Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Forward (+)

18294338 .. 18296983

Gene Structure 2646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1111500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCCGTTATCGGCGACTCTCTCTTCCCCCTCACTCTCTTATTTCCCCCAAGCACACCACCAACAACAACTCCATCTCCCTCACAATCTCAATCCATACCTCAAACCCAAAACACTGACACTTCAATTTCAATGCCCCCAAGCCTCCAGACGATCCCCAAATTACCCTCAGGGCGGCAGTGCCGATGGTCTCGCCGACGACCCCCGCAATTGGGGCCGTTCGATCAACTCCGACGTCGATAGGCGCTACGATTTCGAAGACGACGATGACGACGACGAAGATGACGAGGACGATGAAGAAGAAGACCGGAGTTTGGATTTGTTGGTGAGATTTGTTCAGAATGTGTTCAAAAAGGTGTCCAGGCGAGCCAGGAGGGCCCTCCGATCGGTTCTCCCCGTCTCAATTCCCACCAAGTTGGTGGGATTTTCTGTTAATGGAGTGCTAATGCTAGCATTCTTGTGGGTCTTGAAGGCATTTCTTGAGGTAATTATATTTTTGTGTATTTTTATTTTTGTGTATACAAACTTCCATCTATTTGGTTATCATTATGCTCCTATTGGTTTTATTTTCCATATGAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.43

Weight (kDa)

5.58

Isoelectric Point (pI)

60.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	237
AccI	GTMKAC	1 cut(s)	518
AciI	CCGC	2 cut(s)	174, 205
AclWI	GGATC	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	234
AfiI	CCNNNNNNNGG	5 cut(s)	173, 210, 211, 313, 385
AgsI	TTSAA	4 cut(s)	125, 131, 349, 469
AjnI	CCWGG	2 cut(s)	359, 368
Alw26I	GTCTC	2 cut(s)	194, 403
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	214, 375
ApaI	GGGCCC	1 cut(s)	379
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	3 cut(s)	214, 375, 376
AsuHPI	GGTGA	1 cut(s)	337
AsuII	TTCGAA	1 cut(s)	255
AsuNHI	GCTAGC	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	379
BarI	GAAGNNNNNNTAC	2 cut(s)	509, 541
BbsI	GAAGAC	2 cut(s)	264, 309
BccI	CCATC	3 cut(s)	81, 179, 537
BceAI	ACGGC	1 cut(s)	201
BciT130I	CCWGG	2 cut(s)	361, 370
BcoDI	GTCTC	2 cut(s)	194, 403
BfaI	CTAG	1 cut(s)	449
BfoI	RGCGCY	1 cut(s)	247
BglI	GCCNNNNNGGC	1 cut(s)	374
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	361, 370
BmgT120I	GGNCC	3 cut(s)	214, 375, 376
BmiI	GGNNCC	2 cut(s)	215, 377
BmrFI	CCNGG	2 cut(s)	361, 370
BmtI	GCTAGC	1 cut(s)	452
BpiI	GAAGAC	2 cut(s)	264, 309
BpmI	CTGGAG	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	306
BsaXI	ACNNNNNCTCC	4 cut(s)	54, 60, 84, 90
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 210, 211, 313, 385
Bse21I	CCTNAGG	1 cut(s)	168
BseBI	CCWGG	2 cut(s)	361, 370
BseLI	CCNNNNNNNGG	5 cut(s)	173, 210, 211, 313, 385
BseMII	CTCAG	1 cut(s)	182
BseSI	GKGCMC	1 cut(s)	379
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	216, 377
BsiEI	CGRYCG	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	5 cut(s)	173, 210, 211, 313, 385
BsmAI	GTCTC	2 cut(s)	194, 403
BsmBI	CGTCTC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	216, 377
Bso31I	GGTCTC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	255
Bsp120I	GGGCCC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	152, 222, 383
BspACI	CCGC	2 cut(s)	174, 205
BspANI	GGCC	2 cut(s)	216, 377
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	215, 377
BspOI	GCTAGC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	147
BspT104I	TTCGAA	1 cut(s)	255
BspTNI	GGTCTC	1 cut(s)	194
BssMI	GATC	3 cut(s)	152, 222, 383
BssNAI	GTATAC	1 cut(s)	519
BssNI	GRCGYC	1 cut(s)	234
Bst1107I	GTATAC	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	361, 370
Bst6I	CTCTTC	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	366, 450
BstDEI	CTNAG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	3 cut(s)	155, 225, 386
BstMAI	GTCTC	2 cut(s)	194, 403
BstMBI	GATC	3 cut(s)	152, 222, 383
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	2 cut(s)	213, 374
BstNI	CCWGG	2 cut(s)	361, 370
BstSCI	CCNGG	2 cut(s)	359, 368
BstSLI	GKGCMC	1 cut(s)	379
BstV2I	GAAGAC	2 cut(s)	264, 309
BstXI	CCANNNNNNTGG	3 cut(s)	415, 418, 536
BstZ17I	GTATAC	1 cut(s)	519
Bsu36I	CCTNAGG	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	216, 377
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	2 cut(s)	113, 184
Cac8I	GCNNGC	2 cut(s)	366, 450
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	3 cut(s)	214, 375, 376
CviJI	RGCY	4 cut(s)	143, 216, 368, 377
CviKI_1	RGCY	4 cut(s)	143, 216, 368, 377
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	3 cut(s)	154, 224, 385
DpnII	GATC	3 cut(s)	152, 222, 383
Eam1104I	CTCTTC	1 cut(s)	28
EarI	CTCTTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	379
Eco31I	GGTCTC	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	168
EcoO109I	RGGNCCY	2 cut(s)	375, 376
EcoRII	CCWGG	2 cut(s)	359, 368
EcoT38I	GRGCYC	1 cut(s)	379
Esp3I	CGTCTC	1 cut(s)	403
FaiI	YATR	6 cut(s)	97, 491, 519, 549, 573, 575
FauI	CCCGC	1 cut(s)	212
FauNDI	CATATG	1 cut(s)	573
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	449
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	175
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	2 cut(s)	216, 377
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	234
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	3 cut(s)	232, 339, 383
Hpy188III	TCNNGA	3 cut(s)	147, 466, 479
Hpy8I	GTNNAC	1 cut(s)	519
Hpy99I	CGWCG	6 cut(s)	200, 236, 239, 266, 275, 278
HpyAV	CCTTC	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	234
HpyF10VI	GCNNNNNNNGC	2 cut(s)	213, 374
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	234
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	152, 222, 383
LmnI	GCTCC	1 cut(s)	556
LpnPI	CCDG	7 cut(s)	155, 160, 320, 346, 355, 373, 382
MaeI	CTAG	1 cut(s)	449
MaeII	ACGT	1 cut(s)	234
MalI	GATC	3 cut(s)	154, 224, 385
MboI	GATC	3 cut(s)	152, 222, 383
MboII	GAAGA	6 cut(s)	15, 269, 290, 308, 311, 314
MfeI	CAATTG	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	5 cut(s)	125, 160, 208, 402, 486
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	255
MnlI	CCTC	9 cut(s)	40, 90, 110, 154, 177, 280, 366, 389, 475
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	361, 370
MunI	CAATTG	1 cut(s)	208
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	2 cut(s)	361, 370
MwoI	GCNNNNNNNGC	2 cut(s)	213, 374
NdeI	CATATG	1 cut(s)	573
NdeII	GATC	3 cut(s)	152, 222, 383
NheI	GCTAGC	1 cut(s)	448
NlaIV	GGNNCC	2 cut(s)	215, 377
NspV	TTCGAA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	4 cut(s)	261, 267, 270, 282
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	176
Ple19I	CGATCG	1 cut(s)	386
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp6I	CCWGG	2 cut(s)	359, 368
PspGI	CCWGG	2 cut(s)	359, 368
PspN4I	GGNNCC	2 cut(s)	215, 377
PspOMI	GGGCCC	1 cut(s)	375
PspPI	GGNCC	3 cut(s)	214, 375, 376
PvuI	CGATCG	1 cut(s)	386
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	3 cut(s)	152, 222, 383
Sau96I	GGNCC	3 cut(s)	214, 375, 376
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	2 cut(s)	361, 370
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	4 cut(s)	102, 237, 357, 486
SfuI	TTCGAA	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	5 cut(s)	125, 160, 208, 402, 486
SsiI	CCGC	2 cut(s)	174, 205
SspMI	CTAG	1 cut(s)	449
StyD4I	CCNGG	2 cut(s)	359, 368
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	221, 237, 255
TasI	AATT	5 cut(s)	125, 160, 208, 402, 486
TauI	GCSGC	1 cut(s)	177
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	2 cut(s)	120, 184
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	2 cut(s)	120, 184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	1 cut(s)	449
ZraI	GACGTC	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.