Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Reverse (-)

6840530 .. 6843911

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG042100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCATTATCGGCGACGGTCTCACCTCCGACCCTCTCTCTCTTCCCTCAATCACACCCACCGCAGCAATCACAGCTTCATCTCCCTCACAATCTCACTCCATTTCTCAAACCCAAACGATTCACTCCCCAATTTCACTGCGCCCAAGCCACTCGACGAAACCCTAATTACCCTCCGGGCGGCGCCGATGGCTTCGTCGACGATCCTCGCAACTGGAGCCGCTCCATAAACTCCGAGATTGACCGGCCCTATGGTTTCGAGGACGACGATGAAGACGAGGAAGACGGAGACGACGATGATGAGGAAGATAGGAGCTTGGATCTGTTAGTGAGGTTTGTTCAGAATGTATTCAAGAAGGTGTCGAAGCGAGCCAGGAGGGCCGTACGATCGGTTCTTCCCGTTGCAATCCCCACCAAGTTGGTGGGGTTTTCCGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTGTTGAAGGCATTTCTTGAGGTCATTTGCACCCTTGGTAGCCTAGTCTTTGTAAGCATCTTACTCATTCGTGGGATCTGGATTGGAGTGGCTTATGTACAAGAAAACCGCAACCATAAAGTCGGCAATTTTGAAGATGAAGGCCGCCCATGGACTGGTGCACAGCCTGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.98

Weight (kDa)

5.74

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	5 cut(s)	62, 180, 220, 574, 610
AclWI	GGATC	3 cut(s)	197, 327, 548
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	384, 564
AfiI	CCNNNNNNNGG	3 cut(s)	179, 438, 620
AgsI	TTSAA	3 cut(s)	352, 472, 599
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	2 cut(s)	76, 315
AluI	AGCT	2 cut(s)	76, 315
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	2 cut(s)	25, 282
Alw44I	GTGCAC	1 cut(s)	624
AlwI	GGATC	3 cut(s)	197, 327, 548
AoxI	GGCC	3 cut(s)	245, 378, 607
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	143, 185
AspS9I	GGNCC	2 cut(s)	246, 378
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	628
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	2 cut(s)	279, 288
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	25, 282
BfaI	CTAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	4 cut(s)	65, 181, 220, 610
BlsI	GCNGC	4 cut(s)	66, 182, 221, 611
Bme1390I	CCNGG	2 cut(s)	177, 373
BmgT120I	GGNCC	2 cut(s)	246, 378
BmiI	GGNNCC	2 cut(s)	184, 218
BmrFI	CCNGG	2 cut(s)	177, 373
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	2 cut(s)	279, 288
BpmI	CTGGAG	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	499, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 438, 620
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	218, 625
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	499, 614
BseLI	CCNNNNNNNGG	3 cut(s)	179, 438, 620
BseNI	ACTGG	2 cut(s)	218, 625
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	3 cut(s)	247, 380, 609
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	176, 244
BsiWI	CGTACG	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	179, 438, 620
BsmAI	GTCTC	2 cut(s)	25, 282
BsmBI	CGTCTC	1 cut(s)	282
BsnI	GGCC	3 cut(s)	247, 380, 609
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	202, 319, 386, 540
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	5 cut(s)	62, 180, 220, 574, 610
BspANI	GGCC	3 cut(s)	247, 380, 609
BspLI	GGNNCC	2 cut(s)	184, 218
BspPI	GGATC	3 cut(s)	197, 327, 548
BspT107I	GGYRCC	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	218, 625
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	499, 614
BssMI	GATC	4 cut(s)	202, 319, 386, 540
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	499, 614
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstAUI	TGTACA	1 cut(s)	562
BstC8I	GCNNGC	3 cut(s)	369, 453, 633
BstDSI	CCRYGG	1 cut(s)	614
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	143, 185
BstKTI	GATC	4 cut(s)	205, 322, 389, 543
BstMAI	GTCTC	2 cut(s)	25, 282
BstMBI	GATC	4 cut(s)	202, 319, 386, 540
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 189, 216, 377, 632
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	175, 371
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	2 cut(s)	279, 288
BstX2I	RGATCY	2 cut(s)	319, 540
BstXI	CCANNNNNNTGG	2 cut(s)	418, 421
BstYI	RGATCY	2 cut(s)	319, 540
BsuRI	GGCC	3 cut(s)	247, 380, 609
BtgI	CCRYGG	1 cut(s)	614
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	3 cut(s)	369, 453, 633
CfoI	GCGC	2 cut(s)	143, 185
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	246, 378
Csp6I	GTAC	2 cut(s)	383, 563
CviAII	CATG	1 cut(s)	615
CviQI	GTAC	2 cut(s)	383, 563
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	4 cut(s)	204, 321, 388, 542
DpnII	GATC	4 cut(s)	202, 319, 386, 540
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	2 cut(s)	499, 614
Eco31I	GGTCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	499, 614
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
ErhI	CCWWGG	2 cut(s)	499, 614
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	1 cut(s)	618
FaiI	YATR	5 cut(s)	227, 252, 561, 582, 616
FatI	CATG	1 cut(s)	614
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	65, 181, 220, 610
Fsp4HI	GCNGC	4 cut(s)	65, 181, 220, 610
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	2 cut(s)	142, 184
GluI	GCNGC	4 cut(s)	65, 181, 220, 610
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	247, 380, 609
HapII	CCGG	2 cut(s)	176, 244
HhaI	GCGC	2 cut(s)	143, 185
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	618
Hin6I	GCGC	2 cut(s)	141, 183
HinP1I	GCGC	2 cut(s)	141, 183
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	176, 244
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	2 cut(s)	199, 626
Hpy188I	TCNGA	3 cut(s)	30, 235, 342
Hpy188III	TCNNGA	3 cut(s)	352, 482, 544
Hpy8I	GTNNAC	2 cut(s)	199, 626
Hpy99I	CGWCG	6 cut(s)	19, 159, 200, 203, 269, 296
HpyAV	CCTTC	3 cut(s)	349, 466, 599
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	4 cut(s)	404, 495, 626, 635
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 189, 216, 377, 632
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	618
HspAI	GCGC	2 cut(s)	141, 183
KasI	GGCGCC	1 cut(s)	182
Kzo9I	GATC	4 cut(s)	202, 319, 386, 540
LmnI	GCTCC	3 cut(s)	216, 227, 312
LpnPI	CCDG	8 cut(s)	189, 199, 257, 358, 385, 437, 529, 606
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	509
MalI	GATC	4 cut(s)	204, 321, 388, 542
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	4 cut(s)	202, 319, 386, 540
MboII	GAAGA	6 cut(s)	34, 284, 293, 317, 386, 611
MflI	RGATCY	2 cut(s)	319, 540
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	3 cut(s)	131, 166, 592
Mly113I	GGCGCC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	1 cut(s)	435
MspI	CCGG	2 cut(s)	176, 244
MspR9I	CCNGG	2 cut(s)	177, 373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	5 cut(s)	73, 189, 216, 377, 632
NarI	GGCGCC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	177
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	4 cut(s)	202, 319, 386, 540
NlaIII	CATG	1 cut(s)	618
NlaIV	GGNNCC	2 cut(s)	184, 218
PcsI	WCGNNNNNNNCGW	3 cut(s)	264, 273, 291
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	120
Pfl23II	CGTACG	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	4 cut(s)	66, 182, 221, 611
Ple19I	CGATCG	1 cut(s)	389
PluTI	GGCGCC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspLI	CGTACG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	184, 218
PspPI	GGNCC	2 cut(s)	246, 378
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PsuI	RGATCY	2 cut(s)	319, 540
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	384, 564
RsaNI	GTAC	2 cut(s)	383, 563
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	4 cut(s)	65, 181, 220, 610
Sau3AI	GATC	4 cut(s)	202, 319, 386, 540
Sau96I	GGNCC	2 cut(s)	246, 378
ScrFI	CCNGG	2 cut(s)	177, 373
SduI	GDGCHC	1 cut(s)	628
SetI	ASST	7 cut(s)	28, 78, 317, 335, 360, 489, 641
SfaNI	GCATC	1 cut(s)	531
SfoI	GGCGCC	1 cut(s)	184
SgrDI	CGTCGACG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	3 cut(s)	131, 166, 592
SsiI	CCGC	5 cut(s)	62, 180, 220, 574, 610
SspDI	GGCGCC	1 cut(s)	182
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	2 cut(s)	175, 371
StyI	CCWWGG	2 cut(s)	499, 614
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	4 cut(s)	154, 198, 258, 362
TasI	AATT	3 cut(s)	131, 166, 592
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	3 cut(s)	183, 222, 612
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	68, 285, 618
TspGWI	ACGGA	2 cut(s)	300, 421
TspRI	CASTG	1 cut(s)	143
Van91I	CCANNNNNTGG	1 cut(s)	620
VneI	GTGCAC	1 cut(s)	624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.