MD05G1108600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
22284289 .. 22287377
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1108600.v1.1.491

Sequence Viewer

Length: 1656 bp
ATGATCAAGCGGACACCGAGTAGGAACCAAAGAACCAAAGGAATCAGGGTGAAGCATGTTCTGCAGATTTGTCTGCTGCTCGGGGTCTGCTTTTGGTTACTCTATCAGGTCAAGCATTCCCATGATAAGAAAGTGGCATTAGATACGAAAGATGAAAAAATCTCAACCGGAAGCCTGAATGAGGGTGAGCTTCCAAAACTTGGGAGGAAAGACCTTCCAAAACTTGAAATCCCTAAAAATGAGAAACAAGAGGAAGAGGAGGAAGACGAAGGAGCAGGACAGGAAGACGAGAAACCTGAAGTAGATGTGCATGAAGAAGAGGATCAGAAACATGAAGTAGACGCGCATGAAGAAGAGAATCAGAAGCATGAAGTAGGAGAGGGAGACGAAGAGGATCCAAAGCATGAAATCGGAAAGCGAGAAGAAGAGGATCTGAAGCATGAGGCAGAAGAGCAAGAGGAGGAAGAAAACAAGAACGAAGAGACAGAAGATGACAGAAGAGGAGCTGGAGATGATGAGATAGATGAAAATGAGCAAGAGGGGAAAGAAGGGGAAGCGGAACATGATGAGGAATTTATAGATGAGGAAAAAGAAAGAGAAGATGATGGGAATGAGAAGGATGGTGATAAGGACGGTGAAGAGAGAGAGAAACAAGAAGAACATGAGAATTCATCAGATGACCAAGATAATGATACCCATGATAAGAATGCTCATGAAGCACGAGAGGAGAATTACAAGGGGGATGATGCTTCTAGTGCAGTGGCCCATGATAATCAAGTTATAAGCACTGAAACTGAGAAAGTAAGTTCGGAAAACTCAAATGAGAATCCCGAAACTACTACACTAGAAAAGGACAATTCAACAATGGTGGAAGAGAGAATGGCTGGAAATGGTACTATTTTAAATGTAGCTACAAGTGAAGAGAGAGTTGATGGTAATATGTCCAATCCTGCGGAGAGCTCACTCTTAAATGCGATGGTGAAAACACAATCTAATGATCAACCAGAAGCAGGGAATAACTCAACCGTGGTGAGTACCGAAGCTAAAGATAATTTGACAATGGTGAGTACAGAAGCAGGCAATAAGTCAACAGATACCAACCAGGCAACTGGTTCATACCAGCAGAACTTGACAGAGACTGTATCTGAGTCAGCGCACTCTGAAAATGGAACGGTGGATGGTAGGACTACTGGAGAGGACGTGATCACACAAACCATGGTTGTGGAACAGGCTAACAACACAGCTGCTGAGAACAATGAATCTGTCTCAAATTCAACAGTATCCATTAAAATTGAGAATCCAGATGGGGCATCGGGAGAATCATCTAACTCCTCTAATACAGTAGCGACTAATGTGTCAGAGAATATCTTAAGATCTGACGGAGCAGCTGAAACAGAGGATGGTTCTGGATCTTCATCGATAAAGGAGACCACAGATGCCGCTCAGAATGAAGAGTCTAATGGTACAAGTGAATCGGACAGGACAGGTGAAGGTTCAGACTCCACAAATGGGACAGAGGACGCGACTCATCATGATCCAAATGATTCTTTTGATTCCCATATCACCCAAGACGAGAAAGAGGCTCGCACTGATCTAACTACACTGCCGGAGATAACAACCGAGGGGGATGAGAATGGAGAGGTTGCAGCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

552

Amino Acids

60.62

Weight (kDa)

4.24

Isoelectric Point (pI)

45.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 782
AasI GACNNNNNNGTC 1 cut(s) 1354
AccB7I CCANNNNNTGG 1 cut(s) 200
AccBSI CCGCTC 1 cut(s) 1442
AccI GTMKAC 1 cut(s) 339
AccII CGCG 2 cut(s) 344, 1523
AciI CCGC 4 cut(s) 10, 557, 953, 1440
AclWI GGATC 6 cut(s) 330, 389, 402, 438, 1417, 1529
AcsI RAATTY 3 cut(s) 572, 667, 1270
AcuI CTGAAG 2 cut(s) 318, 455
AfaI GTAC 4 cut(s) 895, 1036, 1069, 1465
AfiI CCNNNNNNNGG 4 cut(s) 181, 200, 1010, 1509
AflII CTTAAG 1 cut(s) 1369
AgsI TTSAA 3 cut(s) 227, 861, 1275
AjiI CACGTC 1 cut(s) 1201
AjnI CCWGG 1 cut(s) 1101
AluBI AGCT 7 cut(s) 190, 506, 911, 960, 1043, 1244, 1388
AluI AGCT 7 cut(s) 190, 506, 911, 960, 1043, 1244, 1388
Alw21I GWGCWC 1 cut(s) 962
Alw26I GTCTC 5 cut(s) 378, 476, 1130, 1270, 1421
AlwI GGATC 6 cut(s) 330, 389, 402, 438, 1417, 1529
AlwNI CAGNNNCTG 2 cut(s) 1139, 1247
Ama87I CYCGRG 1 cut(s) 80
AoxI GGCC 1 cut(s) 762
ApeKI GCWGC 4 cut(s) 76, 1244, 1385, 1646
ApoI RAATTY 3 cut(s) 572, 667, 1270
AspLEI GCGC 2 cut(s) 346, 1156
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 9 cut(s) 61, 197, 635, 647, 991, 1042, 1075, 1499, 1555
AvaI CYCGRG 1 cut(s) 80
BamHI GGATCC 1 cut(s) 394
BanII GRGCYC 1 cut(s) 962
BauI CACGAG 1 cut(s) 720
BbsI GAAGAC 2 cut(s) 270, 291
Bbv12I GWGCWC 1 cut(s) 962
BbvI GCAGC 3 cut(s) 63, 1231, 1397
BccI CCATC 7 cut(s) 599, 614, 926, 970, 1172, 1298, 1394
BciT130I CCWGG 1 cut(s) 1103
BciVI GTATCC 1 cut(s) 1291
BclI TGATCA 3 cut(s) 3, 997, 1203
BcoDI GTCTC 5 cut(s) 378, 476, 1130, 1270, 1421
BfaI CTAG 2 cut(s) 753, 845
BfmI CTRYAG 1 cut(s) 62
BfrI CTTAAG 1 cut(s) 1369
BfuI GTATCC 1 cut(s) 1291
BglII AGATCT 1 cut(s) 1373
BisI GCNGC 5 cut(s) 77, 1245, 1386, 1440, 1647
BlsI GCNGC 5 cut(s) 78, 1246, 1387, 1441, 1648
Bme1390I CCNGG 1 cut(s) 1103
BmeT110I CYCGRG 1 cut(s) 80
BmgBI CACGTC 1 cut(s) 1201
BmgT120I GGNCC 1 cut(s) 763
BmiI GGNNCC 2 cut(s) 26, 396
BmrFI CCNGG 1 cut(s) 1103
BmsI GCATC 3 cut(s) 736, 1319, 1426
BpiI GAAGAC 2 cut(s) 270, 291
BpmI CTGGAG 2 cut(s) 528, 1212
Bsa29I ATCGAT 1 cut(s) 1418
BsaBI GATNNNNATC 1 cut(s) 1414
BsaI GGTCTC 1 cut(s) 1421
BsaJI CCNNGG 3 cut(s) 1026, 1215, 1620
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 1185, 1215
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 200, 1010, 1509
Bse1I ACTGG 2 cut(s) 1114, 1195
Bse8I GATNNNNATC 1 cut(s) 1414
BseBI CCWGG 1 cut(s) 1103
BseCI ATCGAT 1 cut(s) 1418
BseDI CCNNGG 3 cut(s) 1026, 1215, 1620
BseGI GGATG 5 cut(s) 625, 748, 1183, 1405, 1633
BseJI GATNNNNATC 1 cut(s) 1414
BseLI CCNNNNNNNGG 4 cut(s) 181, 200, 1010, 1509
BseMII CTCAG 4 cut(s) 786, 1137, 1239, 1457
BseNI ACTGG 2 cut(s) 1114, 1195
BseRI GAGGAG 5 cut(s) 272, 473, 516, 740, 1321
BseXI GCAGC 3 cut(s) 63, 1231, 1397
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 2 cut(s) 344, 1523
BshFI GGCC 1 cut(s) 764
BshVI ATCGAT 1 cut(s) 1418
BsiHKAI GWGCWC 1 cut(s) 962
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 168, 1607
BslFI GGGAC 1 cut(s) 1525
BslI CCNNNNNNNGG 4 cut(s) 181, 200, 1010, 1509
BsmAI GTCTC 5 cut(s) 378, 476, 1130, 1270, 1421
BsmBI CGTCTC 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 1525
BsmI GAATGC 2 cut(s) 115, 712
BsnI GGCC 1 cut(s) 764
Bso31I GGTCTC 1 cut(s) 1421
BsoBI CYCGRG 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 962
Bsp19I CCATGG 1 cut(s) 1215
BspACI CCGC 4 cut(s) 10, 557, 953, 1440
BspANI GGCC 1 cut(s) 764
BspCNI CTCAG 4 cut(s) 787, 1138, 1240, 1456
BspDI ATCGAT 1 cut(s) 1418
BspFNI CGCG 2 cut(s) 344, 1523
BspHI TCATGA 2 cut(s) 712, 1531
BspLI GGNNCC 2 cut(s) 26, 396
BspMAI CTGCAG 1 cut(s) 66
BspPI GGATC 6 cut(s) 330, 389, 402, 438, 1417, 1529
BspQI GCTCTTC 1 cut(s) 444
BspTI CTTAAG 1 cut(s) 1369
BspTNI GGTCTC 1 cut(s) 1421
BsrBI CCGCTC 1 cut(s) 1442
BsrI ACTGG 2 cut(s) 1114, 1195
BssECI CCNNGG 3 cut(s) 1026, 1215, 1620
BssSI CACGAG 1 cut(s) 720
BssT1I CCWWGG 1 cut(s) 1215
Bst2BI CACGAG 1 cut(s) 720
Bst2UI CCWGG 1 cut(s) 1103
Bst4CI ACNGT 6 cut(s) 635, 1027, 1141, 1174, 1279, 1342
BstAFI CTTAAG 1 cut(s) 1369
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 1078, 1585
BstDEI CTNAG 4 cut(s) 795, 1146, 1248, 1443
BstDSI CCRYGG 2 cut(s) 1026, 1215
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 5 cut(s) 625, 748, 1183, 1405, 1633
BstFNI CGCG 2 cut(s) 344, 1523
BstHHI GCGC 2 cut(s) 346, 1156
BstMAI GTCTC 5 cut(s) 378, 476, 1130, 1270, 1421
BstMWI GCNNNNNNNGC 3 cut(s) 61, 716, 755
BstNI CCWGG 1 cut(s) 1103
BstNSI RCATGY 1 cut(s) 59
BstSCI CCNGG 1 cut(s) 1101
BstSFI CTRYAG 1 cut(s) 62
BstUI CGCG 2 cut(s) 344, 1523
BstV1I GCAGC 3 cut(s) 63, 1231, 1397
BstV2I GAAGAC 2 cut(s) 270, 291
BstX2I RGATCY 4 cut(s) 394, 430, 1373, 1409
BstXI CCANNNNNNTGG 2 cut(s) 1109, 1222
BstYI RGATCY 4 cut(s) 394, 430, 1373, 1409
Bsu15I ATCGAT 1 cut(s) 1418
BsuI GTATCC 1 cut(s) 1291
BsuRI GGCC 1 cut(s) 764
BsuTUI ATCGAT 1 cut(s) 1418
BtgI CCRYGG 2 cut(s) 1026, 1215
BtgZI GCGATG 1 cut(s) 989
BtrI CACGTC 1 cut(s) 1201
BtsCI GGATG 5 cut(s) 625, 748, 1183, 1405, 1633
BtsI GCAGTG 2 cut(s) 765, 1601
BtsIMutI CAGTG 4 cut(s) 765, 786, 1587, 1601
Cac8I GCNNGC 2 cut(s) 1078, 1585
CaiI CAGNNNCTG 2 cut(s) 1139, 1247
CciI TCATGA 2 cut(s) 712, 1531
CfoI GCGC 2 cut(s) 346, 1156
Cfr13I GGNCC 1 cut(s) 763
ClaI ATCGAT 1 cut(s) 1418
CseI GACGC 2 cut(s) 350, 1529
Csp6I GTAC 4 cut(s) 894, 1035, 1068, 1464
CspCI CAANNNNNGTGG 2 cut(s) 849, 884
CviQI GTAC 4 cut(s) 894, 1035, 1068, 1464
DdeI CTNAG 4 cut(s) 795, 1146, 1248, 1443
DraI TTTAAA 1 cut(s) 903
DrdI GACNNNNNNGTC 1 cut(s) 1354
DseDI GACNNNNNNGTC 1 cut(s) 1354
Ecl136II GAGCTC 1 cut(s) 960
Eco130I CCWWGG 1 cut(s) 1215
Eco24I GRGCYC 1 cut(s) 962
Eco31I GGTCTC 1 cut(s) 1421
Eco53kI GAGCTC 1 cut(s) 960
Eco57I CTGAAG 2 cut(s) 318, 455
Eco88I CYCGRG 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 960
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 1101
EcoT14I CCWWGG 1 cut(s) 1215
EcoT38I GRGCYC 1 cut(s) 962
ErhI CCWWGG 1 cut(s) 1215
Esp3I CGTCTC 1 cut(s) 378
FaqI GGGAC 1 cut(s) 1525
FbaI TGATCA 3 cut(s) 3, 997, 1203
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 5 cut(s) 77, 1245, 1386, 1440, 1647
FokI GGATG 5 cut(s) 632, 755, 1190, 1412, 1640
FriOI GRGCYC 1 cut(s) 962
Fsp4HI GCNGC 5 cut(s) 77, 1245, 1386, 1440, 1647
FspBI CTAG 2 cut(s) 753, 845
GlaI GCGC 2 cut(s) 345, 1155
GluI GCNGC 5 cut(s) 77, 1245, 1386, 1440, 1647
GsuI CTGGAG 2 cut(s) 528, 1212
HaeIII GGCC 1 cut(s) 764
HapII CCGG 2 cut(s) 168, 1607
HgaI GACGC 2 cut(s) 350, 1529
HhaI GCGC 2 cut(s) 346, 1156
Hin6I GCGC 2 cut(s) 344, 1154
HinP1I GCGC 2 cut(s) 344, 1154
HincII GTYRAC 1 cut(s) 1089
HindII GTYRAC 1 cut(s) 1089
HpaII CCGG 2 cut(s) 168, 1607
HphI GGTGA 9 cut(s) 61, 197, 635, 647, 991, 1042, 1075, 1499, 1555
Hpy166II GTNNAC 2 cut(s) 340, 1089
Hpy188III TCNNGA 6 cut(s) 713, 830, 1301, 1314, 1407, 1532
Hpy8I GTNNAC 2 cut(s) 340, 1089
HpyAV CCTTC 5 cut(s) 224, 263, 542, 610, 1484
HpyCH4III ACNGT 6 cut(s) 635, 1027, 1141, 1174, 1279, 1342
HpyCH4IV ACGT 1 cut(s) 1200
HpyCH4V TGCA 4 cut(s) 64, 310, 758, 1646
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 716, 755
HpyF3I CTNAG 4 cut(s) 795, 1146, 1248, 1443
HpySE526I ACGT 1 cut(s) 1200
HspAI GCGC 2 cut(s) 344, 1154
Ksp22I TGATCA 3 cut(s) 3, 997, 1203
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 3 cut(s) 272, 503, 1382
Lsp1109I GCAGC 3 cut(s) 63, 1231, 1397
LweI GCATC 3 cut(s) 736, 1319, 1426
MaeI CTAG 2 cut(s) 753, 845
MaeII ACGT 1 cut(s) 1200
MaeIII GTNAC 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 1442
MflI RGATCY 4 cut(s) 394, 430, 1373, 1409
MhlI GDGCHC 1 cut(s) 962
MluCI AATT 7 cut(s) 572, 667, 730, 856, 1051, 1270, 1290
MlyI GAGTC 4 cut(s) 1157, 1463, 1493, 1519
MseI TTAA 4 cut(s) 902, 968, 1287, 1370
MslI CAYNNNNRTG 2 cut(s) 120, 1220
MspA1I CMGCKG 2 cut(s) 1244, 1388
MspCI CTTAAG 1 cut(s) 1369
MspI CCGG 2 cut(s) 168, 1607
MspR9I CCNGG 1 cut(s) 1103
Mva1269I GAATGC 2 cut(s) 115, 712
MvaI CCWGG 1 cut(s) 1103
MvnI CGCG 2 cut(s) 344, 1523
MwoI GCNNNNNNNGC 3 cut(s) 61, 716, 755
NcoI CCATGG 1 cut(s) 1215
NlaIV GGNNCC 2 cut(s) 26, 396
NspI RCATGY 1 cut(s) 59
PagI TCATGA 2 cut(s) 712, 1531
PciSI GCTCTTC 1 cut(s) 444
PctI GAATGC 2 cut(s) 115, 712
PfeI GAWTC 9 cut(s) 42, 358, 826, 1259, 1297, 1319, 1472, 1544, 1553
PflMI CCANNNNNTGG 1 cut(s) 200
PkrI GCNGC 5 cut(s) 78, 1246, 1387, 1441, 1648
PleI GAGTC 4 cut(s) 1156, 1462, 1493, 1519
PpsI GAGTC 4 cut(s) 1156, 1462, 1493, 1519
PsiI TTATAA 1 cut(s) 782
Psp124BI GAGCTC 1 cut(s) 962
Psp6I CCWGG 1 cut(s) 1101
PspGI CCWGG 1 cut(s) 1101
PspN4I GGNNCC 2 cut(s) 26, 396
PspPI GGNCC 1 cut(s) 763
PstI CTGCAG 1 cut(s) 66
PstNI CAGNNNCTG 2 cut(s) 1139, 1247
PsuI RGATCY 4 cut(s) 394, 430, 1373, 1409
PvuII CAGCTG 2 cut(s) 1244, 1388
RsaI GTAC 4 cut(s) 895, 1036, 1069, 1465
RsaNI GTAC 4 cut(s) 894, 1035, 1068, 1464
RseI CAYNNNNRTG 2 cut(s) 120, 1220
SacI GAGCTC 1 cut(s) 962
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 4 cut(s) 902, 968, 1287, 1370
SatI GCNGC 5 cut(s) 77, 1245, 1386, 1440, 1647
Sau96I GGNCC 1 cut(s) 763
SchI GAGTC 4 cut(s) 1157, 1463, 1493, 1519
ScrFI CCNGG 1 cut(s) 1103
SduI GDGCHC 1 cut(s) 962
SfaNI GCATC 3 cut(s) 736, 1319, 1426
SfcI CTRYAG 1 cut(s) 62
SmiMI CAYNNNNRTG 2 cut(s) 120, 1220
SmlI CTYRAG 1 cut(s) 1369
SmoI CTYRAG 1 cut(s) 1369
Sse9I AATT 7 cut(s) 572, 667, 730, 856, 1051, 1270, 1290
SsiI CCGC 4 cut(s) 10, 557, 953, 1440
SspMI CTAG 2 cut(s) 753, 845
SstI GAGCTC 1 cut(s) 962
StyD4I CCNGG 1 cut(s) 1101
StyI CCWWGG 1 cut(s) 1215
TaaI ACNGT 6 cut(s) 635, 1027, 1141, 1174, 1279, 1342
TaiI ACGT 1 cut(s) 1203
TaqI TCGA 1 cut(s) 1418
TasI AATT 7 cut(s) 572, 667, 730, 856, 1051, 1270, 1290
TatI WGTACW 1 cut(s) 1067
TauI GCSGC 1 cut(s) 1442
TfiI GAWTC 9 cut(s) 42, 358, 826, 1259, 1297, 1319, 1472, 1544, 1553
Tru1I TTAA 4 cut(s) 902, 968, 1287, 1370
Tru9I TTAA 4 cut(s) 902, 968, 1287, 1370
TscAI CASTG 4 cut(s) 765, 793, 1594, 1608
TseI GCWGC 4 cut(s) 76, 1244, 1385, 1646
TspGWI ACGGA 1 cut(s) 1395
TspRI CASTG 4 cut(s) 765, 793, 1594, 1608
Van91I CCANNNNNTGG 1 cut(s) 200
Vha464I CTTAAG 1 cut(s) 1369
XagI CCTNNNNNAGG 1 cut(s) 179
XapI RAATTY 3 cut(s) 572, 667, 1270
XceI RCATGY 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 2 cut(s) 753, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.