Rorug05G0530700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004736
Physical Location & Seq
Forward (+)
71915616 .. 71916080
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0530700.1

Sequence Viewer

Length: 465 bp
ATGGAAGGATTTGTCATGGTTGGTTTGGTCTTTGCAAGTGTATCATTACTCATGTCATCTGCAGCAGCTCAAGTTCCTGATTATGACTATTTACCCGATGAGTCCATTACCCCTGCTAGCTCTGAAGATGTTGAAGCCTACGCTCCAGTTACGATCGAGTATGGGTTTCCACCAGAGCCGTACCGTGGATATTATGACAATTTAGACCAATGCGAAGACAACTTCAACCTAAATTGTGTTAAAGAGATTTACCGCGGTATGTTCAAAACCGAGCCTCTTAATAAGAACTGTTGCAAGAACCTTGTGCAGATGGGATATGGCTGTCACAGTAGGTTAGCGAAATTTGCGAACCCGAGAAATAAAGCAAAAGCTTCCATGTCATTGGCTAAGAGTGTGCATATTTGGCAAAAGTGTGTCTCAGTTGTTGAAATTGGTCGATTCCCTGCTGGTCCTGCTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.11

Weight (kDa)

5.37

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 70 - 139 2.7e-10 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 255
AciI CCGC 2 cut(s) 253, 255
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 4 cut(s) 134, 226, 265, 428
AluBI AGCT 3 cut(s) 68, 120, 371
AluI AGCT 3 cut(s) 68, 120, 371
Alw26I GTCTC 1 cut(s) 421
Ama87I CYCGRG 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 62, 65
ApoI RAATTY 1 cut(s) 341
AspS9I GGNCC 1 cut(s) 449
AsuNHI GCTAGC 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 1 cut(s) 449
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 74, 77
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 163
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 63, 66
BlsI GCNGC 2 cut(s) 64, 67
Bme18I GGWCC 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 1 cut(s) 449
BmtI GCTAGC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 129
BpuEI CTTGAG 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 184, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 184, 253
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 2 cut(s) 74, 77
BsgI GTGCAG 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 255
Bsh1285I CGRYCG 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 421
BsoBI CYCGRG 1 cut(s) 352
Bsp143I GATC 1 cut(s) 153
BspACI CCGC 2 cut(s) 253, 255
BspCNI CTCAG 1 cut(s) 431
BspFNI CGCG 1 cut(s) 255
BspMAI CTGCAG 1 cut(s) 64
BspOI GCTAGC 1 cut(s) 120
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 184, 253
BssMI GATC 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 185, 290, 329
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 387, 418
BstDSI CCRYGG 2 cut(s) 184, 253
BstFNI CGCG 1 cut(s) 255
BstKTI GATC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 344, 403, 452
BstSFI CTRYAG 1 cut(s) 60
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 2 cut(s) 74, 77
BstV2I GAAGAC 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 382
BtgI CCRYGG 2 cut(s) 184, 253
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 449
Cfr42I CCGCGG 1 cut(s) 256
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 16, 52, 376
CviJI RGCY 8 cut(s) 68, 120, 137, 178, 274, 321, 371, 386
CviKI_1 RGCY 8 cut(s) 68, 120, 137, 178, 274, 321, 371, 386
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 2 cut(s) 387, 418
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 449
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 352
FaeI CATG 3 cut(s) 19, 55, 379
FaiI YATR 9 cut(s) 17, 53, 84, 162, 195, 260, 318, 377, 399
FatI CATG 3 cut(s) 15, 51, 375
Fnu4HI GCNGC 2 cut(s) 63, 66
Fsp4HI GCNGC 2 cut(s) 63, 66
FspBI CTAG 1 cut(s) 117
GluI GCNGC 2 cut(s) 63, 66
GsuI CTGGAG 1 cut(s) 129
Hin1II CATG 3 cut(s) 19, 55, 379
HindIII AAGCTT 1 cut(s) 369
HinfI GANTC 2 cut(s) 101, 438
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 77
HpyCH4III ACNGT 3 cut(s) 185, 290, 329
HpyCH4V TGCA 5 cut(s) 35, 62, 294, 307, 397
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 403, 452
HpyF3I CTNAG 2 cut(s) 387, 418
Hsp92II CATG 3 cut(s) 19, 55, 379
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 1 cut(s) 153
LmnI GCTCC 2 cut(s) 148, 460
LpnPI CCDG 6 cut(s) 90, 126, 159, 186, 432, 456
Lsp1109I GCAGC 2 cut(s) 74, 77
MaeI CTAG 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 148, 323
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 2 cut(s) 137, 227
MluCI AATT 4 cut(s) 199, 232, 341, 429
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 1 cut(s) 285
MseI TTAA 2 cut(s) 240, 279
MspA1I CMGCKG 1 cut(s) 255
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 3 cut(s) 344, 403, 452
NdeII GATC 1 cut(s) 153
NheI GCTAGC 1 cut(s) 116
NlaIII CATG 3 cut(s) 19, 55, 379
NmuCI GTSAC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 438
PkrI GCNGC 2 cut(s) 64, 67
Ple19I CGATCG 1 cut(s) 156
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 449
PstI CTGCAG 1 cut(s) 64
PvuI CGATCG 1 cut(s) 156
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
SacII CCGCGG 1 cut(s) 256
SaqAI TTAA 2 cut(s) 240, 279
SatI GCNGC 2 cut(s) 63, 66
Sau3AI GATC 1 cut(s) 153
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 110
SetI ASST 6 cut(s) 70, 122, 231, 303, 335, 373
SfcI CTRYAG 1 cut(s) 60
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 4 cut(s) 199, 232, 341, 429
SsiI CCGC 2 cut(s) 253, 255
SspMI CTAG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 185, 290, 329
TaqI TCGA 2 cut(s) 156, 436
TasI AATT 4 cut(s) 199, 232, 341, 429
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 2 cut(s) 240, 279
Tru9I TTAA 2 cut(s) 240, 279
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 2 cut(s) 62, 65
Tsp45I GTSAC 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 1 cut(s) 341
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.