Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005018.1

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Reverse (-)

35596 .. 38067

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005018.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggagagtaatttgcaagacaactttgaggaactgacggctaagggcgcccaagccactccggacgtcgataggagctggttggtgaggtttgtcttgcatctgttggtgagcgttgttcaaaatgtatctgagaaggtgtcggagcgagctaagagggccttacgatcggttctcccagttgcaatccccaccgagttggtggggttttatgttgatggggttctaatgctggcgtttttgtggatgttgaaggcatatcttgaggtcatttgcactcttggtagcctagtctttgtaagcatcttactcattcatggtatctggattggagtggcttatgtacaagaaaactgcaaccataaaggcggcaatgttgaagatgaaggccgccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.76

Weight (kDa)

5.57

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	47
AccIII	TCCGGA	1 cut(s)	61
AciI	CCGC	2 cut(s)	369, 391
AcyI	GRCGYC	2 cut(s)	48, 66
AfaI	GTAC	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	122, 253, 380
AluBI	AGCT	2 cut(s)	78, 152
AluI	AGCT	2 cut(s)	78, 152
Aor13HI	TCCGGA	1 cut(s)	61
AoxI	GGCC	2 cut(s)	159, 388
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	97, 121
BanI	GGYRCC	1 cut(s)	47
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	2 cut(s)	54, 378
BfaI	CTAG	1 cut(s)	290
BfoI	RGCGCY	1 cut(s)	51
BisI	GCNGC	2 cut(s)	370, 391
BlsI	GCNGC	2 cut(s)	371, 392
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	109, 312
BmuI	ACTGGG	1 cut(s)	173
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	284
BsaHI	GRCGYC	2 cut(s)	48, 66
BsaWI	WCCGGW	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	179
Bse3DI	GCAATG	1 cut(s)	379
BseAI	TCCGGA	1 cut(s)	61
BseGI	GGATG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	161, 390
BshNI	GGYRCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	62
BsnI	GGCC	2 cut(s)	161, 390
Bsp13I	TCCGGA	1 cut(s)	61
Bsp1407I	TGTACA	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	369, 391
BspANI	GGCC	2 cut(s)	161, 390
BspCNI	CTCAG	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	379
BsrGI	TGTACA	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	167
BssNI	GRCGYC	2 cut(s)	48, 66
BstACI	GRCGYC	2 cut(s)	48, 66
BstAUI	TGTACA	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	150, 234
BstDEI	CTNAG	3 cut(s)	42, 132, 153
BstF5I	GGATG	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	167
BstMCI	CGRYCG	1 cut(s)	170
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 158
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	161, 390
BtsCI	GGATG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	150, 234
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	8 cut(s)	41, 56, 78, 152, 161, 288, 338, 390
CviKI_1	RGCY	8 cut(s)	41, 56, 78, 152, 161, 288, 338, 390
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	3 cut(s)	42, 132, 153
DinI	GGCGCC	1 cut(s)	49
DpnI	GATC	1 cut(s)	169
DpnII	GATC	1 cut(s)	167
EcoO109I	RGGNCCY	1 cut(s)	159
EgeI	GGCGCC	1 cut(s)	49
EheI	GGCGCC	1 cut(s)	49
FaeI	CATG	1 cut(s)	320
FaiI	YATR	5 cut(s)	213, 259, 318, 342, 363
FalI	AAGNNNNNCTT	2 cut(s)	146, 178
FatI	CATG	1 cut(s)	316
Fnu4HI	GCNGC	2 cut(s)	370, 391
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	370, 391
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	2 cut(s)	370, 391
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	161, 390
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	2 cut(s)	48, 66
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	97, 121
Hpy188I	TCNGA	2 cut(s)	133, 145
Hpy188III	TCNNGA	3 cut(s)	62, 263, 325
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	3 cut(s)	130, 247, 380
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	5 cut(s)	16, 100, 185, 276, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 158
HpyF3I	CTNAG	3 cut(s)	42, 132, 153
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	2 cut(s)	48, 66
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	1 cut(s)	48
KasI	GGCGCC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	167
LmnI	GCTCC	2 cut(s)	75, 145
LpnPI	CCDG	5 cut(s)	64, 75, 192, 218, 310
LweI	GCATC	2 cut(s)	109, 312
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	66
MalI	GATC	1 cut(s)	169
MboI	GATC	1 cut(s)	167
MboII	GAAGA	1 cut(s)	392
MluCI	AATT	1 cut(s)	10
Mly113I	GGCGCC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	4 cut(s)	22, 81, 150, 259
MroI	TCCGGA	1 cut(s)	61
MspI	CCGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	47, 158
NarI	GGCGCC	1 cut(s)	48
NdeII	GATC	1 cut(s)	167
NlaIII	CATG	1 cut(s)	320
NlaIV	GGNNCC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	371, 392
Ple19I	CGATCG	1 cut(s)	170
PluTI	GGCGCC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	159
PvuI	CGATCG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SatI	GCNGC	2 cut(s)	370, 391
Sau3AI	GATC	1 cut(s)	167
Sau96I	GGNCC	1 cut(s)	159
SetI	ASST	6 cut(s)	69, 80, 92, 141, 154, 270
SfaNI	GCATC	2 cut(s)	109, 312
SfoI	GGCGCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	2 cut(s)	369, 391
SspDI	GGCGCC	1 cut(s)	47
SspMI	CTAG	1 cut(s)	290
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	10
TatI	WGTACW	1 cut(s)	343
TauI	GCSGC	2 cut(s)	372, 393
TspDTI	ATGAA	2 cut(s)	305, 399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	290
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.