AT4G33780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004736
Physical Location & Seq
Reverse (-)
16201661 .. 16203652
1992 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33780.1

Sequence Viewer

Length: 612 bp
ATGCCATTTTCCGCATCAATCTCATCGCCTTCTTCTTCTGTCGCGCTTCTTCGATCGCCTCTCTCTTTCTTCATCTTCACTCCCAAAACCCTAATCTTCACCAGAACCAGGATCTCTGGTTTCCCTTATCTTGCTTCCCGGCGATCCCGCGATTTCATCAACGGGAGGGATGATTTCGCTGACGATACGAGGAGCTGGAACCGGAAGATCAAACCGGAGTATGGGTTCGATGAGGATTACGATGGAGAAGAAGATGATGATGATCACGAGGAAGAAGATAGAAGCTTGGATCTGTTACTTAGATTTGTAGAAAATGTTTTCAGAAAGATTTCTAAGAGAGCAAGGAAAGCTGTCCGATCAATTTTGCCTGTTTCGATCTCTACGAAGCTCGTGGGGTTTTCAGTGAATGGAGTACTTATTCTTGCTTTTTTGTGGATTTTGAAGGCTTTCCTCGAGGTAGCTTGCACACTTGGAACTATTGTATTTACGAGCATTCTACTTATACGTGGACTTTGGGCCGGAGTAGCATACATGCAAGAGAGCCGCAACAATAGGATCAATGAACTCGCTGATGATCCTCGTGCATGGAACGGGATGCAACCAGTTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

23.14

Weight (kDa)

6.62

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 452
AccII CGCG 2 cut(s) 44, 150
AciI CCGC 3 cut(s) 12, 148, 544
AclWI GGATC 5 cut(s) 119, 138, 297, 563, 569
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 2 cut(s) 108, 221
AgsI TTSAA 1 cut(s) 442
AjnI CCWGG 1 cut(s) 107
AloI GAACNNNNNNTCC 2 cut(s) 209, 241
AluBI AGCT 5 cut(s) 195, 285, 350, 388, 461
AluI AGCT 5 cut(s) 195, 285, 350, 388, 461
AlwI GGATC 5 cut(s) 119, 138, 297, 563, 569
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 1 cut(s) 516
Asp700I GAANNNNTTC 2 cut(s) 328, 446
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 452
BauI CACGAG 3 cut(s) 266, 389, 579
BccI CCATC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 109
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 139
BisI GCNGC 1 cut(s) 544
BlsI GCNGC 1 cut(s) 545
BmcAI AGTACT 1 cut(s) 414
Bme1390I CCNGG 2 cut(s) 109, 139
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 2 cut(s) 109, 139
BmsI GCATC 2 cut(s) 23, 585
BpuMI CCSGG 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 261
BsaWI WCCGGW 2 cut(s) 201, 214
BsaXI ACNNNNNCTCC 2 cut(s) 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 221
Bse1I ACTGG 1 cut(s) 602
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 175, 600
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 108, 221
BseNI ACTGG 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 205
Bsh1236I CGCG 2 cut(s) 44, 150
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 4 cut(s) 139, 202, 215, 519
BslI CCNNNNNNNGG 2 cut(s) 108, 221
BsmI GAATGC 1 cut(s) 492
BsnI GGCC 1 cut(s) 518
BsoBI CYCGRG 1 cut(s) 452
BspACI CCGC 3 cut(s) 12, 148, 544
BspANI GGCC 1 cut(s) 518
BspFNI CGCG 2 cut(s) 44, 150
BspLI GGNNCC 1 cut(s) 200
BspPI GGATC 5 cut(s) 119, 138, 297, 563, 569
BsrI ACTGG 1 cut(s) 602
BssSI CACGAG 3 cut(s) 266, 389, 579
Bst2BI CACGAG 3 cut(s) 266, 389, 579
Bst2UI CCWGG 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 463
BstDEI CTNAG 2 cut(s) 299, 333
BstF5I GGATG 2 cut(s) 175, 600
BstFNI CGCG 2 cut(s) 44, 150
BstHHI GCGC 1 cut(s) 46
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 2 cut(s) 347, 524
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 535
BstSCI CCNGG 2 cut(s) 107, 137
BstUI CGCG 2 cut(s) 44, 150
BstX2I RGATCY 2 cut(s) 111, 289
BstYI RGATCY 2 cut(s) 111, 289
BsuRI GGCC 1 cut(s) 518
BtgZI GCGATG 1 cut(s) 9
BtsCI GGATG 2 cut(s) 175, 600
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 463
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 516
Csp6I GTAC 1 cut(s) 413
CviAII CATG 2 cut(s) 532, 585
CviJI RGCY 8 cut(s) 195, 285, 350, 388, 446, 461, 518, 543
CviKI_1 RGCY 8 cut(s) 195, 285, 350, 388, 446, 461, 518, 543
CviQI GTAC 1 cut(s) 413
DdeI CTNAG 2 cut(s) 299, 333
Eco88I CYCGRG 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 107
FaeI CATG 2 cut(s) 535, 588
FaiI YATR 5 cut(s) 222, 503, 529, 533, 586
FatI CATG 2 cut(s) 531, 584
FauI CCCGC 1 cut(s) 155
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 544
FokI GGATG 2 cut(s) 182, 607
Fsp4HI GCNGC 1 cut(s) 544
GlaI GCGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 544
HaeIII GGCC 1 cut(s) 518
HapII CCGG 4 cut(s) 139, 202, 215, 519
HhaI GCGC 1 cut(s) 46
Hin1II CATG 2 cut(s) 535, 588
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 283
HpaII CCGG 4 cut(s) 139, 202, 215, 519
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 1 cut(s) 509
Hpy188I TCNGA 2 cut(s) 323, 356
Hpy188III TCNNGA 2 cut(s) 266, 609
Hpy8I GTNNAC 1 cut(s) 509
HpyAV CCTTC 2 cut(s) 39, 436
HpyCH4IV ACGT 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 465, 535, 584, 598
HpyF10VI GCNNNNNNNGC 2 cut(s) 347, 524
HpyF3I CTNAG 2 cut(s) 299, 333
HpySE526I ACGT 1 cut(s) 505
Hsp92II CATG 2 cut(s) 535, 588
HspAI GCGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 262
LmnI GCTCC 1 cut(s) 192
LweI GCATC 2 cut(s) 23, 585
MaeII ACGT 1 cut(s) 505
MaeIII GTNAC 1 cut(s) 294
MflI RGATCY 2 cut(s) 111, 289
MluCI AATT 1 cut(s) 360
MnlI CCTC 8 cut(s) 69, 159, 183, 226, 262, 448, 461, 588
MroXI GAANNNNTTC 2 cut(s) 328, 446
MspI CCGG 4 cut(s) 139, 202, 215, 519
MspR9I CCNGG 2 cut(s) 109, 139
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 1 cut(s) 109
MvnI CGCG 2 cut(s) 44, 150
MwoI GCNNNNNNNGC 2 cut(s) 347, 524
NciI CCSGG 1 cut(s) 139
NlaIII CATG 2 cut(s) 535, 588
NlaIV GGNNCC 1 cut(s) 200
NspI RCATGY 1 cut(s) 535
PaeR7I CTCGAG 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 380
PctI GAATGC 1 cut(s) 492
PdmI GAANNNNTTC 2 cut(s) 328, 446
PkrI GCNGC 1 cut(s) 545
Ple19I CGATCG 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 506
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 516
PspXI VCTCGAGB 1 cut(s) 452
PsuI RGATCY 2 cut(s) 111, 289
PvuI CGATCG 1 cut(s) 56
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SatI GCNGC 1 cut(s) 544
Sau96I GGNCC 1 cut(s) 516
ScaI AGTACT 1 cut(s) 414
ScrFI CCNGG 2 cut(s) 109, 139
SetI ASST 7 cut(s) 197, 287, 352, 390, 459, 463, 508
SfaNI GCATC 2 cut(s) 23, 585
Sfr274I CTCGAG 1 cut(s) 452
SlaI CTCGAG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 1 cut(s) 360
SsiI CCGC 3 cut(s) 12, 148, 544
StyD4I CCNGG 2 cut(s) 107, 137
TaiI ACGT 1 cut(s) 508
TaqI TCGA 4 cut(s) 52, 228, 374, 453
TasI AATT 1 cut(s) 360
TatI WGTACW 1 cut(s) 412
TauI GCSGC 1 cut(s) 546
TscAI CASTG 1 cut(s) 408
TspDTI ATGAA 3 cut(s) 61, 145, 576
TspRI CASTG 1 cut(s) 408
XceI RCATGY 1 cut(s) 535
XhoI CTCGAG 1 cut(s) 452
XmnI GAANNNNTTC 2 cut(s) 328, 446
ZrmI AGTACT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.