RLG00000029328

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003510
Physical Location & Seq
Forward (+)
36605632 .. 36607221
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029328

Sequence Viewer

Length: 1590 bp
ATGTTGAAGAAGCCGCCAAGTAGGAATCACAGAACCAAACGAGTCAAGGTGAAGCATATTTTGCAGATTGCCCTGCTCCTTGGGGTTTGCTTTTGGTTGCTTTATCAGCTCAAGCATTCCCATGATAAGAAATTGGCGTTGGATGAGAAAGCTGCAAAAGCCTCAATCAGATCCCTGAGTGAAGGTGAGCTTCTGAAACTTGGGAGGAAAGACCTTCCTCACAAGGACATCAGTAAAAATGTGAAACAAGAGGAAGAGGAGGAAGAAGAAACTGCAGGAGACGAAGGAGAGAAGCATGAGGTCGAAGGGCGAGAAGAAGAAGATAAAAAACATGAAGTAGAAGAGCGAGAAGAAGAGGATCTGAAGCATGATGTAGAAGAGCAAGAGGAGGAGGAAAGCAAGAATGATGATACAGGAGATGAGGGAGGAGCTGGAGATGATGAGATAGATGAAAATGAGCAAGAGATAAAAGAAGGAAAAATTGACCATGAAGAAGACATTTTAGATGAAGAGAAAGAAAGAGAAGATGAGGGTGATGAGAAGGATGGTGACTGGAATGAAAGGGAAGAGAGAGAGGGTCGAGCAGAAAATGAGAACTCATCAGACGATCAAGACAACGACGGAGGTGATAAGAATGCTCATGAGGCACGAGAGGAACATTACAAGGGGGATGATGCTTCTAGTGCAGTGACCCATGATGCCCAAGTTATAAGCACTGAAACTGAGAAAGTAAGTTCGGAAAGTGGAAATGAGAACTCTGGAAGCAGCTCTCTGGAAAAGGAGATAAAATCTAATTATGCTGAGGATGTAAATGGAAACCAAAACAATTCAAGATTGTTGGATGGTAATACGGCCAAAAATGGCACTGTAAGTGTGGCTGCAAGTGAAGAGAAAGTTGATGAAAATTTGTCCAATCCTGTGGACAGCTCAGTTTTAAATGCAACTATGAAAGTACAGTCTGATGATATACCAGAAGCAGACAATAACTCAACAAATGTGAGTACAGAATCGAGCAACAACTCACTGGAAGTCAACCAGGCAAATGGAACAGAAACTGTATCTGTGTCAGCTCACTCTCAAAATGGTACATTGGATGGTATGACTACTAGAGAGGGAATTGCCGGAGAAACCTTGGTTGTGGAACAGACTAATAACACAATTTCTGATCATTATCACTCAGATTCTAATTCAACAGTTTCTAGTAATAAGGTAGAGAGTAATGTGTCCGAAAAGATCTTAAGATCTAATGGCACAGCTCAACTGGAGGATGATTCCAGGTCTTCAACAATAAATGAGTCTATGGATGCCACAAAAAATGAAGAATTGAAGAATGAAGATGCCAACAAGAATGAGGAATCAAAGATTGAAGAGGCCACCAAGAACAAAGAGTTGAATGGCACAAGTGAATCCGGCAAGACTGGCAACAGTTCAGACTCTAGAAATGGGACGGAGGATGCAGTTCAGCATGACCCCATCGATTCTTCTGATTCCCTTGTCTCCGAAGACAAGAAAGAGGCTCGCACAGATTTAGATACATCGCCAGAGATGAAAACAGAGGGCAACGAGAATGGACAGGCTGCAGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

530

Amino Acids

58.33

Weight (kDa)

4.41

Isoelectric Point (pI)

49.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AciI CCGC 1 cut(s) 14
AclWI GGATC 2 cut(s) 165, 366
AcoI YGGCCR 1 cut(s) 852
AcsI RAATTY 1 cut(s) 904
AcuI CTGAAG 1 cut(s) 383
AfaI GTAC 3 cut(s) 954, 1003, 1087
AflII CTTAAG 1 cut(s) 1237
AgsI TTSAA 7 cut(s) 7, 831, 1191, 1284, 1327, 1367, 1393
AjnI CCWGG 2 cut(s) 1035, 1274
AjuI GAANNNNNNNTTGG 2 cut(s) 122, 154
AluBI AGCT 8 cut(s) 109, 152, 190, 431, 768, 927, 1070, 1256
AluI AGCT 8 cut(s) 109, 152, 190, 431, 768, 927, 1070, 1256
Alw26I GTCTC 2 cut(s) 273, 1501
AlwI GGATC 2 cut(s) 165, 366
AlwNI CAGNNNCTG 1 cut(s) 1055
AoxI GGCC 2 cut(s) 852, 1371
ApeKI GCWGC 5 cut(s) 152, 765, 878, 1577, 1580
ApoI RAATTY 1 cut(s) 904
AsuHPI GGTGA 5 cut(s) 61, 197, 545, 560, 638
BauI CACGAG 1 cut(s) 648
BbsI GAAGAC 3 cut(s) 501, 1272, 1509
BbvCI CCTCAGC 1 cut(s) 801
BbvI GCAGC 4 cut(s) 139, 777, 865, 1564
BccI CCATC 4 cut(s) 539, 836, 1088, 1481
BceAI ACGGC 1 cut(s) 867
BciT130I CCWGG 2 cut(s) 1037, 1276
BclI TGATCA 1 cut(s) 1165
BcoDI GTCTC 2 cut(s) 273, 1501
BfaI CTAG 4 cut(s) 681, 1107, 1200, 1437
BfmI CTRYAG 2 cut(s) 273, 1578
BfrI CTTAAG 1 cut(s) 1237
BglII AGATCT 2 cut(s) 1233, 1241
BisI GCNGC 6 cut(s) 14, 153, 766, 879, 1578, 1581
BlsI GCNGC 6 cut(s) 15, 154, 767, 880, 1579, 1582
Bme1390I CCNGG 2 cut(s) 1037, 1276
BmrFI CCNGG 2 cut(s) 1037, 1276
BmsI GCATC 5 cut(s) 664, 688, 1294, 1327, 1444
BpiI GAAGAC 3 cut(s) 501, 1272, 1509
BpmI CTGGAG 2 cut(s) 453, 1283
Bpu10I CCTNAGC 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 1476
BsaBI GATNNNNATC 1 cut(s) 1170
BsaJI CCNNGG 2 cut(s) 79, 1131
Bse1I ACTGG 4 cut(s) 557, 1029, 1266, 1423
Bse8I GATNNNNATC 1 cut(s) 1170
BseBI CCWGG 2 cut(s) 1037, 1276
BseCI ATCGAT 1 cut(s) 1476
BseDI CCNNGG 2 cut(s) 79, 1131
BseGI GGATG 9 cut(s) 148, 550, 676, 811, 847, 1099, 1273, 1309, 1459
BseJI GATNNNNATC 1 cut(s) 1170
BseMII CTCAG 5 cut(s) 167, 714, 792, 942, 1191
BseNI ACTGG 4 cut(s) 557, 1029, 1266, 1423
BseRI GAGGAG 4 cut(s) 272, 401, 404, 441
BseXI GCAGC 4 cut(s) 139, 777, 865, 1564
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 2 cut(s) 854, 1373
BshVI ATCGAT 1 cut(s) 1476
BsiSI CCGG 2 cut(s) 1122, 1410
BslFI GGGAC 1 cut(s) 1459
BsmAI GTCTC 2 cut(s) 273, 1501
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 1459
BsmI GAATGC 2 cut(s) 115, 640
BsnI GGCC 2 cut(s) 854, 1373
Bsp143I GATC 6 cut(s) 170, 358, 607, 1165, 1233, 1241
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 854, 1373
BspCNI CTCAG 5 cut(s) 168, 715, 793, 941, 1190
BspDI ATCGAT 1 cut(s) 1476
BspHI TCATGA 1 cut(s) 640
BspMAI CTGCAG 2 cut(s) 277, 1582
BspPI GGATC 2 cut(s) 165, 366
BspQI GCTCTTC 2 cut(s) 336, 372
BspTI CTTAAG 1 cut(s) 1237
BsrI ACTGG 4 cut(s) 557, 1029, 1266, 1423
BssECI CCNNGG 2 cut(s) 79, 1131
BssMI GATC 6 cut(s) 170, 358, 607, 1165, 1233, 1241
BssSI CACGAG 1 cut(s) 648
BssT1I CCWWGG 2 cut(s) 79, 1131
Bst2BI CACGAG 1 cut(s) 648
Bst2UI CCWGG 2 cut(s) 1037, 1276
Bst4CI ACNGT 5 cut(s) 868, 957, 1057, 1195, 1427
Bst6I CTCTTC 8 cut(s) 249, 336, 348, 372, 504, 561, 882, 1362
BstAFI CTTAAG 1 cut(s) 1237
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 1519
BstDEI CTNAG 5 cut(s) 176, 723, 801, 928, 1177
BstF5I GGATG 9 cut(s) 148, 550, 676, 811, 847, 1099, 1273, 1309, 1459
BstKTI GATC 6 cut(s) 173, 361, 610, 1168, 1236, 1244
BstMAI GTCTC 2 cut(s) 273, 1501
BstMBI GATC 6 cut(s) 170, 358, 607, 1165, 1233, 1241
BstMWI GCNNNNNNNGC 6 cut(s) 61, 106, 158, 644, 683, 1419
BstNI CCWGG 2 cut(s) 1037, 1276
BstSCI CCNGG 2 cut(s) 1035, 1274
BstSFI CTRYAG 2 cut(s) 273, 1578
BstV1I GCAGC 4 cut(s) 139, 777, 865, 1564
BstV2I GAAGAC 3 cut(s) 501, 1272, 1509
BstX2I RGATCY 4 cut(s) 170, 358, 1233, 1241
BstXI CCANNNNNNTGG 2 cut(s) 919, 1043
BstYI RGATCY 4 cut(s) 170, 358, 1233, 1241
Bsu15I ATCGAT 1 cut(s) 1476
BsuRI GGCC 2 cut(s) 854, 1373
BsuTUI ATCGAT 1 cut(s) 1476
BtgZI GCGATG 1 cut(s) 1521
BtsCI GGATG 9 cut(s) 148, 550, 676, 811, 847, 1099, 1273, 1309, 1459
BtsI GCAGTG 1 cut(s) 693
BtsIMutI CAGTG 4 cut(s) 693, 714, 864, 1022
Cac8I GCNNGC 1 cut(s) 1519
CaiI CAGNNNCTG 1 cut(s) 1055
CciI TCATGA 1 cut(s) 640
ClaI ATCGAT 1 cut(s) 1476
Csp6I GTAC 3 cut(s) 953, 1002, 1086
CviAII CATG 8 cut(s) 122, 296, 332, 368, 488, 641, 695, 1466
CviQI GTAC 3 cut(s) 953, 1002, 1086
DdeI CTNAG 5 cut(s) 176, 723, 801, 928, 1177
DpnI GATC 6 cut(s) 172, 360, 609, 1167, 1235, 1243
DpnII GATC 6 cut(s) 170, 358, 607, 1165, 1233, 1241
DraI TTTAAA 1 cut(s) 936
EaeI YGGCCR 1 cut(s) 852
Eam1104I CTCTTC 8 cut(s) 249, 336, 348, 372, 504, 561, 882, 1362
EarI CTCTTC 8 cut(s) 249, 336, 348, 372, 504, 561, 882, 1362
Eco130I CCWWGG 2 cut(s) 79, 1131
Eco57I CTGAAG 1 cut(s) 383
EcoRII CCWGG 2 cut(s) 1035, 1274
EcoT14I CCWWGG 2 cut(s) 79, 1131
ErhI CCWWGG 2 cut(s) 79, 1131
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 8 cut(s) 125, 299, 335, 371, 491, 644, 698, 1469
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 1 cut(s) 1459
FatI CATG 8 cut(s) 121, 295, 331, 367, 487, 640, 694, 1465
FbaI TGATCA 1 cut(s) 1165
Fnu4HI GCNGC 6 cut(s) 14, 153, 766, 879, 1578, 1581
FokI GGATG 9 cut(s) 155, 557, 683, 818, 854, 1106, 1280, 1316, 1466
Fsp4HI GCNGC 6 cut(s) 14, 153, 766, 879, 1578, 1581
FspBI CTAG 4 cut(s) 681, 1107, 1200, 1437
GluI GCNGC 6 cut(s) 14, 153, 766, 879, 1578, 1581
GsuI CTGGAG 2 cut(s) 453, 1283
HaeIII GGCC 2 cut(s) 854, 1373
HapII CCGG 2 cut(s) 1122, 1410
Hin1II CATG 8 cut(s) 125, 299, 335, 371, 491, 644, 698, 1469
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HpaII CCGG 2 cut(s) 1122, 1410
HphI GGTGA 5 cut(s) 61, 197, 545, 560, 638
Hpy166II GTNNAC 2 cut(s) 922, 1033
Hpy188III TCNNGA 6 cut(s) 611, 641, 759, 773, 831, 1437
Hpy8I GTNNAC 2 cut(s) 922, 1033
Hpy99I CGWCG 1 cut(s) 623
HpyAV CCTTC 6 cut(s) 176, 224, 278, 299, 467, 535
HpyCH4III ACNGT 5 cut(s) 868, 957, 1057, 1195, 1427
HpyCH4V TGCA 8 cut(s) 64, 155, 275, 686, 881, 941, 1457, 1580
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 106, 158, 644, 683, 1419
HpyF3I CTNAG 5 cut(s) 176, 723, 801, 928, 1177
Hsp92II CATG 8 cut(s) 125, 299, 335, 371, 491, 644, 698, 1469
Ksp22I TGATCA 1 cut(s) 1165
Kzo9I GATC 6 cut(s) 170, 358, 607, 1165, 1233, 1241
LguI GCTCTTC 2 cut(s) 336, 372
LmnI GCTCC 2 cut(s) 81, 428
Lsp1109I GCAGC 4 cut(s) 139, 777, 865, 1564
LweI GCATC 5 cut(s) 664, 688, 1294, 1327, 1444
MaeI CTAG 4 cut(s) 681, 1107, 1200, 1437
MaeIII GTNAC 2 cut(s) 548, 688
MalI GATC 6 cut(s) 172, 360, 609, 1167, 1235, 1243
MboI GATC 6 cut(s) 170, 358, 607, 1165, 1233, 1241
MflI RGATCY 4 cut(s) 170, 358, 1233, 1241
MluCI AATT 9 cut(s) 131, 480, 793, 826, 904, 1116, 1158, 1186, 1322
MlyI GAGTC 3 cut(s) 51, 1304, 1427
MmeI TCCRAC 2 cut(s) 120, 819
MseI TTAA 2 cut(s) 935, 1238
MslI CAYNNNNRTG 1 cut(s) 120
MspCI CTTAAG 1 cut(s) 1237
MspI CCGG 2 cut(s) 1122, 1410
MspR9I CCNGG 2 cut(s) 1037, 1276
Mva1269I GAATGC 2 cut(s) 115, 640
MvaI CCWGG 2 cut(s) 1037, 1276
MwoI GCNNNNNNNGC 6 cut(s) 61, 106, 158, 644, 683, 1419
NdeII GATC 6 cut(s) 170, 358, 607, 1165, 1233, 1241
NlaIII CATG 8 cut(s) 125, 299, 335, 371, 491, 644, 698, 1469
NmuCI GTSAC 2 cut(s) 548, 688
PagI TCATGA 1 cut(s) 640
PciSI GCTCTTC 2 cut(s) 336, 372
PctI GAATGC 2 cut(s) 115, 640
PfeI GAWTC 8 cut(s) 25, 1007, 1181, 1271, 1355, 1406, 1478, 1487
PkrI GCNGC 6 cut(s) 15, 154, 767, 880, 1579, 1582
PleI GAGTC 3 cut(s) 50, 1303, 1427
PpsI GAGTC 3 cut(s) 50, 1303, 1427
PsiI TTATAA 1 cut(s) 710
Psp6I CCWGG 2 cut(s) 1035, 1274
PspGI CCWGG 2 cut(s) 1035, 1274
PstI CTGCAG 2 cut(s) 277, 1582
PstNI CAGNNNCTG 1 cut(s) 1055
PsuI RGATCY 4 cut(s) 170, 358, 1233, 1241
RsaI GTAC 3 cut(s) 954, 1003, 1087
RsaNI GTAC 3 cut(s) 953, 1002, 1086
RseI CAYNNNNRTG 1 cut(s) 120
SapI GCTCTTC 2 cut(s) 336, 372
SaqAI TTAA 2 cut(s) 935, 1238
SatI GCNGC 6 cut(s) 14, 153, 766, 879, 1578, 1581
Sau3AI GATC 6 cut(s) 170, 358, 607, 1165, 1233, 1241
SchI GAGTC 3 cut(s) 51, 1304, 1427
ScrFI CCNGG 2 cut(s) 1037, 1276
SfaNI GCATC 5 cut(s) 664, 688, 1294, 1327, 1444
SfcI CTRYAG 2 cut(s) 273, 1578
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 110, 1237
SmoI CTYRAG 2 cut(s) 110, 1237
Sse9I AATT 9 cut(s) 131, 480, 793, 826, 904, 1116, 1158, 1186, 1322
SsiI CCGC 1 cut(s) 14
SspMI CTAG 4 cut(s) 681, 1107, 1200, 1437
StyD4I CCNGG 2 cut(s) 1035, 1274
StyI CCWWGG 2 cut(s) 79, 1131
TaaI ACNGT 5 cut(s) 868, 957, 1057, 1195, 1427
TaqI TCGA 4 cut(s) 303, 580, 1010, 1476
TasI AATT 9 cut(s) 131, 480, 793, 826, 904, 1116, 1158, 1186, 1322
TatI WGTACW 2 cut(s) 952, 1001
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 8 cut(s) 25, 1007, 1181, 1271, 1355, 1406, 1478, 1487
Tru1I TTAA 2 cut(s) 935, 1238
Tru9I TTAA 2 cut(s) 935, 1238
TscAI CASTG 4 cut(s) 693, 721, 871, 1029
TseFI GTSAC 2 cut(s) 548, 688
TseI GCWGC 5 cut(s) 152, 765, 878, 1577, 1580
Tsp45I GTSAC 2 cut(s) 548, 688
TspGWI ACGGA 2 cut(s) 636, 1463
TspRI CASTG 4 cut(s) 693, 721, 871, 1029
Vha464I CTTAAG 1 cut(s) 1237
XapI RAATTY 1 cut(s) 904
XbaI TCTAGA 1 cut(s) 1436
XspI CTAG 4 cut(s) 681, 1107, 1200, 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.