Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003510

Physical Location & Seq

Genomic Coordinates Forward (+)

6184869 .. 6186477

Gene Structure 1609 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTTGAAGAAGCCGCCAAGTAGGAACCAGAGAACCAAAGGAATCAGGGTGAAGCATATATTGCAGATTGCATTGCTGCTTGGGGTATGCTTTTGGTTGATTTATCAGCTCAAGCATTCCTATGATAAGAAGGCAGCACTGGCTGAGAATGATCGAAAAACCTCGATCAGAACCCAAACGGAAAGTGAGCTTCTGAAACTTGGGAGGAAAGACCTTCCAAACTTGGATGTGACAGCACATGTGAAACAAGATGAAGATGAGGAGGAAGAAGCTCTAAGAGAGGAAGAAGAGAAACATGAGGATCCGAAGCATGAGGTAGAAGAGATCGAAGAAGAGGGTCAGAAGCATGAGGGAGAAGAGCAAGAGGAGGAGGAAAACAAGAATGAAGATCCCGAAGATGAAGGAAAAGGAGCAGGAGATGAAGAGATAGATGAAAATGATTTGGAGACAAAAGAAGGGGGAGATTATCGTAATGAGAACCTTGTAGATGAAGAGAAAGAAAGAGAAGATGGGGGTGATGAGAAGGATGGTGACAGGAATGAGGATGAAGAAAGAGAAGACCGAGAAGAAAATGAGAATTCATCGGATGATCAAGATAATGAAGGAGGTGATACGAATGCTCATGAGGCACGAGAGGAACATTATAAGGGGGATGATGCTTCTAGTGCAGTGACCCATGATACCCAAGTTATAAGCACTGAAACTGATAAAGAAAGTTCAAATGAAACCTCTGAAACCAGTGAAGATGAAGATGGAAACCAACACAATATGAGATTGGTGCATGGTGCAACATCTGAAAATGGCACTTCAAGTGTACCTGCAAGTGAAGAGAAACTTGAAGGGAATTCGTCCAATCCTGTTGCAAACTCACTTTTAGATGCAAATGTGAAAATACAATCTAGTGAACCGCCAGAAGCAGAAAATAACTCAACAATTGTGAGTTCAGAAGTAAGCAACAACTTAGCTGAAGTCAACCAGGAAACTAGTCCGCAGAATACAACTGAAACTATATCTGAGTCAGCTCAGTCTCAGAATGCAGCAGTGGATGGTATGGTTACTAGAGAGGGCAGCACAGGACAAACTGTGGTCGTGGAACAGACTAATAACACAATATCTGTGAATGATCAATTGGATTCTAATGCAACAGTTTCTAGTCGTGAGGTAGAGACTAATGTGTCAGAAAATACCTTAATATCTGATGGTACAGCTACAGTGGAGGATAGCTCCAGATCTTCAACAATAAAGGAGACTACCAGATCTTCAACAATAAAGGAGACTACGGATGCCACTGATAATGAAGAGTCGGCGAATGACGATGCCACTATGAATGATGATGAAGATGGTAGGGAAGGTGAAGGTTCAGACTCCACAAATAGGACGGAGGATACAGTTGAGGATGACCCCATTGATTCTTCTGATTCGCATATTTCCGAAGATGAGAAAGAGGCTCGGACAGATTTAGATACATTGCCAGAAATACAAACAGAGGGAGATGAGAATGGAGAGGCTGCAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

506

Amino Acids

55.88

Weight (kDa)

4.14

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33740 AT4G33740 AT4G33740 AT4G33740 AT4G33740
fragaria_vesca	FvH4_2g02971 FvH4_2g02971
malus_domestica	MD05G1108600.v1.1 MD10G1112600.v1.1
prunus_persica	Prupe.8G152300_v2.0.a1
pyrus_communis	pycom05g10460 pycom10g09740
rosa_chinensis	RchiOBHm_Chr1g0336871 RchiOBHm_Chr6g0247781
rosa_laevigata	RLG00000015180 RLG00000029328
rosa_multiflora	Rmu_sc0001983.1_g000010 Rmu_sc0004920.1_g000004 Rmu_sc0009569.1_g000009 Rmu_sc0018000.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433250 Rroxscaffold_4G00315280 Rroxscaffold_7G00213660
rosa_rugosa	Rorug01G0128600 Rorug05G0528500
rosa_samantha	Rh1AG149300 Rh1BG117700 Rh1CG140500 Rh1DG156600 Rh6AG043600 Rh6BG038300 Rh6CG037100 Rh6DG034200
rosa_wichuraiana	Rw1G012080 Rw6G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	645, 692
AasI	GACNNNNNNGTC	1 cut(s)	1174
Acc36I	ACCTGC	1 cut(s)	826
AciI	CCGC	3 cut(s)	14, 908, 989
AclWI	GGATC	3 cut(s)	296, 309, 383
AcsI	RAATTY	2 cut(s)	577, 844
AcuI	CTGAAG	1 cut(s)	987
AfaI	GTAC	2 cut(s)	816, 1204
AfiI	CCNNNNNNNGG	1 cut(s)	1374
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	6 cut(s)	7, 720, 810, 839, 1236, 1263
AhlI	ACTAGT	1 cut(s)	983
AjnI	CCWGG	1 cut(s)	975
AjuI	GAANNNNNNNTTGG	2 cut(s)	1112, 1144
AluBI	AGCT	7 cut(s)	109, 190, 272, 965, 1022, 1208, 1224
AluI	AGCT	7 cut(s)	109, 190, 272, 965, 1022, 1208, 1224
Alw26I	GTCTC	5 cut(s)	440, 1032, 1160, 1241, 1268
AlwI	GGATC	3 cut(s)	296, 309, 383
ApeKI	GCWGC	6 cut(s)	76, 134, 1037, 1068, 1508, 1511
ApoI	RAATTY	2 cut(s)	577, 844
AsuHPI	GGTGA	5 cut(s)	61, 527, 542, 620, 1364
BaeI	ACNNNNGTAYC	2 cut(s)	672, 705
BamHI	GGATCC	1 cut(s)	301
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	5 cut(s)	63, 146, 1049, 1080, 1495
BccI	CCATC	6 cut(s)	503, 521, 746, 1040, 1193, 1334
BciT130I	CCWGG	1 cut(s)	977
BciVI	GTATCC	1 cut(s)	1378
BclI	TGATCA	2 cut(s)	589, 1123
BcoDI	GTCTC	5 cut(s)	440, 1032, 1160, 1241, 1268
BcuI	ACTAGT	1 cut(s)	983
BfaI	CTAG	5 cut(s)	663, 900, 984, 1059, 1152
BfmI	CTRYAG	2 cut(s)	1209, 1509
BfuAI	ACCTGC	1 cut(s)	826
BfuI	GTATCC	1 cut(s)	1378
BglII	AGATCT	2 cut(s)	1229, 1256
BisI	GCNGC	7 cut(s)	14, 77, 135, 1038, 1069, 1509, 1512
BlsI	GCNGC	7 cut(s)	15, 78, 136, 1039, 1070, 1510, 1513
Bme1390I	CCNGG	1 cut(s)	977
BmiI	GGNNCC	2 cut(s)	26, 303
BmrFI	CCNGG	1 cut(s)	977
BmsI	GCATC	4 cut(s)	646, 868, 1273, 1306
BpiI	GAAGAC	1 cut(s)	564
BplI	GAGNNNNNCTC	2 cut(s)	1208, 1240
BpmI	CTGGAG	1 cut(s)	1210
BpuEI	CTTGAG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	1374
Bse1I	ACTGG	2 cut(s)	144, 738
Bse3DI	GCAATG	2 cut(s)	71, 1466
BseBI	CCWGG	1 cut(s)	977
BseGI	GGATG	8 cut(s)	232, 532, 550, 592, 658, 1051, 1288, 1402
BseLI	CCNNNNNNNGG	1 cut(s)	1374
BseMI	GCAATG	2 cut(s)	71, 1466
BseMII	CTCAG	4 cut(s)	135, 1005, 1037, 1043
BseNI	ACTGG	2 cut(s)	144, 738
BseRI	GAGGAG	3 cut(s)	275, 380, 383
BseXI	GCAGC	5 cut(s)	63, 146, 1049, 1080, 1495
BsgI	GTGCAG	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	1374
BsmAI	GTCTC	5 cut(s)	440, 1032, 1160, 1241, 1268
BsmI	GAATGC	3 cut(s)	115, 622, 1039
Bsp143I	GATC	9 cut(s)	151, 165, 301, 324, 388, 589, 1123, 1229, 1256
BspACI	CCGC	3 cut(s)	14, 908, 989
BspCNI	CTCAG	4 cut(s)	136, 1006, 1036, 1042
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	2 cut(s)	26, 303
BspMAI	CTGCAG	1 cut(s)	1513
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	296, 309, 383
BspQI	GCTCTTC	1 cut(s)	351
BsrDI	GCAATG	2 cut(s)	71, 1466
BsrI	ACTGG	2 cut(s)	144, 738
BssMI	GATC	9 cut(s)	151, 165, 301, 324, 388, 589, 1123, 1229, 1256
BssSI	CACGAG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	977
Bst4CI	ACNGT	4 cut(s)	1084, 1147, 1213, 1390
Bst6I	CTCTTC	8 cut(s)	282, 315, 327, 351, 417, 486, 822, 1293
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstDEI	CTNAG	6 cut(s)	144, 275, 961, 1014, 1023, 1029
BstF5I	GGATG	8 cut(s)	232, 532, 550, 592, 658, 1051, 1288, 1402
BstKTI	GATC	9 cut(s)	154, 168, 304, 327, 391, 592, 1126, 1232, 1259
BstMAI	GTCTC	5 cut(s)	440, 1032, 1160, 1241, 1268
BstMBI	GATC	9 cut(s)	151, 165, 301, 324, 388, 589, 1123, 1229, 1256
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 140, 626, 665
BstNI	CCWGG	1 cut(s)	977
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	1 cut(s)	975
BstSFI	CTRYAG	2 cut(s)	1209, 1509
BstV1I	GCAGC	5 cut(s)	63, 146, 1049, 1080, 1495
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	4 cut(s)	301, 388, 1229, 1256
BstYI	RGATCY	4 cut(s)	301, 388, 1229, 1256
BsuI	GTATCC	1 cut(s)	1378
BtsCI	GGATG	8 cut(s)	232, 532, 550, 592, 658, 1051, 1288, 1402
BtsI	GCAGTG	2 cut(s)	675, 1047
BtsIMutI	CAGTG	7 cut(s)	137, 675, 696, 745, 1047, 1218, 1287
BveI	ACCTGC	1 cut(s)	826
CciI	TCATGA	1 cut(s)	622
Csp6I	GTAC	2 cut(s)	815, 1203
CviAII	CATG	7 cut(s)	239, 296, 311, 347, 623, 677, 782
CviQI	GTAC	2 cut(s)	815, 1203
DdeI	CTNAG	6 cut(s)	144, 275, 961, 1014, 1023, 1029
DpnI	GATC	9 cut(s)	153, 167, 303, 326, 390, 591, 1125, 1231, 1258
DpnII	GATC	9 cut(s)	151, 165, 301, 324, 388, 589, 1123, 1229, 1256
DrdI	GACNNNNNNGTC	1 cut(s)	1174
DseDI	GACNNNNNNGTC	1 cut(s)	1174
Eam1104I	CTCTTC	8 cut(s)	282, 315, 327, 351, 417, 486, 822, 1293
EarI	CTCTTC	8 cut(s)	282, 315, 327, 351, 417, 486, 822, 1293
Eco57I	CTGAAG	1 cut(s)	987
EcoRI	GAATTC	2 cut(s)	577, 844
EcoRII	CCWGG	1 cut(s)	975
FaeI	CATG	7 cut(s)	242, 299, 314, 350, 626, 680, 785
FalI	AAGNNNNNCTT	2 cut(s)	819, 851
FatI	CATG	7 cut(s)	238, 295, 310, 346, 622, 676, 781
FbaI	TGATCA	2 cut(s)	589, 1123
Fnu4HI	GCNGC	7 cut(s)	14, 77, 135, 1038, 1069, 1509, 1512
FokI	GGATG	8 cut(s)	239, 539, 557, 599, 665, 1058, 1295, 1409
Fsp4HI	GCNGC	7 cut(s)	14, 77, 135, 1038, 1069, 1509, 1512
FspBI	CTAG	5 cut(s)	663, 900, 984, 1059, 1152
GluI	GCNGC	7 cut(s)	14, 77, 135, 1038, 1069, 1509, 1512
GsuI	CTGGAG	1 cut(s)	1210
Hin1II	CATG	7 cut(s)	242, 299, 314, 350, 626, 680, 785
HincII	GTYRAC	1 cut(s)	973
HindII	GTYRAC	1 cut(s)	973
HinfI	GANTC	7 cut(s)	42, 1016, 1133, 1301, 1364, 1409, 1418
HphI	GGTGA	5 cut(s)	61, 527, 542, 620, 1364
Hpy166II	GTNNAC	3 cut(s)	815, 905, 973
Hpy188III	TCNNGA	5 cut(s)	392, 593, 623, 1157, 1227
Hpy8I	GTNNAC	3 cut(s)	815, 905, 973
HpyAV	CCTTC	9 cut(s)	124, 224, 395, 449, 517, 596, 833, 1343, 1349
HpyCH4III	ACNGT	4 cut(s)	1084, 1147, 1213, 1390
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 140, 626, 665
HpyF3I	CTNAG	6 cut(s)	144, 275, 961, 1014, 1023, 1029
Hsp92II	CATG	7 cut(s)	242, 299, 314, 350, 626, 680, 785
Ksp22I	TGATCA	2 cut(s)	589, 1123
Kzo9I	GATC	9 cut(s)	151, 165, 301, 324, 388, 589, 1123, 1229, 1256
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	410, 1229
Lsp1109I	GCAGC	5 cut(s)	63, 146, 1049, 1080, 1495
LweI	GCATC	4 cut(s)	646, 868, 1273, 1306
MaeI	CTAG	5 cut(s)	663, 900, 984, 1059, 1152
MaeIII	GTNAC	4 cut(s)	229, 530, 670, 1054
MalI	GATC	9 cut(s)	153, 167, 303, 326, 390, 591, 1125, 1231, 1258
MboI	GATC	9 cut(s)	151, 165, 301, 324, 388, 589, 1123, 1229, 1256
MfeI	CAATTG	2 cut(s)	933, 1127
MflI	RGATCY	4 cut(s)	301, 388, 1229, 1256
MluCI	AATT	4 cut(s)	577, 844, 933, 1127
MlyI	GAGTC	3 cut(s)	1025, 1310, 1358
MseI	TTAA	1 cut(s)	1190
MslI	CAYNNNNRTG	1 cut(s)	120
MspR9I	CCNGG	1 cut(s)	977
MunI	CAATTG	2 cut(s)	933, 1127
Mva1269I	GAATGC	3 cut(s)	115, 622, 1039
MvaI	CCWGG	1 cut(s)	977
MwoI	GCNNNNNNNGC	4 cut(s)	61, 140, 626, 665
NdeII	GATC	9 cut(s)	151, 165, 301, 324, 388, 589, 1123, 1229, 1256
NlaIII	CATG	7 cut(s)	242, 299, 314, 350, 626, 680, 785
NlaIV	GGNNCC	2 cut(s)	26, 303
NmuCI	GTSAC	3 cut(s)	229, 530, 670
NspI	RCATGY	1 cut(s)	242
PagI	TCATGA	1 cut(s)	622
PciI	ACATGT	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	351
PctI	GAATGC	3 cut(s)	115, 622, 1039
PfeI	GAWTC	4 cut(s)	42, 1133, 1409, 1418
PkrI	GCNGC	7 cut(s)	15, 78, 136, 1039, 1070, 1510, 1513
PleI	GAGTC	3 cut(s)	1024, 1309, 1358
PpsI	GAGTC	3 cut(s)	1024, 1309, 1358
PscI	ACATGT	1 cut(s)	238
PsiI	TTATAA	2 cut(s)	645, 692
Psp6I	CCWGG	1 cut(s)	975
PspGI	CCWGG	1 cut(s)	975
PspN4I	GGNNCC	2 cut(s)	26, 303
PstI	CTGCAG	1 cut(s)	1513
PsuI	RGATCY	4 cut(s)	301, 388, 1229, 1256
RsaI	GTAC	2 cut(s)	816, 1204
RsaNI	GTAC	2 cut(s)	815, 1203
RseI	CAYNNNNRTG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	1190
SatI	GCNGC	7 cut(s)	14, 77, 135, 1038, 1069, 1509, 1512
Sau3AI	GATC	9 cut(s)	151, 165, 301, 324, 388, 589, 1123, 1229, 1256
SchI	GAGTC	3 cut(s)	1025, 1310, 1358
ScrFI	CCNGG	1 cut(s)	977
SfaNI	GCATC	4 cut(s)	646, 868, 1273, 1306
SfcI	CTRYAG	2 cut(s)	1209, 1509
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	983
Sse9I	AATT	4 cut(s)	577, 844, 933, 1127
SsiI	CCGC	3 cut(s)	14, 908, 989
SspMI	CTAG	5 cut(s)	663, 900, 984, 1059, 1152
StyD4I	CCNGG	1 cut(s)	975
TaaI	ACNGT	4 cut(s)	1084, 1147, 1213, 1390
TaqI	TCGA	3 cut(s)	154, 164, 327
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	4 cut(s)	577, 844, 933, 1127
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	4 cut(s)	42, 1133, 1409, 1418
Tru1I	TTAA	1 cut(s)	1190
Tru9I	TTAA	1 cut(s)	1190
TscAI	CASTG	7 cut(s)	144, 675, 703, 745, 1047, 1218, 1294
TseFI	GTSAC	3 cut(s)	229, 530, 670
TseI	GCWGC	6 cut(s)	76, 134, 1037, 1068, 1508, 1511
Tsp45I	GTSAC	3 cut(s)	229, 530, 670
TspGWI	ACGGA	3 cut(s)	194, 1295, 1394
TspRI	CASTG	7 cut(s)	144, 675, 703, 745, 1047, 1218, 1294
XapI	RAATTY	2 cut(s)	577, 844
XceI	RCATGY	1 cut(s)	242
XspI	CTAG	5 cut(s)	663, 900, 984, 1059, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.