, 882
DdeI	CTNAG	4 cut(s)	213, 564, 666, 945
DpnI	GATC	8 cut(s)	74, 101, 105, 557, 793, 829, 954, 1011
DpnII	GATC	8 cut(s)	72, 99, 103, 555, 791, 827, 952, 1009
DraI	TTTAAA	1 cut(s)	321
EaeI	YGGCCR	2 cut(s)	360, 621
Eam1104I	CTCTTC	3 cut(s)	56, 333, 864
EarI	CTCTTC	3 cut(s)	56, 333, 864
Ecl136II	GAGCTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	378
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	633
EcoT38I	GRGCYC	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	633
FaeI	CATG	8 cut(s)	88, 125, 140, 194, 392, 432, 637, 775
FaqI	GGGAC	1 cut(s)	943
FatI	CATG	8 cut(s)	84, 121, 136, 190, 388, 428, 633, 771
Fnu4HI	GCNGC	2 cut(s)	1062, 1065
FokI	GGATG	2 cut(s)	179, 608
FriOI	GRGCYC	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	1062, 1065
FspBI	CTAG	3 cut(s)	177, 263, 825
GluI	GCNGC	2 cut(s)	1062, 1065
GsuI	CTGGAG	1 cut(s)	630
HaeIII	GGCC	4 cut(s)	188, 362, 623, 848
HapII	CCGG	1 cut(s)	1025
HgaI	GACGC	1 cut(s)	947
Hin1II	CATG	8 cut(s)	88, 125, 140, 194, 392, 432, 637, 775
HinfI	GANTC	8 cut(s)	566, 677, 683, 737, 872, 890, 962, 971
HpaII	CCGG	1 cut(s)	1025
HphI	GGTGA	4 cut(s)	55, 70, 460, 973
Hpy188III	TCNNGA	4 cut(s)	76, 107, 137, 825
HpyAV	CCTTC	2 cut(s)	757, 902
HpyCH4III	ACNGT	3 cut(s)	58, 548, 592
HpyCH4V	TGCA	4 cut(s)	182, 332, 719, 1064
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 179, 368, 725, 854
HpyF3I	CTNAG	4 cut(s)	213, 564, 666, 945
Hsp92II	CATG	8 cut(s)	88, 125, 140, 194, 392, 432, 637, 775
Kzo9I	GATC	8 cut(s)	72, 99, 103, 555, 791, 827, 952, 1009
Lsp1109I	GCAGC	1 cut(s)	1048
LweI	GCATC	2 cut(s)	160, 844
MaeI	CTAG	3 cut(s)	177, 263, 825
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	8 cut(s)	74, 101, 105, 557, 793, 829, 954, 1011
MboI	GATC	8 cut(s)	72, 99, 103, 555, 791, 827, 952, 1009
MfeI	CAATTG	1 cut(s)	957
MflI	RGATCY	3 cut(s)	791, 827, 1009
MhlI	GDGCHC	1 cut(s)	380
MlsI	TGGCCA	2 cut(s)	362, 623
MluCI	AATT	7 cut(s)	154, 274, 469, 582, 688, 708, 957
MluNI	TGGCCA	2 cut(s)	362, 623
MlyI	GAGTC	3 cut(s)	575, 677, 881
MnlI	CCTC	7 cut(s)	63, 142, 808, 838, 991, 1033, 1051
Mox20I	TGGCCA	2 cut(s)	362, 623
MscI	TGGCCA	2 cut(s)	362, 623
MseI	TTAA	5 cut(s)	236, 320, 348, 788, 839
MslI	CAYNNNNRTG	1 cut(s)	638
Msp20I	TGGCCA	2 cut(s)	362, 623
MspA1I	CMGCKG	1 cut(s)	806
MspCI	CTTAAG	1 cut(s)	787
MspI	CCGG	1 cut(s)	1025
MspR9I	CCNGG	1 cut(s)	521
MunI	CAATTG	1 cut(s)	957
Mva1269I	GAATGC	2 cut(s)	136, 721
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	5 cut(s)	140, 179, 368, 725, 854
NcoI	CCATGG	1 cut(s)	633
NdeII	GATC	8 cut(s)	72, 99, 103, 555, 791, 827, 952, 1009
NlaIII	CATG	8 cut(s)	88, 125, 140, 194, 392, 432, 637, 775
NspI	RCATGY	1 cut(s)	775
PagI	TCATGA	1 cut(s)	136
PciI	ACATGT	1 cut(s)	771
PctI	GAATGC	2 cut(s)	136, 721
PfeI	GAWTC	5 cut(s)	677, 737, 890, 962, 971
PkrI	GCNGC	2 cut(s)	1063, 1066
PleI	GAGTC	3 cut(s)	574, 677, 880
PpsI	GAGTC	3 cut(s)	574, 677, 880
PscI	ACATGT	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	1066
PsuI	RGATCY	3 cut(s)	791, 827, 1009
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	6 cut(s)	313, 487, 550, 601, 607, 883
RsaNI	GTAC	6 cut(s)	312, 486, 549, 600, 606, 882
RseI	CAYNNNNRTG	1 cut(s)	638
SacI	GAGCTC	1 cut(s)	380
SaqAI	TTAA	5 cut(s)	236, 320, 348, 788, 839
SatI	GCNGC	2 cut(s)	1062, 1065
Sau3AI	GATC	8 cut(s)	72, 99, 103, 555, 791, 827, 952, 1009
Sau96I	GGNCC	1 cut(s)	187
ScaI	AGTACT	1 cut(s)	607
SchI	GAGTC	3 cut(s)	575, 677, 881
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	9 cut(s)	331, 380, 463, 574, 664, 762, 808, 913, 1002
SfaNI	GCATC	2 cut(s)	160, 844
SfcI	CTRYAG	2 cut(s)	507, 1062
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	787
SmoI	CTYRAG	1 cut(s)	787
Sse9I	AATT	7 cut(s)	154, 274, 469, 582, 688, 708, 957
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	3 cut(s)	177, 263, 825
SstI	GAGCTC	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	633
TaaI	ACNGT	3 cut(s)	58, 548, 592
TaqI	TCGA	1 cut(s)	102
TasI	AATT	7 cut(s)	154, 274, 469, 582, 688, 708, 957
TatI	WGTACW	2 cut(s)	485, 605
TfiI	GAWTC	5 cut(s)	677, 737, 890, 962, 971
Tru1I	TTAA	5 cut(s)	236, 320, 348, 788, 839
Tru9I	TTAA	5 cut(s)	236, 320, 348, 788, 839
TscAI	CASTG	3 cut(s)	189, 211, 597
TseI	GCWGC	2 cut(s)	1061, 1064
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	3 cut(s)	189, 211, 597
Vha464I	CTTAAG	1 cut(s)	787
XapI	RAATTY	1 cut(s)	688
XbaI	TCTAGA	1 cut(s)	824
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	631
XspI	CTAG	3 cut(s)	177, 263, 825
ZrmI	AGTACT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.