Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Forward (+)

22024636 .. 22026420

Gene Structure 1785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1106700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCGTTGTCGGCCACTCTCTCTCCTCCCTCTCTCTCTTACTTCCCCCAAACACAACACCACCAACCACAACTCCATCTCCTTCACACTCTCCATCCCCATCTCAAACCCAAAACACTCACCCTTCAATTTCAATCCCCCCAAGCCTCAAGACGATCCCCTAATTACCCTCAGGGCGGCGGTGCCGATAATCTCGCCGACGACCCCCGCAGTTGGGGCCGTTCGATCAATTCCGAAGTCGATCGGCGCTACGATTTTGAAGACGACGACGAAGACGATGAAGATGACGAGGACGACGAAGAAGAAGACCGGAGTTTGGATTTGTTGGTGAGGTTTGTTCAGAATGTGTTCAAAAAGGTGTCCAGGCGTGCGAGGAGGGCCGTCCGATCAGTTCTCCCCGTCTCAATTCCCACCAAGTTGGTGGGATTTTCTGTTAATGGGGTGCTAATGCTAGCATTCTTGTGGGTCTTGAAGGCATTTCTTGAGGTAGTTTGCACCCTTGGAAGTCTGGTGTTCGTAAGCATCTTACTCATTCGTGGGATATGGACTGGAGTAGCCTATTATCAAGATAACCGCAATCAGAAACCCCGCAATTTTGAAGATGACAACCGTCCATGGGCGGGCGCACAGCCCGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

24.28

Weight (kDa)

5.67

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	7 cut(s)	177, 180, 208, 574, 589, 620, 633
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	12
AfiI	CCNNNNNNNGG	6 cut(s)	176, 213, 214, 316, 616, 620
AgsI	TTSAA	6 cut(s)	128, 134, 260, 352, 472, 599
AjnI	CCWGG	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	3 cut(s)	12, 217, 378
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	2 cut(s)	249, 626
AspS9I	GGNCC	2 cut(s)	217, 378
AsuHPI	GGTGA	2 cut(s)	112, 340
AsuNHI	GCTAGC	1 cut(s)	451
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	3 cut(s)	267, 279, 312
BccI	CCATC	3 cut(s)	84, 102, 108
BceAI	ACGGC	2 cut(s)	204, 365
BciT130I	CCWGG	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	406
BfaI	CTAG	1 cut(s)	452
BfoI	RGCGCY	1 cut(s)	250
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	364
BmgT120I	GGNCC	2 cut(s)	217, 378
BmiI	GGNNCC	2 cut(s)	184, 218
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	531
BmtI	GCTAGC	1 cut(s)	455
BoxI	GACNNNNGTC	1 cut(s)	609
BpiI	GAAGAC	3 cut(s)	267, 279, 312
BpmI	CTGGAG	1 cut(s)	570
BpuEI	CTTGAG	2 cut(s)	133, 503
BsaJI	CCNNGG	2 cut(s)	499, 614
BsaWI	WCCGGW	1 cut(s)	309
BsaXI	ACNNNNNCTCC	6 cut(s)	7, 37, 57, 63, 87, 93
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 213, 214, 316, 616, 620
Bse1I	ACTGG	1 cut(s)	553
Bse21I	CCTNAGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	499, 614
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	6 cut(s)	176, 213, 214, 316, 616, 620
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	15, 388
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	14, 219, 380
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	1 cut(s)	310
BslI	CCNNNNNNNGG	6 cut(s)	176, 213, 214, 316, 616, 620
BsmAI	GTCTC	1 cut(s)	406
BsmBI	CGTCTC	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	14, 219, 380
Bsp143I	GATC	4 cut(s)	155, 225, 241, 386
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	7 cut(s)	177, 180, 208, 574, 589, 620, 633
BspANI	GGCC	3 cut(s)	14, 219, 380
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	184, 218
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	553
BssECI	CCNNGG	2 cut(s)	499, 614
BssMI	GATC	4 cut(s)	155, 225, 241, 386
BssT1I	CCWWGG	2 cut(s)	499, 614
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	1 cut(s)	611
BstC8I	GCNNGC	4 cut(s)	369, 453, 622, 633
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	249, 626
BstKTI	GATC	4 cut(s)	158, 228, 244, 389
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	4 cut(s)	155, 225, 241, 386
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 377, 632
BstNI	CCWGG	1 cut(s)	364
BstPAI	GACNNNNGTC	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	362
BstV2I	GAAGAC	3 cut(s)	267, 279, 312
BstXI	CCANNNNNNTGG	2 cut(s)	418, 421
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	14, 219, 380
BtgI	CCRYGG	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	4 cut(s)	369, 453, 622, 633
CfoI	GCGC	2 cut(s)	249, 626
Cfr13I	GGNCC	2 cut(s)	217, 378
CviAII	CATG	1 cut(s)	615
CviJI	RGCY	6 cut(s)	14, 146, 219, 380, 557, 631
CviKI_1	RGCY	6 cut(s)	14, 146, 219, 380, 557, 631
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	157, 227, 243, 388
DpnII	GATC	4 cut(s)	155, 225, 241, 386
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	499, 614
Eco81I	CCTNAGG	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	362
EcoT14I	CCWWGG	2 cut(s)	499, 614
ErhI	CCWWGG	2 cut(s)	499, 614
Esp3I	CGTCTC	1 cut(s)	406
FaeI	CATG	1 cut(s)	618
FaiI	YATR	2 cut(s)	544, 616
FatI	CATG	1 cut(s)	614
FauI	CCCGC	4 cut(s)	215, 596, 613, 640
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	2 cut(s)	248, 625
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	570
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	3 cut(s)	14, 219, 380
HapII	CCGG	1 cut(s)	310
HhaI	GCGC	2 cut(s)	249, 626
Hin1II	CATG	1 cut(s)	618
Hin6I	GCGC	2 cut(s)	247, 624
HinP1I	GCGC	2 cut(s)	247, 624
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	2 cut(s)	112, 340
Hpy188I	TCNGA	4 cut(s)	235, 342, 386, 582
Hpy188III	TCNNGA	4 cut(s)	150, 469, 482, 566
Hpy99I	CGWCG	4 cut(s)	203, 269, 272, 299
HpyAV	CCTTC	3 cut(s)	92, 134, 466
HpyCH4III	ACNGT	1 cut(s)	611
HpyCH4V	TGCA	1 cut(s)	495
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 377, 632
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	618
HspAI	GCGC	2 cut(s)	247, 624
Kzo9I	GATC	4 cut(s)	155, 225, 241, 386
LpnPI	CCDG	6 cut(s)	158, 323, 349, 376, 494, 534
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	452
MalI	GATC	4 cut(s)	157, 227, 243, 388
MboI	GATC	4 cut(s)	155, 225, 241, 386
MboII	GAAGA	7 cut(s)	272, 284, 293, 311, 314, 317, 611
MluCI	AATT	5 cut(s)	128, 163, 229, 405, 592
MnlI	CCTC	9 cut(s)	36, 40, 157, 180, 283, 324, 366, 369, 478
MroXI	GAANNNNTTC	1 cut(s)	347
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	460
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	3 cut(s)	216, 377, 632
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	4 cut(s)	155, 225, 241, 386
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	1 cut(s)	618
NlaIV	GGNNCC	2 cut(s)	184, 218
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 294
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	347
PkrI	GCNGC	1 cut(s)	179
Ple19I	CGATCG	1 cut(s)	244
PshAI	GACNNNNGTC	1 cut(s)	609
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	184, 218
PspPI	GGNCC	2 cut(s)	217, 378
PvuI	CGATCG	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	4 cut(s)	155, 225, 241, 386
Sau96I	GGNCC	2 cut(s)	217, 378
ScrFI	CCNGG	1 cut(s)	364
SetI	ASST	4 cut(s)	335, 360, 489, 641
SfaNI	GCATC	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	2 cut(s)	148, 482
SmoI	CTYRAG	2 cut(s)	148, 482
Sse9I	AATT	5 cut(s)	128, 163, 229, 405, 592
SsiI	CCGC	7 cut(s)	177, 180, 208, 574, 589, 620, 633
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	2 cut(s)	499, 614
TaaI	ACNGT	1 cut(s)	611
TaqI	TCGA	2 cut(s)	224, 240
TasI	AATT	5 cut(s)	128, 163, 229, 405, 592
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TspDTI	ATGAA	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.