Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Reverse (-)

3741077 .. 3743724

Gene Structure 2648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG039000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCCATTATCGGCGACGGTCTCACCTCCGACCCTCTCTCTCTTCCCTCAATCACAACCACCACAGCAATCACAGCTTCATCTCCCTCACATTCTCACTCCATTTCTCAAACCCAAACGATTCACTCCCCAATTTCACTGCGCCAAAGCCACTCGACGAAACCCTAATTACCCTCCGGGCGACGCCGATAGCTTCGTCGACGATCCTCGCAATTGGAGCCGCTCCATAAACTCCGAGATTGACCGGCCTTATGGTTTTGAGGACAATGATGAAGACGATGAAGACGGGGACGACGATGATGAAGAAGATAGGAGCTTGGATCTGTTAGTGAGGTTTGTTCAGAATGTATTTAAGAAGGTGTCGAAGCGAGCCAGGAGGGCCGTCCGATCGGTTCTTCCCGTTGCAATCCCCACCAAGTTGGTCATTTGCACCCTTGGTAGCCTAGTCTTTGTAAGCATCTTACTCATTCGTGGGATCTGGATTGGAGTGGCTTATGTACAAGAAAACCGCAACCATAAAGTCAGCAATTTTGAAGATGAAGGCCGCCCGTGGACTGGTGCACAGCCTGTAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

21.66

Weight (kDa)

5.81

Isoelectric Point (pI)

65.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	3 cut(s)	220, 508, 544
AclWI	GGATC	3 cut(s)	197, 327, 482
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	3 cut(s)	76, 192, 315
AluI	AGCT	3 cut(s)	76, 192, 315
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	3 cut(s)	197, 327, 482
AoxI	GGCC	3 cut(s)	245, 378, 541
ApaLI	GTGCAC	1 cut(s)	558
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	562
BbsI	GAAGAC	2 cut(s)	279, 288
Bbv12I	GWGCWC	1 cut(s)	562
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	1 cut(s)	443
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	2 cut(s)	220, 544
BlsI	GCNGC	2 cut(s)	221, 545
Bme1390I	CCNGG	2 cut(s)	177, 373
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	177, 373
BmsI	GCATC	1 cut(s)	465
BpiI	GAAGAC	2 cut(s)	279, 288
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	433, 548
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	433, 548
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseNI	ACTGG	1 cut(s)	559
BseSI	GKGCMC	1 cut(s)	562
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	3 cut(s)	247, 380, 543
BsiEI	CGRYCG	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	176, 244
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	25
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	247, 380, 543
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp1407I	TGTACA	1 cut(s)	496
Bsp143I	GATC	4 cut(s)	202, 319, 386, 474
BspACI	CCGC	3 cut(s)	220, 508, 544
BspANI	GGCC	3 cut(s)	247, 380, 543
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	197, 327, 482
BspTNI	GGTCTC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	559
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	433, 548
BssMI	GATC	4 cut(s)	202, 319, 386, 474
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	548
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	4 cut(s)	205, 322, 389, 477
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	4 cut(s)	202, 319, 386, 474
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 216, 377
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	175, 371
BstSLI	GKGCMC	1 cut(s)	562
BstV2I	GAAGAC	2 cut(s)	279, 288
BstX2I	RGATCY	2 cut(s)	319, 474
BstXI	CCANNNNNNTGG	1 cut(s)	418
BstYI	RGATCY	2 cut(s)	319, 474
BsuRI	GGCC	3 cut(s)	247, 380, 543
BtgI	CCRYGG	1 cut(s)	548
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	143
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	497
CviQI	GTAC	1 cut(s)	497
DpnI	GATC	4 cut(s)	204, 321, 388, 476
DpnII	GATC	4 cut(s)	202, 319, 386, 474
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	433
ErhI	CCWWGG	1 cut(s)	433
FaiI	YATR	4 cut(s)	227, 252, 495, 516
FaqI	GGGAC	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	2 cut(s)	220, 544
Fsp4HI	GCNGC	2 cut(s)	220, 544
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	220, 544
HaeIII	GGCC	3 cut(s)	247, 380, 543
HapII	CCGG	2 cut(s)	176, 244
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	176, 244
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	3 cut(s)	199, 552, 560
Hpy188I	TCNGA	4 cut(s)	30, 235, 342, 386
Hpy188III	TCNNGA	1 cut(s)	478
Hpy8I	GTNNAC	3 cut(s)	199, 552, 560
Hpy99I	CGWCG	6 cut(s)	19, 159, 185, 200, 203, 296
HpyAV	CCTTC	2 cut(s)	349, 533
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	404, 429, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 216, 377
Hsp92I	GRCGYC	1 cut(s)	183
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	202, 319, 386, 474
LmnI	GCTCC	3 cut(s)	216, 227, 312
LpnPI	CCDG	6 cut(s)	189, 257, 358, 385, 463, 540
LweI	GCATC	1 cut(s)	465
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	4 cut(s)	204, 321, 388, 476
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	4 cut(s)	202, 319, 386, 474
MboII	GAAGA	7 cut(s)	34, 284, 293, 314, 317, 386, 545
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	2 cut(s)	319, 474
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	4 cut(s)	131, 166, 211, 526
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	9 cut(s)	36, 44, 57, 96, 183, 216, 253, 324, 369
MseI	TTAA	1 cut(s)	351
MspI	CCGG	2 cut(s)	176, 244
MspR9I	CCNGG	2 cut(s)	177, 373
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	3 cut(s)	73, 216, 377
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	4 cut(s)	202, 319, 386, 474
NlaIV	GGNNCC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	120
PkrI	GCNGC	2 cut(s)	221, 545
Ple19I	CGATCG	1 cut(s)	389
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	319, 474
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	1 cut(s)	351
SatI	GCNGC	2 cut(s)	220, 544
Sau3AI	GATC	4 cut(s)	202, 319, 386, 474
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	177, 373
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	7 cut(s)	28, 78, 194, 317, 335, 360, 575
SfaNI	GCATC	1 cut(s)	465
SgrDI	CGTCGACG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	131, 166, 211, 526
SsiI	CCGC	3 cut(s)	220, 508, 544
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	175, 371
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	3 cut(s)	154, 198, 362
TasI	AATT	4 cut(s)	131, 166, 211, 526
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	2 cut(s)	222, 546
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	1 cut(s)	143
TspDTI	ATGAA	5 cut(s)	68, 285, 294, 315, 552
TspRI	CASTG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	558
XmiI	GTMKAC	1 cut(s)	198
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.