Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Reverse (-)

6803322 .. 6826845

Gene Structure 23524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG041800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCACGTCGATAGGAGCTGGTTGGTGAGGTCTGTCTTGCATCTGTTGGTGAGCGTTGTTCAGAATGTATCTGAGAAGGTGTCGGAGCGAGCTAAGAGGGCCTTACGATCGGTTCTCCCAGTTCCAATCCCCACCGAGTTGGTGGGGTTTTATGTTGATGGGGTTCTAATGCTGGCATTTTTGTGGATGTTGAAGGCATCTCTTGAGGTCATTTGCACCCTTGGTAGCCTAGTCTTTGTAAGCATCTTACTCATTCAGGGGATCTGGATTGGAGTGGCTTATGTACAAGAAAACCGCAACCATAAAGGCGGCATTTTTGAAGATGAAGGCGGCCCGTCGAAGCGAGCTAGGAGGGACGTACGATCGGTTCTCCCAGTTGCAATCCCCAGCAAGTTGGTGAACATTCAATTAGATGTCATTTGCACTCTTGGTAGCCTAGTCTTTGTAAGCATCTTACTCATTCATGGGATCTGGATTGGAGTGGCTTATGTACAAGAAAACTGCAACCATAAAGGCGGCAATGTTGAAGATGAAGGCCGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

20.06

Weight (kDa)

8.88

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	295, 309, 330, 516, 538
AclWI	GGATC	2 cut(s)	269, 476
AfaI	GTAC	3 cut(s)	285, 360, 492
AgsI	TTSAA	4 cut(s)	193, 320, 407, 527
AjiI	CACGTC	1 cut(s)	7
AluBI	AGCT	3 cut(s)	18, 92, 347
AluI	AGCT	3 cut(s)	18, 92, 347
AlwI	GGATC	2 cut(s)	269, 476
AoxI	GGCC	3 cut(s)	99, 331, 535
AspS9I	GGNCC	2 cut(s)	99, 332
AsuHPI	GGTGA	3 cut(s)	37, 61, 409
BccI	CCATC	1 cut(s)	152
BceAI	ACGGC	1 cut(s)	525
BfaI	CTAG	3 cut(s)	230, 348, 437
BisI	GCNGC	4 cut(s)	310, 331, 517, 538
BlsI	GCNGC	4 cut(s)	311, 332, 518, 539
BmgBI	CACGTC	1 cut(s)	7
BmgT120I	GGNCC	2 cut(s)	99, 332
BmrI	ACTGGG	2 cut(s)	113, 368
BmsI	GCATC	4 cut(s)	49, 206, 252, 459
BmuI	ACTGGG	2 cut(s)	113, 368
BpuEI	CTTGAG	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	220
Bse1I	ACTGG	2 cut(s)	119, 374
Bse3DI	GCAATG	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	192
BseMI	GCAATG	1 cut(s)	526
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	119, 374
BseYI	CCCAGC	1 cut(s)	386
Bsh1285I	CGRYCG	2 cut(s)	110, 365
BshFI	GGCC	3 cut(s)	101, 333, 537
BsiEI	CGRYCG	2 cut(s)	110, 365
BsiWI	CGTACG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	368
BsnI	GGCC	3 cut(s)	101, 333, 537
Bsp1407I	TGTACA	2 cut(s)	283, 490
Bsp143I	GATC	4 cut(s)	107, 261, 362, 468
BspACI	CCGC	5 cut(s)	295, 309, 330, 516, 538
BspANI	GGCC	3 cut(s)	101, 333, 537
BspCNI	CTCAG	1 cut(s)	64
BspPI	GGATC	2 cut(s)	269, 476
BsrDI	GCAATG	1 cut(s)	526
BsrGI	TGTACA	2 cut(s)	283, 490
BsrI	ACTGG	2 cut(s)	119, 374
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	4 cut(s)	107, 261, 362, 468
BssT1I	CCWWGG	1 cut(s)	220
BstAUI	TGTACA	2 cut(s)	283, 490
BstC8I	GCNNGC	3 cut(s)	90, 174, 345
BstDEI	CTNAG	2 cut(s)	72, 93
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	4 cut(s)	110, 264, 365, 471
BstMBI	GATC	4 cut(s)	107, 261, 362, 468
BstMCI	CGRYCG	2 cut(s)	110, 365
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstX2I	RGATCY	2 cut(s)	261, 468
BstXI	CCANNNNNNTGG	2 cut(s)	139, 394
BstYI	RGATCY	2 cut(s)	261, 468
BsuRI	GGCC	3 cut(s)	101, 333, 537
BtrI	CACGTC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	90, 174, 345
Cfr13I	GGNCC	2 cut(s)	99, 332
Csp6I	GTAC	3 cut(s)	284, 359, 491
CviAII	CATG	1 cut(s)	464
CviQI	GTAC	3 cut(s)	284, 359, 491
DdeI	CTNAG	2 cut(s)	72, 93
DpnI	GATC	4 cut(s)	109, 263, 364, 470
DpnII	GATC	4 cut(s)	107, 261, 362, 468
Eco130I	CCWWGG	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	1 cut(s)	467
FaiI	YATR	6 cut(s)	153, 282, 303, 465, 489, 510
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	1 cut(s)	463
Fnu4HI	GCNGC	4 cut(s)	310, 331, 517, 538
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	4 cut(s)	310, 331, 517, 538
FspBI	CTAG	3 cut(s)	230, 348, 437
GluI	GCNGC	4 cut(s)	310, 331, 517, 538
GsaI	CCCAGC	1 cut(s)	390
HaeIII	GGCC	3 cut(s)	101, 333, 537
Hin1II	CATG	1 cut(s)	467
HphI	GGTGA	3 cut(s)	37, 61, 409
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	3 cut(s)	63, 73, 85
Hpy188III	TCNNGA	3 cut(s)	203, 265, 472
Hpy8I	GTNNAC	1 cut(s)	400
Hpy99I	CGWCG	2 cut(s)	11, 340
HpyAV	CCTTC	4 cut(s)	70, 187, 320, 527
HpyCH4IV	ACGT	2 cut(s)	6, 357
HpyCH4V	TGCA	6 cut(s)	4, 40, 216, 380, 423, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	72, 93
HpySE526I	ACGT	2 cut(s)	6, 357
Hsp92II	CATG	1 cut(s)	467
Kzo9I	GATC	4 cut(s)	107, 261, 362, 468
LmnI	GCTCC	2 cut(s)	15, 85
LpnPI	CCDG	8 cut(s)	4, 132, 158, 242, 250, 387, 400, 457
LweI	GCATC	4 cut(s)	49, 206, 252, 459
MaeI	CTAG	3 cut(s)	230, 348, 437
MaeII	ACGT	2 cut(s)	6, 357
MalI	GATC	4 cut(s)	109, 263, 364, 470
MboI	GATC	4 cut(s)	107, 261, 362, 468
MboII	GAAGA	2 cut(s)	332, 539
MflI	RGATCY	2 cut(s)	261, 468
MluCI	AATT	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	4 cut(s)	21, 90, 199, 345
MslI	CAYNNNNRTG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	4 cut(s)	107, 261, 362, 468
NlaIII	CATG	1 cut(s)	467
Pfl23II	CGTACG	1 cut(s)	358
PkrI	GCNGC	4 cut(s)	311, 332, 518, 539
Ple19I	CGATCG	2 cut(s)	110, 365
PspFI	CCCAGC	1 cut(s)	386
PspLI	CGTACG	1 cut(s)	358
PspPI	GGNCC	2 cut(s)	99, 332
PsrI	GAACNNNNNNTAC	2 cut(s)	351, 383
PsuI	RGATCY	2 cut(s)	261, 468
PvuI	CGATCG	2 cut(s)	110, 365
RsaI	GTAC	3 cut(s)	285, 360, 492
RsaNI	GTAC	3 cut(s)	284, 359, 491
RseI	CAYNNNNRTG	1 cut(s)	181
SatI	GCNGC	4 cut(s)	310, 331, 517, 538
Sau3AI	GATC	4 cut(s)	107, 261, 362, 468
Sau96I	GGNCC	2 cut(s)	99, 332
SetI	ASST	8 cut(s)	9, 20, 32, 81, 94, 210, 349, 360
SfaNI	GCATC	4 cut(s)	49, 206, 252, 459
SmiMI	CAYNNNNRTG	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	407
SsiI	CCGC	5 cut(s)	295, 309, 330, 516, 538
SspMI	CTAG	3 cut(s)	230, 348, 437
StyI	CCWWGG	1 cut(s)	220
TaiI	ACGT	2 cut(s)	9, 360
TaqI	TCGA	2 cut(s)	9, 338
TasI	AATT	1 cut(s)	407
TatI	WGTACW	2 cut(s)	283, 490
TauI	GCSGC	4 cut(s)	312, 333, 519, 540
TspDTI	ATGAA	3 cut(s)	339, 452, 546
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XspI	CTAG	3 cut(s)	230, 348, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.