Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Reverse (-)

3659890 .. 3663409

Gene Structure 3520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG035800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCCATTATCGGCGACGGTCTCACCTCCGACCCTCTCTCTCTTCCCTCAATCACAACCACCACAGCAATCACAGCTTCATCTCCCTCACATTCTCACTCCATTTCTCAAACCCAAACGATTCACTCCCCAATTTCACTGCGCCAAAGCCACTCGACGAAACCCTAATTACCCTCCGGGCGACGCCGATAGCTTCGTCGACGATCCTCGCAATTGGAGCCGCTCCATAAACTCCGAGATTGACCGGCCTTATGGTTTTGAGGACAATGATGAAGACGATGAAGACGGGGACGACGATGATGAAGAAGATAGGAGCTTGGATCTGTTAGTGAGGTTTGTTCAGAATGTATTTAAGAAGGTGTCGAAGCGAGCCAGGAGGGCCGTCCGATCGGTTCTTCCCGTTGCAATCCCCACCAAGTTGGTAAACATTCATTGTATGCTTGTTAATCAGAATTTTTTTTTTTCGGAAAAGCTCGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.37

Weight (kDa)

5.78

Isoelectric Point (pI)

74.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	197, 327
AcsI	RAATTY	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	183
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	4 cut(s)	76, 192, 315, 472
AluI	AGCT	4 cut(s)	76, 192, 315, 472
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	2 cut(s)	197, 327
AoxI	GGCC	2 cut(s)	245, 378
ApoI	RAATTY	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	279, 288
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	2 cut(s)	177, 373
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	177, 373
BpiI	GAAGAC	2 cut(s)	279, 288
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	25
Bse118I	RCCGGY	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	373
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	247, 380
BsiEI	CGRYCG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	176, 244
BslFI	GGGAC	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	2 cut(s)	247, 380
Bso31I	GGTCTC	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	202, 319, 386
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	2 cut(s)	247, 380
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	197, 327
BspTNI	GGTCTC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	243
BssAI	RCCGGY	1 cut(s)	243
BssMI	GATC	3 cut(s)	202, 319, 386
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	3 cut(s)	205, 322, 389
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	202, 319, 386
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 216, 377
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	175, 371
BstV2I	GAAGAC	2 cut(s)	279, 288
BstX2I	RGATCY	1 cut(s)	319
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	247, 380
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	191
CviJI	RGCY	9 cut(s)	76, 149, 192, 219, 247, 315, 371, 380, 472
CviKI_1	RGCY	9 cut(s)	76, 149, 192, 219, 247, 315, 371, 380, 472
DpnI	GATC	3 cut(s)	204, 321, 388
DpnII	GATC	3 cut(s)	202, 319, 386
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	371
FaiI	YATR	3 cut(s)	227, 252, 437
FaqI	GGGAC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	220
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	1 cut(s)	220
HaeIII	GGCC	2 cut(s)	247, 380
HapII	CCGG	2 cut(s)	176, 244
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	176, 244
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	2 cut(s)	199, 424
Hpy188I	TCNGA	7 cut(s)	30, 235, 342, 386, 450, 466, 476
Hpy8I	GTNNAC	2 cut(s)	199, 424
Hpy99I	CGWCG	6 cut(s)	19, 159, 185, 200, 203, 296
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 216, 377
Hsp92I	GRCGYC	1 cut(s)	183
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	3 cut(s)	202, 319, 386
LmnI	GCTCC	3 cut(s)	216, 227, 312
LpnPI	CCDG	4 cut(s)	189, 257, 358, 385
MalI	GATC	3 cut(s)	204, 321, 388
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	3 cut(s)	202, 319, 386
MboII	GAAGA	6 cut(s)	34, 284, 293, 314, 317, 386
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	4 cut(s)	131, 166, 211, 451
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	9 cut(s)	36, 44, 57, 96, 183, 216, 253, 324, 369
MseI	TTAA	2 cut(s)	351, 444
MspI	CCGG	2 cut(s)	176, 244
MspR9I	CCNGG	2 cut(s)	177, 373
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	3 cut(s)	73, 216, 377
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	202, 319, 386
NlaIV	GGNNCC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	221
Ple19I	CGATCG	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	378
PsuI	RGATCY	1 cut(s)	319
PvuI	CGATCG	1 cut(s)	389
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	351, 444
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	3 cut(s)	202, 319, 386
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	177, 373
SetI	ASST	7 cut(s)	28, 78, 194, 317, 335, 360, 474
SgrDI	CGTCGACG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	131, 166, 211, 451
SsiI	CCGC	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	175, 371
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	154, 198, 362
TasI	AATT	4 cut(s)	131, 166, 211, 451
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	2 cut(s)	351, 444
Tru9I	TTAA	2 cut(s)	351, 444
TscAI	CASTG	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	68, 285, 294, 315, 419
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.