Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004920.1

Orthogroup ID

OG0003510

Physical Location & Seq

Genomic Coordinates Reverse (-)

15366 .. 16929

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004920.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

atgttgaagaagccgccaagtaggaatcacagaaccaaacgaatcaaggtgaagcatattttgcagattgccctgctccttggggtttgcttttggttgctttatcagctcaagcattcccatgataagaaattggcgttggatgagaaagctgcaaaagcctcaatcagatccctgagtgaaggtgagcttctcaaacttgggaggaaagaccttcctcacaaggacgtcagtaaaaatgtgaaacaagaggaagaggaggaagaagaaactgcaggagacgaagaagagaagcatgaggtagaagggcgagaagaagaagatcaaaaacatgaagtagaagagcgagaagaagaggatctgaagcatgatgtagaagcgcaagaggaggaggaaagcaagaatgatgatacagaagatgagggaggagctggagatgatgagatagatgaaaatgagcaagagagaaaagaaggaaaaattgaccatgaagaagacattttagatgaagagagagaaagagaagatgagggtgatgagaaggatggtgaccggaatgagagggaagagagagagggtcaagcagaaaatgataactcatcagacgatcaagacaatgacgaaggtgataagaatgctcatgaggcacgagaggaacattacaagggggatgatgcttctagtgcagtgacccatgatgcccaagttataagcactgaaactgagaaagtaagttcagaaagtggaaatgagaactctggaagcagctctctggaaaaggagataaaatctaattacactgaggatataaatggaaaccaaaacaattcaagattgttggatggtagtacggccgaaaatggcactgtaagtctggctgcaagtgaagagaaagttgatgaaaatttgtccaatcctgtggacagctcagttttaaatgcaactatgaaagtacagtctgatgatataacagaagcagacaataactcgacaaatgtgagtacagaatcgagcaacaactcacaggaagacaaccaggcaaatggaacagaaactgtatctgtgtcagctcactctcaaaatggtacattggacggtatgactactagagagggaattgccggagaaaccttgtttctagtaataaggttaagatctaatggcacagctcaactggaggatgactccaggtcttcaacaataaatgagtctacagatgccacaaagaatgaagaattgaagaatgaagatgccaacaagaatgaggaaataaagaatgaagaggccaccaagaacaaagacttgaatggcacaagtgaatccggcaagactggcaacagttcagactctagaaatgggatggaggatgcagttcagcatgaccccatcgattcttctgattccctattctccgaagacaagaaagaggttcgcacggagttagatacatcgccagagatgaaaacagagggcaatgagaatggacaggctgcaaaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

500

Amino Acids

55.61

Weight (kDa)

4.38

Isoelectric Point (pI)

50.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33740 AT4G33740 AT4G33740 AT4G33740 AT4G33740
fragaria_vesca	FvH4_2g02971 FvH4_2g02971
malus_domestica	MD05G1108600.v1.1 MD10G1112600.v1.1
prunus_persica	Prupe.8G152300_v2.0.a1
pyrus_communis	pycom05g10460 pycom10g09740
rosa_chinensis	RchiOBHm_Chr1g0336871 RchiOBHm_Chr6g0247781
rosa_laevigata	RLG00000015180 RLG00000029328
rosa_multiflora	Rmu_sc0001983.1_g000010 Rmu_sc0004920.1_g000004 Rmu_sc0009569.1_g000009 Rmu_sc0018000.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433250 Rroxscaffold_4G00315280 Rroxscaffold_7G00213660
rosa_rugosa	Rorug01G0128600 Rorug05G0528500
rosa_samantha	Rh1AG149300 Rh1BG117700 Rh1CG140500 Rh1DG156600 Rh6AG043600 Rh6BG038300 Rh6CG037100 Rh6DG034200
rosa_wichuraiana	Rw1G012080 Rw6G003780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	710
AatII	GACGTC	1 cut(s)	231
AccI	GTMKAC	1 cut(s)	1211
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	165, 366
AcoI	YGGCCR	1 cut(s)	852
AcsI	RAATTY	1 cut(s)	904
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	4 cut(s)	850, 954, 1003, 1087
AgsI	TTSAA	5 cut(s)	7, 831, 1197, 1240, 1306
AhdI	GACNNNNNGTC	1 cut(s)	1189
AjnI	CCWGG	2 cut(s)	1035, 1187
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	8 cut(s)	109, 152, 190, 431, 768, 927, 1070, 1169
AluI	AGCT	8 cut(s)	109, 152, 190, 431, 768, 927, 1070, 1169
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	165, 366
AlwNI	CAGNNNCTG	1 cut(s)	1055
AoxI	GGCC	2 cut(s)	852, 1284
ApeKI	GCWGC	4 cut(s)	152, 765, 878, 1490
ApoI	RAATTY	1 cut(s)	904
AspLEI	GCGC	1 cut(s)	382
AsuHPI	GGTGA	5 cut(s)	61, 197, 545, 560, 638
BauI	CACGAG	1 cut(s)	648
BbsI	GAAGAC	4 cut(s)	501, 1035, 1185, 1422
BbvI	GCAGC	4 cut(s)	139, 777, 865, 1477
BccI	CCATC	4 cut(s)	539, 836, 1354, 1394
BceAI	ACGGC	1 cut(s)	867
BciT130I	CCWGG	2 cut(s)	1037, 1189
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	4 cut(s)	681, 1107, 1139, 1350
BfmI	CTRYAG	2 cut(s)	273, 1212
BglII	AGATCT	1 cut(s)	1154
BisI	GCNGC	5 cut(s)	14, 153, 766, 879, 1491
BlsI	GCNGC	5 cut(s)	15, 154, 767, 880, 1492
Bme1390I	CCNGG	2 cut(s)	1037, 1189
BmeRI	GACNNNNNGTC	1 cut(s)	1189
BmrFI	CCNGG	2 cut(s)	1037, 1189
BmsI	GCATC	5 cut(s)	664, 688, 1207, 1240, 1357
BpiI	GAAGAC	4 cut(s)	501, 1035, 1185, 1422
BplI	GAGNNNNNCTC	2 cut(s)	1169, 1201
BpmI	CTGGAG	3 cut(s)	453, 1171, 1196
BpuEI	CTTGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	1389
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	1 cut(s)	79
BsaWI	WCCGGW	1 cut(s)	552
Bse1I	ACTGG	2 cut(s)	1179, 1336
Bse3DI	GCAATG	1 cut(s)	1480
BseBI	CCWGG	2 cut(s)	1037, 1189
BseCI	ATCGAT	1 cut(s)	1389
BseDI	CCNNGG	1 cut(s)	79
BseGI	GGATG	7 cut(s)	148, 550, 676, 847, 1186, 1365, 1372
BseMI	GCAATG	1 cut(s)	1480
BseMII	CTCAG	4 cut(s)	167, 714, 792, 942
BseNI	ACTGG	2 cut(s)	1179, 1336
BseRI	GAGGAG	4 cut(s)	272, 401, 404, 441
BseX3I	CGGCCG	1 cut(s)	852
BseXI	GCAGC	4 cut(s)	139, 777, 865, 1477
BsgI	GTGCAG	1 cut(s)	705
Bsh1285I	CGRYCG	1 cut(s)	855
BshFI	GGCC	2 cut(s)	854, 1286
BshVI	ATCGAT	1 cut(s)	1389
BsiEI	CGRYCG	1 cut(s)	855
BsiSI	CCGG	3 cut(s)	553, 1122, 1323
BsmAI	GTCTC	1 cut(s)	273
BsmBI	CGTCTC	1 cut(s)	273
BsmI	GAATGC	2 cut(s)	115, 640
BsnI	GGCC	2 cut(s)	854, 1286
Bsp143I	GATC	5 cut(s)	170, 322, 358, 607, 1154
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	854, 1286
BspCNI	CTCAG	4 cut(s)	168, 715, 793, 941
BspDI	ATCGAT	1 cut(s)	1389
BspHI	TCATGA	1 cut(s)	640
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	165, 366
BspQI	GCTCTTC	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	1480
BsrI	ACTGG	2 cut(s)	1179, 1336
BssECI	CCNNGG	1 cut(s)	79
BssMI	GATC	5 cut(s)	170, 322, 358, 607, 1154
BssNI	GRCGYC	1 cut(s)	228
BssSI	CACGAG	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	648
Bst2UI	CCWGG	2 cut(s)	1037, 1189
Bst4CI	ACNGT	5 cut(s)	868, 957, 1057, 1097, 1340
Bst6I	CTCTTC	8 cut(s)	249, 282, 336, 348, 504, 561, 882, 1275
BstACI	GRCGYC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstDEI	CTNAG	4 cut(s)	176, 723, 801, 928
BstEII	GGTNACC	1 cut(s)	548
BstF5I	GGATG	7 cut(s)	148, 550, 676, 847, 1186, 1365, 1372
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	5 cut(s)	173, 325, 361, 610, 1157
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	5 cut(s)	170, 322, 358, 607, 1154
BstMCI	CGRYCG	1 cut(s)	855
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 106, 158, 644, 683, 1332
BstNI	CCWGG	2 cut(s)	1037, 1189
BstPI	GGTNACC	1 cut(s)	548
BstSCI	CCNGG	2 cut(s)	1035, 1187
BstSFI	CTRYAG	2 cut(s)	273, 1212
BstV1I	GCAGC	4 cut(s)	139, 777, 865, 1477
BstV2I	GAAGAC	4 cut(s)	501, 1035, 1185, 1422
BstX2I	RGATCY	3 cut(s)	170, 358, 1154
BstXI	CCANNNNNNTGG	2 cut(s)	919, 1043
BstYI	RGATCY	3 cut(s)	170, 358, 1154
BstZI	CGGCCG	1 cut(s)	852
Bsu15I	ATCGAT	1 cut(s)	1389
BsuRI	GGCC	2 cut(s)	854, 1286
BsuTUI	ATCGAT	1 cut(s)	1389
BtgZI	GCGATG	1 cut(s)	1434
BtsCI	GGATG	7 cut(s)	148, 550, 676, 847, 1186, 1365, 1372
BtsI	GCAGTG	1 cut(s)	693
BtsIMutI	CAGTG	4 cut(s)	693, 714, 798, 864
CaiI	CAGNNNCTG	1 cut(s)	1055
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	1389
Csp6I	GTAC	4 cut(s)	849, 953, 1002, 1086
CviAII	CATG	8 cut(s)	122, 296, 332, 368, 488, 641, 695, 1379
CviQI	GTAC	4 cut(s)	849, 953, 1002, 1086
DdeI	CTNAG	4 cut(s)	176, 723, 801, 928
DpnI	GATC	5 cut(s)	172, 324, 360, 609, 1156
DpnII	GATC	5 cut(s)	170, 322, 358, 607, 1154
DraI	TTTAAA	1 cut(s)	936
DriI	GACNNNNNGTC	1 cut(s)	1189
EaeI	YGGCCR	1 cut(s)	852
EagI	CGGCCG	1 cut(s)	852
Eam1104I	CTCTTC	8 cut(s)	249, 282, 336, 348, 504, 561, 882, 1275
Eam1105I	GACNNNNNGTC	1 cut(s)	1189
EarI	CTCTTC	8 cut(s)	249, 282, 336, 348, 504, 561, 882, 1275
EclXI	CGGCCG	1 cut(s)	852
Eco130I	CCWWGG	1 cut(s)	79
Eco52I	CGGCCG	1 cut(s)	852
Eco57I	CTGAAG	1 cut(s)	383
Eco91I	GGTNACC	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	548
EcoRII	CCWGG	2 cut(s)	1035, 1187
EcoT14I	CCWWGG	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	8 cut(s)	125, 299, 335, 371, 491, 644, 698, 1382
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	8 cut(s)	121, 295, 331, 367, 487, 640, 694, 1378
FblI	GTMKAC	1 cut(s)	1211
Fnu4HI	GCNGC	5 cut(s)	14, 153, 766, 879, 1491
FokI	GGATG	7 cut(s)	155, 557, 683, 854, 1193, 1372, 1379
Fsp4HI	GCNGC	5 cut(s)	14, 153, 766, 879, 1491
FspBI	CTAG	4 cut(s)	681, 1107, 1139, 1350
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	5 cut(s)	14, 153, 766, 879, 1491
GsuI	CTGGAG	3 cut(s)	453, 1171, 1196
HaeIII	GGCC	2 cut(s)	854, 1286
HapII	CCGG	3 cut(s)	553, 1122, 1323
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	8 cut(s)	125, 299, 335, 371, 491, 644, 698, 1382
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	9 cut(s)	25, 42, 1007, 1184, 1208, 1319, 1346, 1391, 1400
HpaII	CCGG	3 cut(s)	553, 1122, 1323
HphI	GGTGA	5 cut(s)	61, 197, 545, 560, 638
Hpy166II	GTNNAC	2 cut(s)	922, 1212
Hpy188I	TCNGA	8 cut(s)	170, 363, 604, 739, 961, 1345, 1399, 1414
Hpy188III	TCNNGA	6 cut(s)	611, 641, 759, 773, 831, 1350
Hpy8I	GTNNAC	2 cut(s)	922, 1212
HpyAV	CCTTC	6 cut(s)	176, 224, 299, 467, 535, 617
HpyCH4III	ACNGT	5 cut(s)	868, 957, 1057, 1097, 1340
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	8 cut(s)	64, 155, 275, 686, 881, 941, 1370, 1493
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 106, 158, 644, 683, 1332
HpyF3I	CTNAG	4 cut(s)	176, 723, 801, 928
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	8 cut(s)	125, 299, 335, 371, 491, 644, 698, 1382
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	5 cut(s)	170, 322, 358, 607, 1154
LguI	GCTCTTC	1 cut(s)	336
LmnI	GCTCC	2 cut(s)	81, 428
Lsp1109I	GCAGC	4 cut(s)	139, 777, 865, 1477
LweI	GCATC	5 cut(s)	664, 688, 1207, 1240, 1357
MaeI	CTAG	4 cut(s)	681, 1107, 1139, 1350
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	548, 688
MalI	GATC	5 cut(s)	172, 324, 360, 609, 1156
MboI	GATC	5 cut(s)	170, 322, 358, 607, 1154
MflI	RGATCY	3 cut(s)	170, 358, 1154
MluCI	AATT	7 cut(s)	131, 480, 793, 826, 904, 1116, 1235
MlyI	GAGTC	3 cut(s)	1178, 1217, 1340
MmeI	TCCRAC	2 cut(s)	120, 819
MseI	TTAA	2 cut(s)	935, 1151
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	3 cut(s)	553, 1122, 1323
MspR9I	CCNGG	2 cut(s)	1037, 1189
Mva1269I	GAATGC	2 cut(s)	115, 640
MvaI	CCWGG	2 cut(s)	1037, 1189
MwoI	GCNNNNNNNGC	6 cut(s)	61, 106, 158, 644, 683, 1332
NdeII	GATC	5 cut(s)	170, 322, 358, 607, 1154
NlaIII	CATG	8 cut(s)	125, 299, 335, 371, 491, 644, 698, 1382
NmuCI	GTSAC	2 cut(s)	548, 688
PagI	TCATGA	1 cut(s)	640
PciSI	GCTCTTC	1 cut(s)	336
PctI	GAATGC	2 cut(s)	115, 640
PfeI	GAWTC	6 cut(s)	25, 42, 1007, 1319, 1391, 1400
PkrI	GCNGC	5 cut(s)	15, 154, 767, 880, 1492
PleI	GAGTC	3 cut(s)	1178, 1216, 1340
PpsI	GAGTC	3 cut(s)	1178, 1216, 1340
PsiI	TTATAA	1 cut(s)	710
Psp6I	CCWGG	2 cut(s)	1035, 1187
PspEI	GGTNACC	1 cut(s)	548
PspGI	CCWGG	2 cut(s)	1035, 1187
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	1055
PsuI	RGATCY	3 cut(s)	170, 358, 1154
RsaI	GTAC	4 cut(s)	850, 954, 1003, 1087
RsaNI	GTAC	4 cut(s)	849, 953, 1002, 1086
RseI	CAYNNNNRTG	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	935, 1151
SatI	GCNGC	5 cut(s)	14, 153, 766, 879, 1491
Sau3AI	GATC	5 cut(s)	170, 322, 358, 607, 1154
SchI	GAGTC	3 cut(s)	1178, 1217, 1340
ScrFI	CCNGG	2 cut(s)	1037, 1189
SfaNI	GCATC	5 cut(s)	664, 688, 1207, 1240, 1357
SfcI	CTRYAG	2 cut(s)	273, 1212
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	7 cut(s)	131, 480, 793, 826, 904, 1116, 1235
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	4 cut(s)	681, 1107, 1139, 1350
StyD4I	CCNGG	2 cut(s)	1035, 1187
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	868, 957, 1057, 1097, 1340
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	989, 1010, 1389
TasI	AATT	7 cut(s)	131, 480, 793, 826, 904, 1116, 1235
TatI	WGTACW	2 cut(s)	952, 1001
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	6 cut(s)	25, 42, 1007, 1319, 1391, 1400
Tru1I	TTAA	2 cut(s)	935, 1151
Tru9I	TTAA	2 cut(s)	935, 1151
TscAI	CASTG	4 cut(s)	693, 721, 805, 871
TseFI	GTSAC	2 cut(s)	548, 688
TseI	GCWGC	4 cut(s)	152, 765, 878, 1490
Tsp45I	GTSAC	2 cut(s)	548, 688
TspGWI	ACGGA	1 cut(s)	1451
TspRI	CASTG	4 cut(s)	693, 721, 805, 871
XapI	RAATTY	1 cut(s)	904
XbaI	TCTAGA	1 cut(s)	1349
XmiI	GTMKAC	1 cut(s)	1211
XspI	CTAG	4 cut(s)	681, 1107, 1139, 1350
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.