Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Forward (+)

13733575 .. 13735179

Gene Structure 1605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10360.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCCGTTGTCGGCCAGTCTCTCTCCTCCCTCTCTCTATTACTTCCCCCAAACACAACACCACCAACCACAACACCATCTCCTTCACGTTCTCCATCCCCATCTCAAACCCAAAACACTCACCCTTCAATTTCAATCCCCCCGAGCCTCAAGACGATCCCCTAATTACCCTCAGGGCGGCGGTGCCGATAATCTCGCCGACGACCCCCGCAGTTGGGGCCGTTCGATCAATTCCGAGGTCGATCGGCGCTACGATTTTGAGGACGACGACGAAGACGATGAAGATGACGAGGACGACGAAGAAGACCGGAGTTTGGATTTGTTGGTGAGGTTTGTTCAGAATGTGTTCAAAAAGGTGTCCAGGCGTGCGAGGAGGGCCGTCCGATCAGTTCTCCCCGTCTCAATTCCCACCAAGTTGGTGGGATTTTCTGTTAATGGGGTGCTAATGCTAGCATTCTTGTGGGTCTTGAAGGCATTTCTTGAGGTTGTTTGCACCCTTGGAAGTCTAGTGTTCGTAAGCATCTTACTCATTCGTGGGATATGGACTGGAGTAGCCTATTATCAATATAACCGCAATCAGAAACCCCGCAATTTTGAAGACGACAACCGTCCATGGGCGGGCGCACAGCCCGCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

24.31

Weight (kDa)

6.38

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	7 cut(s)	177, 180, 208, 571, 586, 617, 630
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	12
AfiI	CCNNNNNNNGG	6 cut(s)	176, 213, 214, 313, 613, 617
AgsI	TTSAA	5 cut(s)	128, 134, 349, 469, 596
AjnI	CCWGG	1 cut(s)	359
Alw26I	GTCTC	2 cut(s)	23, 403
AlwI	GGATC	1 cut(s)	150
Ama87I	CYCGRG	1 cut(s)	141
AoxI	GGCC	3 cut(s)	12, 217, 375
Asp700I	GAANNNNTTC	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	249, 623
AspS9I	GGNCC	2 cut(s)	217, 375
AsuHPI	GGTGA	2 cut(s)	112, 337
AsuNHI	GCTAGC	1 cut(s)	448
AvaI	CYCGRG	1 cut(s)	141
AxyI	CCTNAGG	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	3 cut(s)	279, 309, 603
BccI	CCATC	3 cut(s)	84, 102, 108
BceAI	ACGGC	2 cut(s)	204, 362
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	23, 403
BfaI	CTAG	2 cut(s)	449, 506
BfoI	RGCGCY	1 cut(s)	250
BisI	GCNGC	1 cut(s)	178
BlsI	GCNGC	1 cut(s)	179
Bme1390I	CCNGG	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	141
BmgT120I	GGNCC	2 cut(s)	217, 375
BmiI	GGNNCC	2 cut(s)	184, 218
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	528
BmtI	GCTAGC	1 cut(s)	452
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	3 cut(s)	279, 309, 603
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	133, 500
BsaJI	CCNNGG	3 cut(s)	234, 496, 611
BsaWI	WCCGGW	1 cut(s)	306
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	6 cut(s)	176, 213, 214, 313, 613, 617
Bse1I	ACTGG	2 cut(s)	15, 550
Bse21I	CCTNAGG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	3 cut(s)	234, 496, 611
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	6 cut(s)	176, 213, 214, 313, 613, 617
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	15, 550
BseRI	GAGGAG	2 cut(s)	15, 385
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	3 cut(s)	14, 219, 377
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	6 cut(s)	176, 213, 214, 313, 613, 617
BsmAI	GTCTC	2 cut(s)	23, 403
BsmBI	CGTCTC	1 cut(s)	403
BsmI	GAATGC	1 cut(s)	452
BsnI	GGCC	3 cut(s)	14, 219, 377
BsoBI	CYCGRG	1 cut(s)	141
Bsp143I	GATC	4 cut(s)	155, 225, 241, 383
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	7 cut(s)	177, 180, 208, 571, 586, 617, 630
BspANI	GGCC	3 cut(s)	14, 219, 377
BspCNI	CTCAG	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	184, 218
BspOI	GCTAGC	1 cut(s)	452
BspPI	GGATC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	15, 550
BssECI	CCNNGG	3 cut(s)	234, 496, 611
BssMI	GATC	4 cut(s)	155, 225, 241, 383
BssT1I	CCWWGG	2 cut(s)	496, 611
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	608
BstC8I	GCNNGC	4 cut(s)	366, 450, 619, 630
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	94
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	2 cut(s)	249, 623
BstKTI	GATC	4 cut(s)	158, 228, 244, 386
BstMAI	GTCTC	2 cut(s)	23, 403
BstMBI	GATC	4 cut(s)	155, 225, 241, 383
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 374, 629
BstNI	CCWGG	1 cut(s)	361
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	1 cut(s)	359
BstV2I	GAAGAC	3 cut(s)	279, 309, 603
BstXI	CCANNNNNNTGG	2 cut(s)	415, 418
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	14, 219, 377
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	94
Cac8I	GCNNGC	4 cut(s)	366, 450, 619, 630
CfoI	GCGC	2 cut(s)	249, 623
Cfr13I	GGNCC	2 cut(s)	217, 375
CviAII	CATG	1 cut(s)	612
CviJI	RGCY	6 cut(s)	14, 146, 219, 377, 554, 628
CviKI_1	RGCY	6 cut(s)	14, 146, 219, 377, 554, 628
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	4 cut(s)	157, 227, 243, 385
DpnII	GATC	4 cut(s)	155, 225, 241, 383
EaeI	YGGCCR	1 cut(s)	12
Eco130I	CCWWGG	2 cut(s)	496, 611
Eco81I	CCTNAGG	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	2 cut(s)	496, 611
ErhI	CCWWGG	2 cut(s)	496, 611
Esp3I	CGTCTC	1 cut(s)	403
FaeI	CATG	1 cut(s)	615
FaiI	YATR	3 cut(s)	541, 567, 613
FatI	CATG	1 cut(s)	611
FauI	CCCGC	4 cut(s)	215, 593, 610, 637
Fnu4HI	GCNGC	1 cut(s)	178
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	178
FspBI	CTAG	2 cut(s)	449, 506
GlaI	GCGC	2 cut(s)	248, 622
GluI	GCNGC	1 cut(s)	178
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	3 cut(s)	14, 219, 377
HapII	CCGG	1 cut(s)	307
HhaI	GCGC	2 cut(s)	249, 623
Hin1II	CATG	1 cut(s)	615
Hin6I	GCGC	2 cut(s)	247, 621
HinP1I	GCGC	2 cut(s)	247, 621
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	112, 337
Hpy188I	TCNGA	4 cut(s)	235, 339, 383, 579
Hpy188III	TCNNGA	3 cut(s)	150, 466, 479
Hpy99I	CGWCG	4 cut(s)	203, 269, 272, 299
HpyAV	CCTTC	3 cut(s)	92, 134, 463
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	1 cut(s)	492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 374, 629
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	1 cut(s)	615
HspAI	GCGC	2 cut(s)	247, 621
Kzo9I	GATC	4 cut(s)	155, 225, 241, 383
LpnPI	CCDG	6 cut(s)	28, 158, 320, 346, 373, 531
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	2 cut(s)	449, 506
MaeII	ACGT	1 cut(s)	87
MalI	GATC	4 cut(s)	157, 227, 243, 385
MboI	GATC	4 cut(s)	155, 225, 241, 383
MboII	GAAGA	5 cut(s)	284, 293, 311, 314, 608
MluCI	AATT	5 cut(s)	128, 163, 229, 402, 589
MroXI	GAANNNNTTC	1 cut(s)	344
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	361
Mva1269I	GAATGC	1 cut(s)	452
MvaI	CCWGG	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	216, 374, 629
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	4 cut(s)	155, 225, 241, 383
NheI	GCTAGC	1 cut(s)	448
NlaIII	CATG	1 cut(s)	615
NlaIV	GGNNCC	2 cut(s)	184, 218
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 294
PctI	GAATGC	1 cut(s)	452
PdmI	GAANNNNTTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	179
Ple19I	CGATCG	1 cut(s)	244
PshAI	GACNNNNGTC	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	359
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	184, 218
PspPI	GGNCC	2 cut(s)	217, 375
PvuI	CGATCG	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	178
Sau3AI	GATC	4 cut(s)	155, 225, 241, 383
Sau96I	GGNCC	2 cut(s)	217, 375
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	6 cut(s)	90, 240, 332, 357, 486, 638
SfaNI	GCATC	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	2 cut(s)	148, 479
SmoI	CTYRAG	2 cut(s)	148, 479
Sse9I	AATT	5 cut(s)	128, 163, 229, 402, 589
SsiI	CCGC	7 cut(s)	177, 180, 208, 571, 586, 617, 630
SspMI	CTAG	2 cut(s)	449, 506
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	2 cut(s)	496, 611
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	224, 240
TasI	AATT	5 cut(s)	128, 163, 229, 402, 589
TauI	GCSGC	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TspDTI	ATGAA	1 cut(s)	294
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	344
XspI	CTAG	2 cut(s)	449, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.