Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Forward (+)

63894067 .. 63896988

Gene Structure 2922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00213430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGCCGTTATCGGCGACGGTCTCACCTCCGACCCTCTCACTCTTCCCTCAATCACAACCACCACAGCAATCACAGCTTCATCTCCCTCACAATCTCACTCCATTTCTCAAACCCAAACGATTCACTCCCCAATTTCACTGCGCCAAAGCCACTCGACGAAACCCTAATTACCCTCCGGGCGGCGCCGATAGCTTCGTCGACGATCCTCGCAACTGGAGCCGCTCCATAAACTCCGAGATTGACCGGCCTTATGGTTTTGAGGACGACGATGAAGACGATGAAGACGGAGACGACGATGATGAGGAAGATAGGAGCTTGGATCTGTTAGTGAGGTTTGTTCAGAACGTATTTAAGAAGGTGTCGAAGCGAGCCAGGAGGGCCGTACGATCGGTTCTTCCCGTTGCAATCCCCACCAAGTTGGTGGGGTTTTCTGTTAATGGGGTGCTAATGCTGGCGTTTTTGTGGGTGTTGAAGGCATTTCTTGAGATTGTGGGGATGTTTAGGCTCTCAGGTCATCGGTATGAAGTGAGGAGAGGTGCTAGTTTTAGTGCTCAATTTGCAAAGACTGTTAGTAACTCAAAATGGGTGTTTTTGATTTACACTTCGCTGCGGCGTAGTAGTGTCACGGTCAATCATGTATCTGACAAGATTCTGACTGAGTTTCTGACAAGAATGTTTGTTGATGTTCTAATTGAGCGCTTCCACTTGTGTGGTATACCTGACAAAGGATTATTAAGTAACACAGCAGTTACAAGTCTTATTTCAGTTGTTTCAGTCCTTTGCACCCTTGGTAGCCTAGTCTTTGTAAGCATCTTACTCATTCGTGGGATCTGGATTGGAGTGGCTTATGTACAAGAAAACCGCAACCATAAAGTCGGCAATTTTGAAGATGAAGGCCGCCCGTGGACTGGTGCACAGCCTGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

309

Amino Acids

34.78

Weight (kDa)

8.74

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	222
AccI	GTMKAC	2 cut(s)	198, 715
AciI	CCGC	5 cut(s)	180, 220, 610, 862, 898
AclWI	GGATC	3 cut(s)	197, 327, 836
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	2 cut(s)	384, 852
AfeI	AGCGCT	1 cut(s)	698
AfiI	CCNNNNNNNGG	3 cut(s)	179, 725, 908
AgsI	TTSAA	2 cut(s)	472, 887
AjnI	CCWGG	1 cut(s)	371
AleI	CACNNNNGTG	1 cut(s)	708
AluBI	AGCT	3 cut(s)	76, 192, 315
AluI	AGCT	3 cut(s)	76, 192, 315
Alw21I	GWGCWC	2 cut(s)	553, 916
Alw26I	GTCTC	2 cut(s)	25, 282
Alw44I	GTGCAC	1 cut(s)	912
AlwI	GGATC	3 cut(s)	197, 327, 836
Aor51HI	AGCGCT	1 cut(s)	698
AoxI	GGCC	3 cut(s)	245, 378, 895
ApaLI	GTGCAC	1 cut(s)	912
ApeKI	GCWGC	1 cut(s)	607
AspLEI	GCGC	3 cut(s)	143, 185, 699
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	916
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	2 cut(s)	279, 288
Bbv12I	GWGCWC	2 cut(s)	553, 916
BbvI	GCAGC	1 cut(s)	594
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	25, 282
BfaI	CTAG	2 cut(s)	540, 797
BfoI	RGCGCY	2 cut(s)	186, 700
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	5 cut(s)	181, 220, 608, 611, 898
BlsI	GCNGC	5 cut(s)	182, 221, 609, 612, 899
Bme1390I	CCNGG	2 cut(s)	177, 373
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	184, 218
BmrFI	CCNGG	2 cut(s)	177, 373
BmsI	GCATC	1 cut(s)	819
BpiI	GAAGAC	2 cut(s)	279, 288
BpmI	CTGGAG	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	787, 902
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 725, 908
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	2 cut(s)	218, 913
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	787, 902
BseGI	GGATG	1 cut(s)	501
BseLI	CCNNNNNNNGG	3 cut(s)	179, 725, 908
BseMII	CTCAG	2 cut(s)	522, 648
BseNI	ACTGG	2 cut(s)	218, 913
BseRI	GAGGAG	1 cut(s)	544
BseSI	GKGCMC	1 cut(s)	916
BseXI	GCAGC	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	3 cut(s)	247, 380, 897
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	389
BsiHKAI	GWGCWC	2 cut(s)	553, 916
BsiSI	CCGG	2 cut(s)	176, 244
BsiWI	CGTACG	1 cut(s)	382
BslI	CCNNNNNNNGG	3 cut(s)	179, 725, 908
BsmAI	GTCTC	2 cut(s)	25, 282
BsmBI	CGTCTC	1 cut(s)	282
BsnI	GGCC	3 cut(s)	247, 380, 897
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	2 cut(s)	553, 916
Bsp1407I	TGTACA	1 cut(s)	850
Bsp143I	GATC	4 cut(s)	202, 319, 386, 828
BspACI	CCGC	5 cut(s)	180, 220, 610, 862, 898
BspANI	GGCC	3 cut(s)	247, 380, 897
BspCNI	CTCAG	2 cut(s)	521, 649
BspLI	GGNNCC	2 cut(s)	184, 218
BspPI	GGATC	3 cut(s)	197, 327, 836
BspT107I	GGYRCC	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	25
BsrBI	CCGCTC	1 cut(s)	222
BsrFI	RCCGGY	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	850
BsrI	ACTGG	2 cut(s)	218, 913
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	787, 902
BssMI	GATC	4 cut(s)	202, 319, 386, 828
BssNAI	GTATAC	1 cut(s)	716
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	787
Bst1107I	GTATAC	1 cut(s)	716
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	3 cut(s)	19, 568, 628
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	183
BstAPI	GCANNNNNTGC	1 cut(s)	920
BstAUI	TGTACA	1 cut(s)	850
BstC8I	GCNNGC	3 cut(s)	369, 453, 921
BstDEI	CTNAG	2 cut(s)	508, 657
BstDSI	CCRYGG	1 cut(s)	902
BstENI	CCTNNNNNAGG	1 cut(s)	723
BstF5I	GGATG	1 cut(s)	501
BstH2I	RGCGCY	2 cut(s)	186, 700
BstHHI	GCGC	3 cut(s)	143, 185, 699
BstKTI	GATC	4 cut(s)	205, 322, 389, 831
BstMAI	GTCTC	2 cut(s)	25, 282
BstMBI	GATC	4 cut(s)	202, 319, 386, 828
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	6 cut(s)	73, 189, 216, 377, 557, 920
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	2 cut(s)	175, 371
BstSLI	GKGCMC	1 cut(s)	916
BstV1I	GCAGC	1 cut(s)	594
BstV2I	GAAGAC	2 cut(s)	279, 288
BstX2I	RGATCY	2 cut(s)	319, 828
BstXI	CCANNNNNNTGG	3 cut(s)	418, 421, 710
BstYI	RGATCY	2 cut(s)	319, 828
BstZ17I	GTATAC	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	247, 380, 897
BtgI	CCRYGG	1 cut(s)	902
BtsCI	GGATG	1 cut(s)	501
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	3 cut(s)	369, 453, 921
CfoI	GCGC	3 cut(s)	143, 185, 699
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	378
Csp6I	GTAC	2 cut(s)	383, 851
CviAII	CATG	1 cut(s)	635
CviQI	GTAC	2 cut(s)	383, 851
DdeI	CTNAG	2 cut(s)	508, 657
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	4 cut(s)	204, 321, 388, 830
DpnII	GATC	4 cut(s)	202, 319, 386, 828
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	787
Eco31I	GGTCTC	1 cut(s)	25
Eco47III	AGCGCT	1 cut(s)	698
EcoNI	CCTNNNNNAGG	1 cut(s)	723
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	787
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	787
Esp3I	CGTCTC	1 cut(s)	282
FaeI	CATG	1 cut(s)	638
FaiI	YATR	7 cut(s)	227, 252, 522, 636, 716, 849, 870
FatI	CATG	1 cut(s)	634
FblI	GTMKAC	2 cut(s)	198, 715
Fnu4HI	GCNGC	5 cut(s)	181, 220, 608, 611, 898
FokI	GGATG	1 cut(s)	508
Fsp4HI	GCNGC	5 cut(s)	181, 220, 608, 611, 898
FspBI	CTAG	2 cut(s)	540, 797
GlaI	GCGC	3 cut(s)	142, 184, 698
GluI	GCNGC	5 cut(s)	181, 220, 608, 611, 898
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	2 cut(s)	186, 700
HaeIII	GGCC	3 cut(s)	247, 380, 897
HapII	CCGG	2 cut(s)	176, 244
HhaI	GCGC	3 cut(s)	143, 185, 699
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	638
Hin6I	GCGC	3 cut(s)	141, 183, 697
HinP1I	GCGC	3 cut(s)	141, 183, 697
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	120, 649
HpaII	CCGG	2 cut(s)	176, 244
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	4 cut(s)	199, 716, 906, 914
Hpy188I	TCNGA	6 cut(s)	30, 235, 342, 643, 654, 666
Hpy188III	TCNNGA	2 cut(s)	482, 832
Hpy8I	GTNNAC	4 cut(s)	199, 716, 906, 914
Hpy99I	CGWCG	6 cut(s)	19, 159, 200, 203, 269, 296
HpyAV	CCTTC	3 cut(s)	349, 466, 887
HpyCH4III	ACNGT	3 cut(s)	19, 568, 628
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	5 cut(s)	404, 560, 783, 914, 923
HpyF10VI	GCNNNNNNNGC	6 cut(s)	73, 189, 216, 377, 557, 920
HpyF3I	CTNAG	2 cut(s)	508, 657
HpySE526I	ACGT	1 cut(s)	345
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	638
HspAI	GCGC	3 cut(s)	141, 183, 697
KasI	GGCGCC	1 cut(s)	182
Kzo9I	GATC	4 cut(s)	202, 319, 386, 828
LmnI	GCTCC	3 cut(s)	216, 227, 312
Lsp1109I	GCAGC	1 cut(s)	594
LweI	GCATC	1 cut(s)	819
MaeI	CTAG	2 cut(s)	540, 797
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	4 cut(s)	572, 622, 737, 748
MalI	GATC	4 cut(s)	204, 321, 388, 830
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	4 cut(s)	202, 319, 386, 828
MboII	GAAGA	6 cut(s)	34, 284, 293, 317, 386, 899
MflI	RGATCY	2 cut(s)	319, 828
MhlI	GDGCHC	2 cut(s)	553, 916
MluCI	AATT	5 cut(s)	131, 166, 554, 690, 880
Mly113I	GGCGCC	1 cut(s)	183
MmeI	TCCRAC	1 cut(s)	53
MseI	TTAA	3 cut(s)	351, 435, 734
MslI	CAYNNNNRTG	2 cut(s)	519, 708
MspI	CCGG	2 cut(s)	176, 244
MspR9I	CCNGG	2 cut(s)	177, 373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	6 cut(s)	73, 189, 216, 377, 557, 920
NarI	GGCGCC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	4 cut(s)	202, 319, 386, 828
NlaIII	CATG	1 cut(s)	638
NlaIV	GGNNCC	2 cut(s)	184, 218
NmuCI	GTSAC	1 cut(s)	622
OliI	CACNNNNGTG	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 291
PfeI	GAWTC	2 cut(s)	120, 649
Pfl23II	CGTACG	1 cut(s)	382
PkrI	GCNGC	5 cut(s)	182, 221, 609, 612, 899
Ple19I	CGATCG	1 cut(s)	389
PluTI	GGCGCC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspLI	CGTACG	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	184, 218
PspPI	GGNCC	1 cut(s)	378
PsrI	GAACNNNNNNTAC	2 cut(s)	375, 407
PsuI	RGATCY	2 cut(s)	319, 828
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	2 cut(s)	384, 852
RsaNI	GTAC	2 cut(s)	383, 851
RseI	CAYNNNNRTG	2 cut(s)	519, 708
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	351, 435, 734
SatI	GCNGC	5 cut(s)	181, 220, 608, 611, 898
Sau3AI	GATC	4 cut(s)	202, 319, 386, 828
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	177, 373
SduI	GDGCHC	2 cut(s)	553, 916
SfaNI	GCATC	1 cut(s)	819
SfoI	GGCGCC	1 cut(s)	184
SgrDI	CGTCGACG	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	519, 708
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	131, 166, 554, 690, 880
SsiI	CCGC	5 cut(s)	180, 220, 610, 862, 898
SspDI	GGCGCC	1 cut(s)	182
SspMI	CTAG	2 cut(s)	540, 797
StyD4I	CCNGG	2 cut(s)	175, 371
StyI	CCWWGG	1 cut(s)	787
TaaI	ACNGT	3 cut(s)	19, 568, 628
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	3 cut(s)	154, 198, 362
TasI	AATT	5 cut(s)	131, 166, 554, 690, 880
TatI	WGTACW	1 cut(s)	850
TauI	GCSGC	4 cut(s)	183, 222, 613, 900
TfiI	GAWTC	2 cut(s)	120, 649
Tru1I	TTAA	3 cut(s)	351, 435, 734
Tru9I	TTAA	3 cut(s)	351, 435, 734
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	1 cut(s)	607
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	5 cut(s)	68, 285, 294, 537, 906
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	143
VneI	GTGCAC	1 cut(s)	912
XagI	CCTNNNNNAGG	1 cut(s)	723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	2 cut(s)	198, 715
XspI	CTAG	2 cut(s)	540, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.