Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Reverse (-)

6435750 .. 6440460

Gene Structure 4711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAGTAATTTGCAAGACAACTTTGAGGAACTGACGGCTAAGGGCGCCCAAGCCACTCCGGACGTCGATAGGAGCCGGTTGGCGAGGTTTGTCTTGCATCTGTTGGTGAGCGTTGTTCAGAATGTATCTGAGAAGGTGTCGGAGCGAGCTAAGAGGGCCTTACGATCGGTTCTCCCAGTTGCAATCCCCACCGAGTTGGTGGGGTTTTATGTTGATGGGGTTCTAATGCTGGCGTTTTTGTGGATGTTGAAGGCATATCTTGAGGTCATTTGCACCCTTGGTAGCCTAGTCTTTGTAAGCATCTTACTCATTCACGGGATCTGGATTGGAGTGGCTTATGTACAAGAAAACCGCAACCATAAAGGCGGCATTTTTGAAGATGAAGGCGGCCGGTCGAAGCGAGCTAGGAGGGACGTACGATCGGTTCTCCCAGTTGCAATCCCCAGCAAGTTGGTGAACATTCAATTAGATGTGGGGTTTTATGTTGATGGGGTTCTAAAGCTGGTGTTTTTGTGGATGTTGAAGGCATATCTTGAGGTCATTTGCACTCTTGGTAGCCTAGTCTTTGTAAGCATCTTACTCATTCATGGTATCTGGATTGGAGTGGCTTATGTACAAGAAAACTGCAACCATAAAGGCGGCAATGTTGAAGATGAAGGCCGCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.89

Weight (kDa)

7.74

Isoelectric Point (pI)

51.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	5 cut(s)	355, 369, 390, 642, 664
AclWI	GGATC	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	391
AcyI	GRCGYC	2 cut(s)	48, 66
AfaI	GTAC	3 cut(s)	345, 420, 618
AgsI	TTSAA	5 cut(s)	253, 380, 467, 526, 653
AluBI	AGCT	3 cut(s)	152, 407, 505
AluI	AGCT	3 cut(s)	152, 407, 505
AlwI	GGATC	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	3 cut(s)	159, 391, 661
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	121, 469
BanI	GGYRCC	1 cut(s)	47
BccI	CCATC	2 cut(s)	212, 485
BceAI	ACGGC	2 cut(s)	54, 651
BfaI	CTAG	3 cut(s)	290, 408, 563
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	4 cut(s)	370, 391, 643, 664
BlsI	GCNGC	4 cut(s)	371, 392, 644, 665
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	2 cut(s)	49, 77
BmrI	ACTGGG	2 cut(s)	173, 428
BmsI	GCATC	3 cut(s)	109, 312, 585
BmuI	ACTGGG	2 cut(s)	173, 428
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	2 cut(s)	284, 557
BsaHI	GRCGYC	2 cut(s)	48, 66
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	1 cut(s)	61
Bse118I	RCCGGY	2 cut(s)	78, 393
Bse1I	ACTGG	2 cut(s)	179, 434
Bse3DI	GCAATG	1 cut(s)	652
BseAI	TCCGGA	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	252, 525
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	2 cut(s)	179, 434
BseX3I	CGGCCG	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	446
Bsh1285I	CGRYCG	4 cut(s)	170, 394, 398, 425
BshFI	GGCC	3 cut(s)	161, 393, 663
BshNI	GGYRCC	1 cut(s)	47
BsiEI	CGRYCG	4 cut(s)	170, 394, 398, 425
BsiSI	CCGG	3 cut(s)	62, 79, 394
BsiWI	CGTACG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	161, 393, 663
Bsp13I	TCCGGA	1 cut(s)	61
Bsp1407I	TGTACA	2 cut(s)	343, 616
Bsp143I	GATC	3 cut(s)	167, 321, 422
BspACI	CCGC	5 cut(s)	355, 369, 390, 642, 664
BspANI	GGCC	3 cut(s)	161, 393, 663
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	49, 77
BspPI	GGATC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	652
BsrFI	RCCGGY	2 cut(s)	78, 393
BsrGI	TGTACA	2 cut(s)	343, 616
BsrI	ACTGG	2 cut(s)	179, 434
BssAI	RCCGGY	2 cut(s)	78, 393
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	3 cut(s)	167, 321, 422
BssNI	GRCGYC	2 cut(s)	48, 66
BssT1I	CCWWGG	1 cut(s)	280
BstACI	GRCGYC	2 cut(s)	48, 66
BstAUI	TGTACA	2 cut(s)	343, 616
BstC8I	GCNNGC	3 cut(s)	150, 234, 405
BstDEI	CTNAG	3 cut(s)	42, 132, 153
BstF5I	GGATG	2 cut(s)	252, 525
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	3 cut(s)	170, 324, 425
BstMBI	GATC	3 cut(s)	167, 321, 422
BstMCI	CGRYCG	4 cut(s)	170, 394, 398, 425
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 158
BstX2I	RGATCY	1 cut(s)	321
BstXI	CCANNNNNNTGG	2 cut(s)	199, 454
BstYI	RGATCY	1 cut(s)	321
BstZI	CGGCCG	1 cut(s)	391
BsuRI	GGCC	3 cut(s)	161, 393, 663
BtsCI	GGATG	2 cut(s)	252, 525
Cac8I	GCNNGC	3 cut(s)	150, 234, 405
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	78, 393
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	344, 419, 617
CviAII	CATG	1 cut(s)	590
CviQI	GTAC	3 cut(s)	344, 419, 617
DdeI	CTNAG	3 cut(s)	42, 132, 153
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	3 cut(s)	169, 323, 424
DpnII	GATC	3 cut(s)	167, 321, 422
EaeI	YGGCCR	1 cut(s)	391
EagI	CGGCCG	1 cut(s)	391
EclXI	CGGCCG	1 cut(s)	391
Eco130I	CCWWGG	1 cut(s)	280
Eco52I	CGGCCG	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	280
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	1 cut(s)	593
FaiI	YATR	9 cut(s)	213, 259, 342, 363, 486, 532, 591, 615, 636
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	589
Fnu4HI	GCNGC	4 cut(s)	370, 391, 643, 664
FokI	GGATG	2 cut(s)	259, 532
Fsp4HI	GCNGC	4 cut(s)	370, 391, 643, 664
FspBI	CTAG	3 cut(s)	290, 408, 563
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	4 cut(s)	370, 391, 643, 664
GsaI	CCCAGC	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	161, 393, 663
HapII	CCGG	3 cut(s)	62, 79, 394
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	48, 66
Hin1II	CATG	1 cut(s)	593
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HpaII	CCGG	3 cut(s)	62, 79, 394
HphI	GGTGA	2 cut(s)	121, 469
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	3 cut(s)	123, 133, 145
Hpy188III	TCNNGA	5 cut(s)	62, 263, 325, 536, 598
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	5 cut(s)	130, 247, 380, 520, 653
HpyCH4IV	ACGT	2 cut(s)	66, 417
HpyCH4V	TGCA	7 cut(s)	16, 100, 185, 276, 440, 549, 630
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 158
HpyF3I	CTNAG	3 cut(s)	42, 132, 153
HpySE526I	ACGT	2 cut(s)	66, 417
Hsp92I	GRCGYC	2 cut(s)	48, 66
Hsp92II	CATG	1 cut(s)	593
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	167, 321, 422
LmnI	GCTCC	2 cut(s)	75, 145
LweI	GCATC	3 cut(s)	109, 312, 585
MaeI	CTAG	3 cut(s)	290, 408, 563
MaeII	ACGT	2 cut(s)	66, 417
MalI	GATC	3 cut(s)	169, 323, 424
MboI	GATC	3 cut(s)	167, 321, 422
MboII	GAAGA	2 cut(s)	392, 665
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	2 cut(s)	10, 467
Mly113I	GGCGCC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	6 cut(s)	22, 81, 150, 259, 405, 532
MroI	TCCGGA	1 cut(s)	61
MspI	CCGG	3 cut(s)	62, 79, 394
MwoI	GCNNNNNNNGC	2 cut(s)	47, 158
NarI	GGCGCC	1 cut(s)	48
NdeII	GATC	3 cut(s)	167, 321, 422
NlaIII	CATG	1 cut(s)	593
NlaIV	GGNNCC	2 cut(s)	49, 77
Pfl23II	CGTACG	1 cut(s)	418
PkrI	GCNGC	4 cut(s)	371, 392, 644, 665
Ple19I	CGATCG	2 cut(s)	170, 425
PluTI	GGCGCC	1 cut(s)	51
PspFI	CCCAGC	1 cut(s)	446
PspLI	CGTACG	1 cut(s)	418
PspN4I	GGNNCC	2 cut(s)	49, 77
PspPI	GGNCC	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	411, 443
PsuI	RGATCY	1 cut(s)	321
PvuI	CGATCG	2 cut(s)	170, 425
RsaI	GTAC	3 cut(s)	345, 420, 618
RsaNI	GTAC	3 cut(s)	344, 419, 617
SatI	GCNGC	4 cut(s)	370, 391, 643, 664
Sau3AI	GATC	3 cut(s)	167, 321, 422
Sau96I	GGNCC	1 cut(s)	159
SetI	ASST	9 cut(s)	69, 92, 141, 154, 270, 409, 420, 507, 543
SfaNI	GCATC	3 cut(s)	109, 312, 585
SfoI	GGCGCC	1 cut(s)	49
SmlI	CTYRAG	2 cut(s)	263, 536
SmoI	CTYRAG	2 cut(s)	263, 536
Sse9I	AATT	2 cut(s)	10, 467
SsiI	CCGC	5 cut(s)	355, 369, 390, 642, 664
SspDI	GGCGCC	1 cut(s)	47
SspMI	CTAG	3 cut(s)	290, 408, 563
StyI	CCWWGG	1 cut(s)	280
TaiI	ACGT	2 cut(s)	69, 420
TaqI	TCGA	2 cut(s)	69, 398
TasI	AATT	2 cut(s)	10, 467
TatI	WGTACW	2 cut(s)	343, 616
TauI	GCSGC	4 cut(s)	372, 393, 645, 666
TspDTI	ATGAA	3 cut(s)	399, 578, 672
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	3 cut(s)	290, 408, 563
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.