Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Forward (+)

16407067 .. 16411097

Gene Structure 4031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G150800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCCCTTCTCTGCAACTCTCTCACGTCCCACTCTTTCTTACTTCCCTCAAACACAACAACACCAACAACAATTGCATCTTCCTCACTTCCTCAATCCCTATCTCAAACCGAAAAGTTTCAGTCTTCAATTTCAATGCGCCCAAGCCTCCAGACGAACCCCTAATTACCCTCAGGGCGGCGCTGATAATCTGGTTGATGATCCGCGCAACTGGAGCCGTTCGATCAACTCCGAGGTCGACCGGCACTACAATTTCGAAGACGATGATGAAGACGATGAGGATGACGACGATGATGAAGAAGAAGATAGGAGTTTGGATTTATTGGTGAGGTTTGTTCAGAATATGTTCAAGAAGGTCTCCAGGCGAGCCAGGAGGGCCGTACGATCAGTTCTCCCTGTCTCAATTCCCACCAAATTGGTGGGGTTTTCTGTTAATGGGGTGCTCATGCTGGCATTTTTATGGGTCTTGAAGGCATTTCTTGAGGTTGTTTGCACCCTTGGAAGTCTAGTGTTCGTAAGCATCTTACTCATCCGTGGGATATGGACTGGAGTAACCTACGTACAAGAAAACCGCACCCAGAAACTCCGCAATTTTGAAGATGAAAGCCGTCCGTGGACTGGCACACAGCCGGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.51

Weight (kDa)

5.6

Isoelectric Point (pI)

49.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	1 cut(s)	205
AciI	CCGC	4 cut(s)	177, 203, 571, 586
AclWI	GGATC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	381, 561
AfiI	CCNNNNNNNGG	2 cut(s)	176, 617
AgsI	TTSAA	5 cut(s)	128, 134, 349, 469, 596
AjiI	CACGTC	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	359, 368
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	2 cut(s)	361, 403
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	375
Asp700I	GAANNNNTTC	2 cut(s)	116, 344
AspLEI	GCGC	3 cut(s)	140, 182, 207
AspS9I	GGNCC	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	337
AsuII	TTCGAA	1 cut(s)	255
AxyI	CCTNAGG	1 cut(s)	171
BbsI	GAAGAC	3 cut(s)	116, 264, 276
Bbv12I	GWGCWC	1 cut(s)	444
BceAI	ACGGC	3 cut(s)	201, 362, 591
BciT130I	CCWGG	2 cut(s)	361, 370
BcoDI	GTCTC	2 cut(s)	361, 403
BfaI	CTAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	183
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	2 cut(s)	361, 370
BmgBI	CACGTC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	375
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	361, 370
BmsI	GCATC	2 cut(s)	85, 528
BpiI	GAAGAC	3 cut(s)	116, 264, 276
BpmI	CTGGAG	4 cut(s)	133, 232, 343, 567
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	500
BsaAI	YACGTR	1 cut(s)	559
BsaI	GGTCTC	1 cut(s)	361
BsaJI	CCNNGG	4 cut(s)	231, 496, 532, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 617
Bse118I	RCCGGY	2 cut(s)	240, 628
Bse1I	ACTGG	3 cut(s)	215, 550, 622
Bse21I	CCTNAGG	1 cut(s)	171
BseBI	CCWGG	2 cut(s)	361, 370
BseDI	CCNNGG	4 cut(s)	231, 496, 532, 611
BseGI	GGATG	2 cut(s)	286, 528
BseLI	CCNNNNNNNGG	2 cut(s)	176, 617
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	3 cut(s)	215, 550, 622
Bsh1236I	CGCG	1 cut(s)	205
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	377
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	2 cut(s)	241, 629
BsiWI	CGTACG	1 cut(s)	379
BslFI	GGGAC	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	176, 617
BsmAI	GTCTC	2 cut(s)	361, 403
BsmFI	GGGAC	1 cut(s)	12
BsnI	GGCC	1 cut(s)	377
Bso31I	GGTCTC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	199, 222, 383
BspACI	CCGC	4 cut(s)	177, 203, 571, 586
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	194
BspT104I	TTCGAA	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	361
BsrFI	RCCGGY	2 cut(s)	240, 628
BsrI	ACTGG	3 cut(s)	215, 550, 622
BssAI	RCCGGY	2 cut(s)	240, 628
BssECI	CCNNGG	4 cut(s)	231, 496, 532, 611
BssMI	GATC	3 cut(s)	199, 222, 383
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	2 cut(s)	361, 370
BstBAI	YACGTR	1 cut(s)	559
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	3 cut(s)	366, 450, 630
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	2 cut(s)	532, 611
BstF5I	GGATG	2 cut(s)	286, 528
BstFNI	CGCG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	183
BstHHI	GCGC	3 cut(s)	140, 182, 207
BstKTI	GATC	3 cut(s)	202, 225, 386
BstMAI	GTCTC	2 cut(s)	361, 403
BstMBI	GATC	3 cut(s)	199, 222, 383
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 374
BstNI	CCWGG	2 cut(s)	361, 370
BstSCI	CCNGG	2 cut(s)	359, 368
BstSNI	TACGTA	1 cut(s)	559
BstUI	CGCG	1 cut(s)	205
BstV2I	GAAGAC	3 cut(s)	116, 264, 276
BstXI	CCANNNNNNTGG	2 cut(s)	415, 418
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	377
BtgI	CCRYGG	2 cut(s)	532, 611
BtrI	CACGTC	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	286, 528
Cac8I	GCNNGC	3 cut(s)	366, 450, 630
CfoI	GCGC	3 cut(s)	140, 182, 207
Cfr10I	RCCGGY	2 cut(s)	240, 628
Cfr13I	GGNCC	1 cut(s)	375
Csp6I	GTAC	2 cut(s)	380, 560
CviAII	CATG	1 cut(s)	445
CviJI	RGCY	6 cut(s)	146, 216, 368, 377, 606, 628
CviKI_1	RGCY	6 cut(s)	146, 216, 368, 377, 606, 628
CviQI	GTAC	2 cut(s)	380, 560
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	201, 224, 385
DpnII	GATC	3 cut(s)	199, 222, 383
Eco105I	TACGTA	1 cut(s)	559
Eco130I	CCWWGG	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	361
Eco81I	CCTNAGG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	359, 368
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	448
FaiI	YATR	4 cut(s)	344, 446, 460, 541
FaqI	GGGAC	1 cut(s)	12
FatI	CATG	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	2 cut(s)	293, 515
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	3 cut(s)	139, 181, 206
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	4 cut(s)	133, 232, 343, 567
HaeII	RGCGCY	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	241, 629
HhaI	GCGC	3 cut(s)	140, 182, 207
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	3 cut(s)	138, 180, 205
HinP1I	GCGC	3 cut(s)	138, 180, 205
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HpaII	CCGG	2 cut(s)	241, 629
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	2 cut(s)	238, 615
Hpy188I	TCNGA	2 cut(s)	232, 339
Hpy188III	TCNNGA	4 cut(s)	150, 349, 466, 479
Hpy8I	GTNNAC	2 cut(s)	238, 615
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	3 cut(s)	16, 346, 463
HpyCH4IV	ACGT	2 cut(s)	25, 558
HpyCH4V	TGCA	3 cut(s)	14, 76, 492
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 374
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	25, 558
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	3 cut(s)	138, 180, 205
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
Kzo9I	GATC	3 cut(s)	199, 222, 383
LmnI	GCTCC	1 cut(s)	213
LweI	GCATC	2 cut(s)	85, 528
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	2 cut(s)	25, 558
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	3 cut(s)	201, 224, 385
MboI	GATC	3 cut(s)	199, 222, 383
MboII	GAAGA	8 cut(s)	71, 116, 269, 281, 308, 311, 314, 608
MfeI	CAATTG	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	7 cut(s)	71, 128, 163, 250, 402, 413, 589
MroNI	GCCGGC	1 cut(s)	628
MroXI	GAANNNNTTC	2 cut(s)	116, 344
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	2 cut(s)	241, 629
MspR9I	CCNGG	2 cut(s)	361, 370
MunI	CAATTG	1 cut(s)	71
MvaI	CCWGG	2 cut(s)	361, 370
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	2 cut(s)	213, 374
NaeI	GCCGGC	1 cut(s)	630
NdeII	GATC	3 cut(s)	199, 222, 383
NgoMIV	GCCGGC	1 cut(s)	628
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	1 cut(s)	215
NspV	TTCGAA	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	630
PdmI	GAANNNNTTC	2 cut(s)	116, 344
Pfl23II	CGTACG	1 cut(s)	379
PkrI	GCNGC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	359, 368
PspGI	CCWGG	2 cut(s)	359, 368
PspLI	CGTACG	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	375
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
RsaI	GTAC	2 cut(s)	381, 561
RsaNI	GTAC	2 cut(s)	380, 560
RseI	CAYNNNNRTG	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	3 cut(s)	199, 222, 383
Sau96I	GGNCC	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	361, 370
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	8 cut(s)	28, 237, 332, 357, 486, 557, 561, 638
SfaNI	GCATC	2 cut(s)	85, 528
SfuI	TTCGAA	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SnaBI	TACGTA	1 cut(s)	559
Sse9I	AATT	7 cut(s)	71, 128, 163, 250, 402, 413, 589
SsiI	CCGC	4 cut(s)	177, 203, 571, 586
SspMI	CTAG	1 cut(s)	506
StyD4I	CCNGG	2 cut(s)	359, 368
StyI	CCWWGG	1 cut(s)	496
TaiI	ACGT	2 cut(s)	28, 561
TaqI	TCGA	3 cut(s)	221, 237, 255
TasI	AATT	7 cut(s)	71, 128, 163, 250, 402, 413, 589
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TspDTI	ATGAA	3 cut(s)	282, 309, 615
TspGWI	ACGGA	2 cut(s)	521, 600
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	2 cut(s)	116, 344
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.