Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004736

Physical Location & Seq

Genomic Coordinates Reverse (-)

2431776 .. 2434846

Gene Structure 3071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03150.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCCATTATCGGCGACGCTCTCACCTCCAACACTCTCTCTCTTCCCTCAATTTCAACCCCCGCACCAATCAAACCTTCATCTCCCTCACAACCTCACTCCATTTCTCAAACCCAAACGACTCTTCACTCCCCAATTCGCCGCTCGACGAAGCCCTAATTACCCACAGGGCGGCGGCGGCGGCGGTGATGGCTTCGTCGACGATCCTCGCAATTGGAGCCGCACAATAAACTCCGAGATTGACCGGCCCTACGGCTTTGACGACGAAGACGAGGACGCTGAGGACGAAGACGACGATGACGAAGAAGATAGGAGCTTGGATCTGCTGGTGAGGTTTGTGCAGAATGTGTTCAAGAAGGTATCGAAGCGAGCCAGGAGGGCCGTCCGATCGGTTCTTCCCGTTGCAATCCCCACCAAGTTGGTGGGGTTTTCTGTGAATGGGGTGCTATTGCTGGCGTTTTTGTGGGTCTTGAAGGCATTTCTTGAGGTCATTTGCACCCTTGGTAGCCTAGTCTTTGTAAGCATCTTACTGATTCGTGGGATCTGGATTGGAGTGGCTTATGTACAAGAAAACCGCAACCATAAAATCGGCAATTTTGAAGATGAAAGCCGCCCATGGACTGGCGCACAGCCAGCTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

214

Amino Acids

23.9

Weight (kDa)

5.59

Isoelectric Point (pI)

58.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33780
fragaria_vesca	FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150 FvH4_2g03150
malus_domestica	MD05G1106700.v1.1 MD10G1111500.v1.1
prunus_persica	Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1 Prupe.8G150800_v2.0.a1
pyrus_communis	pycom05g10360 pycom10g09630
rosa_chinensis	RchiOBHm_Chr6g0248281
rosa_multiflora	Rmu_sc0005018.1_g000005 Rmu_sc0005018.1_g000008 Rmu_ssc0000359.1_g000001
rosa_roxburghii	Rroxscaffold_7G00213430
rosa_rugosa	Rorug05G0530400 Rorug05G0530500 Rorug05G0530500 Rorug05G0530600.1 Rorug05G0530700
rosa_samantha	Rh6AG045700 Rh6BG041400 Rh6BG041800 Rh6BG042100 Rh6CG039000 Rh6DG035800
rosa_wichuraiana	Rw6G003960 Rw6G003990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccBSI	CCGCTC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	198
AclWI	GGATC	3 cut(s)	197, 327, 548
AfaI	GTAC	1 cut(s)	564
AfiI	CCNNNNNNNGG	2 cut(s)	170, 620
AgsI	TTSAA	4 cut(s)	56, 352, 472, 599
AjnI	CCWGG	1 cut(s)	371
AjuI	GAANNNNNNNTTGG	4 cut(s)	60, 92, 107, 139
AluBI	AGCT	2 cut(s)	315, 635
AluI	AGCT	2 cut(s)	315, 635
AlwI	GGATC	3 cut(s)	197, 327, 548
AoxI	GGCC	2 cut(s)	245, 378
Asp700I	GAANNNNTTC	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	246, 378
AsuHPI	GGTGA	3 cut(s)	15, 197, 340
BbsI	GAAGAC	2 cut(s)	273, 294
BbvCI	CCTCAGC	1 cut(s)	279
BccI	CCATC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	268, 365
BciT130I	CCWGG	1 cut(s)	373
BfaI	CTAG	1 cut(s)	509
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	7 cut(s)	141, 172, 175, 178, 181, 220, 610
BlsI	GCNGC	7 cut(s)	142, 173, 176, 179, 182, 221, 611
Bme1390I	CCNGG	1 cut(s)	373
BmgT120I	GGNCC	2 cut(s)	246, 378
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	1 cut(s)	531
BpiI	GAAGAC	2 cut(s)	273, 294
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	499, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 620
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	625
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	499, 614
BseLI	CCNNNNNNNGG	2 cut(s)	170, 620
BseMII	CTCAG	1 cut(s)	270
BseNI	ACTGG	1 cut(s)	625
BsgI	GTGCAG	1 cut(s)	359
Bsh1285I	CGRYCG	1 cut(s)	389
BshFI	GGCC	2 cut(s)	247, 380
BsiEI	CGRYCG	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	170, 620
BsnI	GGCC	2 cut(s)	247, 380
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	202, 319, 386, 540
Bsp19I	CCATGG	1 cut(s)	614
BspANI	GGCC	2 cut(s)	247, 380
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	197, 327, 548
BsrBI	CCGCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	625
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	499, 614
BssMI	GATC	4 cut(s)	202, 319, 386, 540
BssT1I	CCWWGG	2 cut(s)	499, 614
Bst2UI	CCWGG	1 cut(s)	373
Bst6I	CTCTTC	2 cut(s)	47, 128
BstAUI	TGTACA	1 cut(s)	562
BstC8I	GCNNGC	3 cut(s)	369, 453, 633
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	614
BstHHI	GCGC	1 cut(s)	626
BstKTI	GATC	4 cut(s)	205, 322, 389, 543
BstMBI	GATC	4 cut(s)	202, 319, 386, 540
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 180, 189, 216, 377, 632
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstV2I	GAAGAC	2 cut(s)	273, 294
BstX2I	RGATCY	2 cut(s)	319, 540
BstXI	CCANNNNNNTGG	2 cut(s)	418, 421
BstYI	RGATCY	2 cut(s)	319, 540
BsuRI	GGCC	2 cut(s)	247, 380
BtgI	CCRYGG	1 cut(s)	614
Cac8I	GCNNGC	3 cut(s)	369, 453, 633
CfoI	GCGC	1 cut(s)	626
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	246, 378
CseI	GACGC	2 cut(s)	25, 284
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	1 cut(s)	615
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	4 cut(s)	204, 321, 388, 542
DpnII	GATC	4 cut(s)	202, 319, 386, 540
Eam1104I	CTCTTC	2 cut(s)	47, 128
EarI	CTCTTC	2 cut(s)	47, 128
Eco130I	CCWWGG	2 cut(s)	499, 614
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	499, 614
ErhI	CCWWGG	2 cut(s)	499, 614
FaeI	CATG	1 cut(s)	618
FaiI	YATR	3 cut(s)	561, 582, 616
FatI	CATG	1 cut(s)	614
FauI	CCCGC	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	7 cut(s)	141, 172, 175, 178, 181, 220, 610
Fsp4HI	GCNGC	7 cut(s)	141, 172, 175, 178, 181, 220, 610
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	625
GluI	GCNGC	7 cut(s)	141, 172, 175, 178, 181, 220, 610
HaeIII	GGCC	2 cut(s)	247, 380
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	2 cut(s)	25, 284
HhaI	GCGC	1 cut(s)	626
Hin1II	CATG	1 cut(s)	618
Hin6I	GCGC	1 cut(s)	624
HinP1I	GCGC	1 cut(s)	624
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	120, 532
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	3 cut(s)	15, 197, 340
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	235, 386
Hpy188III	TCNNGA	4 cut(s)	352, 469, 482, 544
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	6 cut(s)	19, 150, 200, 203, 266, 296
HpyAV	CCTTC	3 cut(s)	86, 349, 466
HpyCH4V	TGCA	3 cut(s)	340, 404, 495
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 180, 189, 216, 377, 632
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	618
HspAI	GCGC	1 cut(s)	624
Kzo9I	GATC	4 cut(s)	202, 319, 386, 540
LmnI	GCTCC	2 cut(s)	216, 312
LpnPI	CCDG	8 cut(s)	152, 257, 311, 358, 385, 437, 529, 606
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	1 cut(s)	509
MalI	GATC	4 cut(s)	204, 321, 388, 542
MbiI	CCGCTC	1 cut(s)	143
MboI	GATC	4 cut(s)	202, 319, 386, 540
MboII	GAAGA	8 cut(s)	34, 115, 278, 299, 314, 317, 386, 611
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	2 cut(s)	319, 540
MluCI	AATT	5 cut(s)	50, 134, 157, 211, 592
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	347
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	373
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	6 cut(s)	177, 180, 189, 216, 377, 632
NcoI	CCATGG	1 cut(s)	614
NdeII	GATC	4 cut(s)	202, 319, 386, 540
NlaIII	CATG	1 cut(s)	618
NlaIV	GGNNCC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	5 cut(s)	258, 267, 282, 291, 297
PdmI	GAANNNNTTC	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	532
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	7 cut(s)	142, 173, 176, 179, 182, 221, 611
Ple19I	CGATCG	1 cut(s)	389
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	246, 378
PsuI	RGATCY	2 cut(s)	319, 540
PvuI	CGATCG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SalI	GTCGAC	1 cut(s)	197
SatI	GCNGC	7 cut(s)	141, 172, 175, 178, 181, 220, 610
Sau3AI	GATC	4 cut(s)	202, 319, 386, 540
Sau96I	GGNCC	2 cut(s)	246, 378
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	373
SetI	ASST	9 cut(s)	28, 78, 96, 317, 335, 360, 489, 637, 641
SfaNI	GCATC	1 cut(s)	531
SgrDI	CGTCGACG	1 cut(s)	197
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	5 cut(s)	50, 134, 157, 211, 592
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	2 cut(s)	499, 614
TaqI	TCGA	3 cut(s)	145, 198, 362
TasI	AATT	5 cut(s)	50, 134, 157, 211, 592
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	7 cut(s)	143, 174, 177, 180, 183, 222, 612
TfiI	GAWTC	1 cut(s)	532
TspDTI	ATGAA	2 cut(s)	68, 618
Van91I	CCANNNNNTGG	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	347
XspI	CTAG	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.