Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003510

Physical Location & Seq

Genomic Coordinates Reverse (-)

13843155 .. 13844816

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1662 bp

ATGATCAAGCGGACACCGAGTAGGAACCAAAGAACCAAAGGAATCAGGGTGAAGCATGTTCTGCAGATTTGTCTGCTGCTTGGGGTCTGCTTTTGGTTACTCTATCAGGTCAAGCATTCCCACGATAAGAAAGTGGCATTAGATAAGAAAGATGAAAAAATCTCAACCGGAAGCCTGAGTGAGGGTGAGCTTCCAAAACTTGGGAGGAAAGACCTTCCAAAACTTGAAATCCCTAAAAATGAGAAACAAGAGGAAGAGGAGGAAGGCGAAGGAGCAGGAGAGGAAGACGAGAAACCTGAAGTAGATGTGCATGAAGATGAGGATCAGAAACATGAAGTAGACGAGCATGAAGAAGAGGATCAGAAGCATGAAGTAGGAGAGGGAGAAGAAGAGGATCCAAAGCATGAAATCGGAAAGCGAGAAGAAGAGGATCTGAAGCATGAGGCAGAAGAGCAAGAGGAGGAAGAAAACAAGAACGAGGAGATGGAAGATGACGGAAGAGGAGCTGGAGATGATGAGATAGATGAAAATGAGCAAGAGGGGAAAGAAGGGGAAGTGGAACATGATGAGGAATTTATAGATGAGGAGAAAGAAAGAGAAGATGATGGGAATGAGAAAGATGGTGATAAGAAGGACGGTGAAGAGAGAGAGGAACAAGAAGAACATGAGAATTCATCAGATGACCAAGATAATGATACCCATGATAAGAATGCTCATGAAGCACGAGAGGAGAATTACAAGGGGGATGATGCTTCTAGTGCAGTGACCCATGATAATCAAGTTATAAGCACTGAAACTGAGAAAGTAAGTTCGGAAAACTCAAATGAGAACCCCGAAACTACTACGCTAGAAAAGGACAATTCAACAATGGTGGAAGAGAGAATGGCTGGAAATGGTACTATTTTAAATGTAGCTACAAGTGAAGAGAAAGTTGATGGTAATATGTCCAATCCTGCCGAGAGCTCACTCTTAAATGCGATGGTGAAAACACAATCTAATGATCAATCAGAAGCAGCAGGAAATAACTCAACCGTGGTGAGTACCGAAGCTAAAGATAATTTGACAATGGTGAGTACAGAAGCAGGCAATAACTCAACAGATATCAATCAGGCAACTGGTTCATACCAGCAGAACTTAACAGAGACTGTATCTGAGTCAGCTCACTCTGAAAATGGAACGGTGGATGGTAGGACTACTGGAGAGGACGTGATCACACAAACCATGGTTGTGGAACAGGCTAACAACACAGTTGCTGAGAACAATGAATCTGTCTCAAATTCAACAATATCCATTAAAATTGAGAATGCAGATGGGGCGTCGGGAGAATCATCTAACTCCTCTAATACAGTAGCGACTAATGTGTCAGAGAATATCGTAAGATCTGATGGAGCAGCTGAAACAGAGGATGGTTCTGGATCTTCATCGATAAAGGAGACCACAGATGCCGCTCAGAATGAAGAGTCTAATGGTACAAGTGAATCGGACAGGACGGGTGAAGGTTCAGACTCCACAAATGGTACAGAGGACACGACTCATCATGAGCCAATTGATTCTTCTGATTCCCATATCACCCAAGACGAGAAAGAGGCTCGCATTGATCTAACTACACTGCCAGAGATAACAACCGAGGGGGATGAGAATGGAGAGGTTGCAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

554

Amino Acids

60.77

Weight (kDa)

4.22

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33740 AT4G33740 AT4G33740 AT4G33740 AT4G33740
fragaria_vesca	FvH4_2g02971 FvH4_2g02971
malus_domestica	MD05G1108600.v1.1 MD10G1112600.v1.1
prunus_persica	Prupe.8G152300_v2.0.a1
pyrus_communis	pycom05g10460 pycom10g09740
rosa_chinensis	RchiOBHm_Chr1g0336871 RchiOBHm_Chr6g0247781
rosa_laevigata	RLG00000015180 RLG00000029328
rosa_multiflora	Rmu_sc0001983.1_g000010 Rmu_sc0004920.1_g000004 Rmu_sc0009569.1_g000009 Rmu_sc0018000.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433250 Rroxscaffold_4G00315280 Rroxscaffold_7G00213660
rosa_rugosa	Rorug01G0128600 Rorug05G0528500
rosa_samantha	Rh1AG149300 Rh1BG117700 Rh1CG140500 Rh1DG156600 Rh6AG043600 Rh6BG038300 Rh6CG037100 Rh6DG034200
rosa_wichuraiana	Rw1G012080 Rw6G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	785
AasI	GACNNNNNNGTC	1 cut(s)	1360
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccBSI	CCGCTC	1 cut(s)	1448
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	2 cut(s)	10, 1446
AclWI	GGATC	6 cut(s)	330, 366, 389, 402, 438, 1423
AcsI	RAATTY	3 cut(s)	572, 670, 1276
AcuI	CTGAAG	2 cut(s)	318, 455
AcyI	GRCGYC	1 cut(s)	1316
AfaI	GTAC	5 cut(s)	898, 1042, 1075, 1471, 1519
AfiI	CCNNNNNNNGG	2 cut(s)	181, 200
AgsI	TTSAA	3 cut(s)	227, 864, 1281
AjiI	CACGTC	1 cut(s)	1207
AjuI	GAANNNNNNNTTGG	2 cut(s)	1537, 1569
AluBI	AGCT	7 cut(s)	190, 506, 914, 963, 1049, 1160, 1394
AluI	AGCT	7 cut(s)	190, 506, 914, 963, 1049, 1160, 1394
Alw21I	GWGCWC	1 cut(s)	965
Alw26I	GTCTC	3 cut(s)	1136, 1276, 1427
AlwI	GGATC	6 cut(s)	330, 366, 389, 402, 438, 1423
AlwNI	CAGNNNCTG	2 cut(s)	1145, 1253
ApeKI	GCWGC	4 cut(s)	76, 1013, 1391, 1652
ApoI	RAATTY	3 cut(s)	572, 670, 1276
AsuHPI	GGTGA	9 cut(s)	61, 197, 635, 650, 994, 1048, 1081, 1505, 1561
BamHI	GGATCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	965
BauI	CACGAG	1 cut(s)	723
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	965
BbvI	GCAGC	3 cut(s)	63, 1025, 1403
BccI	CCATC	9 cut(s)	478, 599, 614, 929, 973, 1178, 1304, 1379, 1400
BclI	TGATCA	3 cut(s)	3, 1000, 1209
BcoDI	GTCTC	3 cut(s)	1136, 1276, 1427
BfaI	CTAG	2 cut(s)	756, 848
BfmI	CTRYAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	1379
BisI	GCNGC	5 cut(s)	77, 1014, 1392, 1446, 1653
BlsI	GCNGC	5 cut(s)	78, 1015, 1393, 1447, 1654
BmgBI	CACGTC	1 cut(s)	1207
BmiI	GGNNCC	2 cut(s)	26, 396
BmsI	GCATC	2 cut(s)	739, 1432
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	2 cut(s)	528, 1218
Bsa29I	ATCGAT	1 cut(s)	1424
BsaBI	GATNNNNATC	3 cut(s)	321, 1104, 1420
BsaHI	GRCGYC	1 cut(s)	1316
BsaI	GGTCTC	1 cut(s)	1427
BsaJI	CCNNGG	3 cut(s)	1032, 1221, 1626
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	1191, 1221
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 200
Bse1I	ACTGG	2 cut(s)	1120, 1201
Bse8I	GATNNNNATC	3 cut(s)	321, 1104, 1420
BseCI	ATCGAT	1 cut(s)	1424
BseDI	CCNNGG	3 cut(s)	1032, 1221, 1626
BseGI	GGATG	4 cut(s)	751, 1189, 1411, 1639
BseJI	GATNNNNATC	3 cut(s)	321, 1104, 1420
BseLI	CCNNNNNNNGG	2 cut(s)	181, 200
BseMII	CTCAG	5 cut(s)	167, 789, 1143, 1245, 1463
BseNI	ACTGG	2 cut(s)	1120, 1201
BseRI	GAGGAG	7 cut(s)	272, 473, 494, 516, 599, 743, 1327
BseXI	GCAGC	3 cut(s)	63, 1025, 1403
BsgI	GTGCAG	1 cut(s)	780
BshVI	ATCGAT	1 cut(s)	1424
BsiHKAI	GWGCWC	1 cut(s)	965
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	181, 200
BsmAI	GTCTC	3 cut(s)	1136, 1276, 1427
BsmI	GAATGC	3 cut(s)	115, 715, 1309
Bso31I	GGTCTC	1 cut(s)	1427
Bsp1286I	GDGCHC	1 cut(s)	965
Bsp19I	CCATGG	1 cut(s)	1221
BspACI	CCGC	2 cut(s)	10, 1446
BspCNI	CTCAG	5 cut(s)	168, 790, 1144, 1246, 1462
BspDI	ATCGAT	1 cut(s)	1424
BspHI	TCATGA	2 cut(s)	715, 1537
BspLI	GGNNCC	2 cut(s)	26, 396
BspMAI	CTGCAG	1 cut(s)	66
BspPI	GGATC	6 cut(s)	330, 366, 389, 402, 438, 1423
BspQI	GCTCTTC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	1427
BsrBI	CCGCTC	1 cut(s)	1448
BsrI	ACTGG	2 cut(s)	1120, 1201
BssECI	CCNNGG	3 cut(s)	1032, 1221, 1626
BssNI	GRCGYC	1 cut(s)	1316
BssSI	CACGAG	1 cut(s)	723
BssT1I	CCWWGG	1 cut(s)	1221
Bst2BI	CACGAG	1 cut(s)	723
Bst4CI	ACNGT	6 cut(s)	638, 1033, 1147, 1180, 1249, 1348
BstACI	GRCGYC	1 cut(s)	1316
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	1084, 1591
BstDEI	CTNAG	5 cut(s)	176, 798, 1152, 1254, 1449
BstDSI	CCRYGG	2 cut(s)	1032, 1221
BstENI	CCTNNNNNAGG	1 cut(s)	179
BstF5I	GGATG	4 cut(s)	751, 1189, 1411, 1639
BstMAI	GTCTC	3 cut(s)	1136, 1276, 1427
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 719, 758, 1313
BstNSI	RCATGY	1 cut(s)	59
BstSFI	CTRYAG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	63, 1025, 1403
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	4 cut(s)	394, 430, 1379, 1415
BstXI	CCANNNNNNTGG	1 cut(s)	1228
BstYI	RGATCY	4 cut(s)	394, 430, 1379, 1415
Bsu15I	ATCGAT	1 cut(s)	1424
BsuTUI	ATCGAT	1 cut(s)	1424
BtgI	CCRYGG	2 cut(s)	1032, 1221
BtgZI	GCGATG	1 cut(s)	992
BtrI	CACGTC	1 cut(s)	1207
BtsCI	GGATG	4 cut(s)	751, 1189, 1411, 1639
BtsI	GCAGTG	2 cut(s)	768, 1607
BtsIMutI	CAGTG	3 cut(s)	768, 789, 1607
Cac8I	GCNNGC	2 cut(s)	1084, 1591
CaiI	CAGNNNCTG	2 cut(s)	1145, 1253
CciI	TCATGA	2 cut(s)	715, 1537
ClaI	ATCGAT	1 cut(s)	1424
CseI	GACGC	1 cut(s)	1305
Csp6I	GTAC	5 cut(s)	897, 1041, 1074, 1470, 1518
CspCI	CAANNNNNGTGG	2 cut(s)	852, 887
CviQI	GTAC	5 cut(s)	897, 1041, 1074, 1470, 1518
DdeI	CTNAG	5 cut(s)	176, 798, 1152, 1254, 1449
DraI	TTTAAA	1 cut(s)	906
DrdI	GACNNNNNNGTC	1 cut(s)	1360
DseDI	GACNNNNNNGTC	1 cut(s)	1360
Ecl136II	GAGCTC	1 cut(s)	963
Eco130I	CCWWGG	1 cut(s)	1221
Eco24I	GRGCYC	1 cut(s)	965
Eco31I	GGTCTC	1 cut(s)	1427
Eco32I	GATATC	1 cut(s)	1102
Eco53kI	GAGCTC	1 cut(s)	963
Eco57I	CTGAAG	2 cut(s)	318, 455
EcoICRI	GAGCTC	1 cut(s)	963
EcoNI	CCTNNNNNAGG	1 cut(s)	179
EcoRI	GAATTC	1 cut(s)	670
EcoRV	GATATC	1 cut(s)	1102
EcoT14I	CCWWGG	1 cut(s)	1221
EcoT38I	GRGCYC	1 cut(s)	965
ErhI	CCWWGG	1 cut(s)	1221
FbaI	TGATCA	3 cut(s)	3, 1000, 1209
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	5 cut(s)	77, 1014, 1392, 1446, 1653
FokI	GGATG	4 cut(s)	758, 1196, 1418, 1646
FriOI	GRGCYC	1 cut(s)	965
Fsp4HI	GCNGC	5 cut(s)	77, 1014, 1392, 1446, 1653
FspBI	CTAG	2 cut(s)	756, 848
GluI	GCNGC	5 cut(s)	77, 1014, 1392, 1446, 1653
GsuI	CTGGAG	2 cut(s)	528, 1218
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	1305
Hin1I	GRCGYC	1 cut(s)	1316
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	9 cut(s)	61, 197, 635, 650, 994, 1048, 1081, 1505, 1561
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188III	TCNNGA	4 cut(s)	716, 1320, 1413, 1538
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	1321
HpyAV	CCTTC	6 cut(s)	224, 257, 263, 542, 625, 1490
HpyCH4III	ACNGT	6 cut(s)	638, 1033, 1147, 1180, 1249, 1348
HpyCH4IV	ACGT	1 cut(s)	1206
HpyCH4V	TGCA	5 cut(s)	64, 310, 761, 1307, 1652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 719, 758, 1313
HpyF3I	CTNAG	5 cut(s)	176, 798, 1152, 1254, 1449
HpySE526I	ACGT	1 cut(s)	1206
Hsp92I	GRCGYC	1 cut(s)	1316
Ksp22I	TGATCA	3 cut(s)	3, 1000, 1209
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	3 cut(s)	272, 503, 1388
Lsp1109I	GCAGC	3 cut(s)	63, 1025, 1403
LweI	GCATC	2 cut(s)	739, 1432
MaeI	CTAG	2 cut(s)	756, 848
MaeII	ACGT	1 cut(s)	1206
MaeIII	GTNAC	2 cut(s)	96, 763
MbiI	CCGCTC	1 cut(s)	1448
MfeI	CAATTG	1 cut(s)	1545
MflI	RGATCY	4 cut(s)	394, 430, 1379, 1415
MhlI	GDGCHC	1 cut(s)	965
MluCI	AATT	8 cut(s)	572, 670, 733, 859, 1057, 1276, 1296, 1545
MlyI	GAGTC	4 cut(s)	1163, 1469, 1499, 1525
MseI	TTAA	4 cut(s)	905, 971, 1136, 1293
MslI	CAYNNNNRTG	2 cut(s)	315, 1226
MspA1I	CMGCKG	1 cut(s)	1394
MspI	CCGG	1 cut(s)	168
MunI	CAATTG	1 cut(s)	1545
Mva1269I	GAATGC	3 cut(s)	115, 715, 1309
MwoI	GCNNNNNNNGC	4 cut(s)	61, 719, 758, 1313
NcoI	CCATGG	1 cut(s)	1221
NlaIV	GGNNCC	2 cut(s)	26, 396
NmeAIII	GCCGAG	1 cut(s)	982
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	1 cut(s)	59
PagI	TCATGA	2 cut(s)	715, 1537
PciSI	GCTCTTC	1 cut(s)	444
PctI	GAATGC	3 cut(s)	115, 715, 1309
PfeI	GAWTC	6 cut(s)	42, 1265, 1325, 1478, 1550, 1559
PflMI	CCANNNNNTGG	1 cut(s)	200
PkrI	GCNGC	5 cut(s)	78, 1015, 1393, 1447, 1654
PleI	GAGTC	4 cut(s)	1162, 1468, 1499, 1525
PpsI	GAGTC	4 cut(s)	1162, 1468, 1499, 1525
PsiI	TTATAA	1 cut(s)	785
Psp124BI	GAGCTC	1 cut(s)	965
PspN4I	GGNNCC	2 cut(s)	26, 396
PstI	CTGCAG	1 cut(s)	66
PstNI	CAGNNNCTG	2 cut(s)	1145, 1253
PsuI	RGATCY	4 cut(s)	394, 430, 1379, 1415
PvuII	CAGCTG	1 cut(s)	1394
RsaI	GTAC	5 cut(s)	898, 1042, 1075, 1471, 1519
RsaNI	GTAC	5 cut(s)	897, 1041, 1074, 1470, 1518
RseI	CAYNNNNRTG	2 cut(s)	315, 1226
SacI	GAGCTC	1 cut(s)	965
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	4 cut(s)	905, 971, 1136, 1293
SatI	GCNGC	5 cut(s)	77, 1014, 1392, 1446, 1653
SchI	GAGTC	4 cut(s)	1163, 1469, 1499, 1525
SduI	GDGCHC	1 cut(s)	965
SfaNI	GCATC	2 cut(s)	739, 1432
SfcI	CTRYAG	1 cut(s)	62
SmiMI	CAYNNNNRTG	2 cut(s)	315, 1226
Sse9I	AATT	8 cut(s)	572, 670, 733, 859, 1057, 1276, 1296, 1545
SsiI	CCGC	2 cut(s)	10, 1446
SspMI	CTAG	2 cut(s)	756, 848
SstI	GAGCTC	1 cut(s)	965
StyI	CCWWGG	1 cut(s)	1221
TaaI	ACNGT	6 cut(s)	638, 1033, 1147, 1180, 1249, 1348
TaiI	ACGT	1 cut(s)	1209
TaqI	TCGA	1 cut(s)	1424
TasI	AATT	8 cut(s)	572, 670, 733, 859, 1057, 1276, 1296, 1545
TatI	WGTACW	1 cut(s)	1073
TauI	GCSGC	1 cut(s)	1448
TfiI	GAWTC	6 cut(s)	42, 1265, 1325, 1478, 1550, 1559
Tru1I	TTAA	4 cut(s)	905, 971, 1136, 1293
Tru9I	TTAA	4 cut(s)	905, 971, 1136, 1293
TscAI	CASTG	3 cut(s)	768, 796, 1614
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	4 cut(s)	76, 1013, 1391, 1652
Tsp45I	GTSAC	1 cut(s)	763
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	3 cut(s)	768, 796, 1614
Van91I	CCANNNNNTGG	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	179
XapI	RAATTY	3 cut(s)	572, 670, 1276
XceI	RCATGY	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	339
XspI	CTAG	2 cut(s)	756, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.