AT4G34100

E3 ubiquitin ligase SUD1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009109
Physical Location & Seq
Forward (+)
16330366 .. 16335247
4882 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34100.1

Sequence Viewer

Length: 3327 bp
ATGGAGATTTCCCCGGCCGATTCGTTGTCCATCTCTGGCGCGGCTGCTTCTGAGGTCGTCTCCGAGCCTTCCGTATCTTCTTCTTCTTCCTCTTCCTCGCCGAATCAGGCATCACCCAATCCTTTCTCAAACATGGATCCTGCAGTTTCGACGGCGACAGGATCGAGGTACGTTGATGATGACGAAGATGAAGAGGACGTTTGCAGGATCTGCAGAAATCCTGGTGATGCAGACAATCCGCTTCGGTATCCGTGTGCCTGTAGCGGAAGTATCAAATTTGTTCACCAGGATTGTCTCCTTCAGTGGCTTAATCACAGCAACGCTCGTCAATGCGAGGTTTGCAAGCATCCTTTTTCATTCTCCCCAGTATATGCTGACAATGCTCCGTCAAGGCTCCCTTTCCAGGAGTTTGTAGTTGGCATTGCTATGAAAGCTTGCCATGTTTTACAGTTCTTTCTGCGGTTGAGTTTTGTGCTTTCTGTCTGGCTTCTCACTATACCTTTCATTACATTTTGGATATGGCGTTTGGCTTTCGTGCGAACTTTTGGTGAAGCTCAAAGGTTGTTCTTAAGCCACATCTCCACCACAGTAATTCTCACTGATTGCTTGCATGGGTTCTTACTATCTGCAAGTATTGTCTTCATCTTCCTTGGAGCTACTTCATTAAGGGACTACTTTAGGCACTTACGAGAGCTTGGGGGACAAGAAGAGAGAGATGATGATGTGGACAGAAATGGTGCTCGTGCTGCAAGAAGACCTGCTGGACAGGCTAATAGGAATCTTGCTGGAGAGGGGAATGGTGAAGATGCTGGGGATCAGGGTGCTGCGGTTGGTCAGATTGCTAGAAGGAATCCTGAAAATGTTCTGGCAAGGTTGGACATACAAGCAGCTCGTCTTGAGGCTCAGGTTGAACAGATGTTTGATGGGTTGGATGACGCTGATGGTGCAGAAGACGTTCCATTTGATGAGCTGGTTGGAATGCAAGGTCCAGTGTTTCATTTGGTTGAGAATGCCTTTACTGTTCTAGCAAGCAATATGATATTCCTTGGTGTTGTTATCTTCGTGCCCTTTACCTTGGGACGGATTATATTGTATCACGTGTCATGGCTTTTTGCTGCTGCTAGAGGCCCTGCTGTGGCTGCATCATTGCATCTTACAGATACCGGACTCTCATTGGAAAATATTACTCTGAAGAGTGCGCTGACTGCTGTCTCGAATTTGACTAGCGAGGGCCAAGGAAATGGGCTGCTTGGTCAGCTCACTGAAATGATGAAAGTCAACGGAAGTGAATTGAATGGAGCAAACAATACGCTATCAGTTGCTACTGATCTCCTGAAAGGTTCTACTGTTGGGGCCTCAAAGCTTTCTGATATTACAACTCTGGCTGTTGGGTACATGTTTATCGTATTTCTGGTGTTCCTTTACCTTGGGATCATTGCACTGATTCGATATGCCAAGGGTGAGCCACTGACTGTTGGAAGATTTTATGGTATTGCATCTATAGTAGAAGCTGTACCATCCCTCCTTAGACAGTTCTTGGCAGCAATGAGGCATCTGATGACCATGATCAAAGTTGCCTTTCTTTTGGTCATCGAGCTTGGGGTCTTTCCTCTGATGTGTGGTTGGTGGCTAGATGTTTGCACTGTTAGGATGTTCGGTAAAACAATGTCCCACAGGGTACAGTTTTTATCAATTTCTCCTCTGGCAAGCTCACTTGTTCATTGGGTTGTTGGAATCATGTACATGTTGCAAATAAGCATCTTCGTCAGCCTTCTTCGAGGGGTTCTTCGTCCTGGAGTTCTGTATTTCCTTCGTGATCCAGCAGATCCTAATTACAATCCATTCCGAGATTTGATTGATGATCCAGTGCACAAGCATGCTCGGAGGGTACTGTTATCAGTTGCAGTGTATGGAAGTTTGATTGTGATGCTGGTATTTTTACCAGTCAAACTTGCGATCCGGATGGCTCCTTCAATCTTTCCACTTGACATATCTGTATCCGACCCATTCACTGAGATTCCCGCCGACATGCTTCTGTTTCAAATATGCATTCCATTTATCATCGAGCATTTCAGACTTCGGACCACAATTAAGTCCCTTCTACGCTGCTGGTTCACTGGGGTTGGTTGGGCGCTTGGTTTAACAGACTTCCTCTTGCCAAGACCAGAAGACAACATTGGTCAGGACAATGGAAATGGTGAACCAGGAAGGCAGAACAGAGCACAAGTGTTGCAGGTCGGAGGACCTGACAGGGCCATGGCTGCGCTTCCAGTAGCTGATGACCCTAACAGAAGTCGCCTCCGTGCTGGGAATGTCAACACGGGTGAGGAATATGAAGATGATGACGAACAATCTGATTCTGACAGGTACAACTTTGTGGTCCGGATAATTCTCCTTCTACTTGTTGCATGGGTGACTCTTCTTCTCTTCAATTCAGCATTGATAGTTGTGCCAGTTTCGCTGGGACGTGCTCTATTCAGTGCCATTCCCATTCTTCCAATAACTCATGGCATCAAGTGCAATGATCTGTATGCTTTCGTCATTGGCACATATGCCTTTTGGACTACCATATCTGGGGCCAGGTATGCTATCGAGCATGTCAAGTCAAAGAGGACTTCAGTCTTGCTTAACCAAATATGGAAATGGTGTGGGATTGTATTCAAGAGCTCGGTGCTGTTAGCCATATGGGTTTTTATCATTCCGGTGCTAATTGGACTTCTGTTTGAGCTTTTGGTGATTGTCCCAATGAGAGTCCCAGTTGATGAAAGCCCTGTGTTCCTCCTGTATCAAGACTGGGCTCTTGGGCTCATCTTTTTGAAAATCTGGACTAGACTGGTAATGCTGGATCATATGCTTCCAATAGTGGATGATAGCTGGAGAGCAAAGTTTGAGCGGGTAAGAGAAGATGGCTTCTCGAGGCTTCAAGGGTTATGGGTACTTAGAGAGATTGTGTTCCCGATCGTCATGAAACTCCTAACGGCTTTATGCGTGCCTTATGTGTTGGCAAGAGGAGTGTTCCCAATGCTCGGATATCCGCTTGTTGTGAACTCAGCGGTCTACAGATTCGCGTGGATAGGTTGTCTTTCAGTGAGCCTCTTCTGCTTCTGTGCAAAAAGATGCCATGTCTGGTTTAGAAACCTTCACAACTCTATCCGTGATGACCGTTATCTCATTGGTCGGAGACTGCATAACTTTGGGGAAGCTGCTTTAGCTAATCAAAACCAAAACCAAAGTAGTGAGGATGCAGGAGATGGTGTCTTGATAGGACGAGAGGGAGATGTTGATAATGGACTTAGGCTCAGACGTGCAATCCAACAAGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0001101 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006720 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009698 GO:0009699 GO:0009893 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010243 GO:0010345 GO:0010498 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030176 GO:0030433 GO:0031224 GO:0031227 GO:0031624 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042175 GO:0042221 GO:0042335 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0048518 GO:0048856 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0051603 GO:0051716 GO:0065007 GO:0065009 GO:0070647 GO:0070936 GO:0071704 GO:0098827 GO:0140096 GO:1900490 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901568 GO:1901570 GO:1901575 GO:1901576 GO:1901698 GO:1901700 GO:1990381 GO:2001215
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
RINGv

Protein Analysis

1108

Amino Acids

123.0

Weight (kDa)

5.97

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 68 - 114 9.9e-17 RING-variant domain
MARCHF6_C PF23113 874 - 1052 6.9e-52 E3 ubiquitin-protein ligase MARCHF6-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 766, 2224
AccBSI CCGCTC 1 cut(s) 2893
AccI GTMKAC 1 cut(s) 3057
AccII CGCG 2 cut(s) 41, 3068
AccIII TCCGGA 2 cut(s) 1959, 2382
AciI CCGC 9 cut(s) 41, 239, 264, 460, 827, 2022, 2893, 3035, 3053
AcoI YGGCCR 1 cut(s) 15
AcsI RAATTY 2 cut(s) 275, 1216
AcuI CTGAAG 3 cut(s) 284, 1211, 2601
AcvI CACGTG 1 cut(s) 1099
AfaI GTAC 8 cut(s) 170, 1394, 1515, 1680, 1742, 1890, 2369, 2937
AfiI CCNNNNNNNGG 5 cut(s) 403, 1080, 1135, 2574, 3026
AflII CTTAAG 1 cut(s) 568
AflIII ACRYGT 3 cut(s) 1098, 1395, 1743
AgsI TTSAA 8 cut(s) 911, 1294, 1974, 2042, 2431, 2662, 2818, 2924
AjiI CACGTC 2 cut(s) 2468, 3305
AjnI CCWGG 6 cut(s) 220, 285, 402, 1792, 2203, 2579
AjuI GAANNNNNNNTTGG 2 cut(s) 2160, 2192
Alw21I GWGCWC 5 cut(s) 742, 1872, 2224, 2473, 2669
Alw26I GTCTC 4 cut(s) 64, 299, 1216, 3175
Alw44I GTGCAC 1 cut(s) 1868
AlwNI CAGNNNCTG 2 cut(s) 210, 2276
Ama87I CYCGRG 1 cut(s) 2914
Aor13HI TCCGGA 2 cut(s) 1959, 2382
AoxI GGCC 6 cut(s) 15, 1126, 1231, 1353, 2253, 2577
ApaLI GTGCAC 1 cut(s) 1868
ApoI RAATTY 2 cut(s) 275, 1216
ArsI GACNNNNNNTTYG 2 cut(s) 944, 976
Asp700I GAANNNNTTC 2 cut(s) 861, 954
AspLEI GCGC 4 cut(s) 41, 1201, 2134, 2266
AspS9I GGNCC 9 cut(s) 986, 1127, 1231, 1353, 2082, 2243, 2253, 2380, 2577
AsuC2I CCSGG 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 2914
AvaII GGWCC 4 cut(s) 986, 2082, 2243, 2380
BaeGI GKGCMC 2 cut(s) 1068, 1872
BamHI GGATCC 1 cut(s) 136
BanII GRGCYC 3 cut(s) 2669, 2800, 2808
BauI CACGAG 1 cut(s) 741
BbrPI CACGTG 1 cut(s) 1099
BbsI GAAGAC 4 cut(s) 631, 760, 957, 2175
Bbv12I GWGCWC 5 cut(s) 742, 1872, 2224, 2473, 2669
BccI CCATC 7 cut(s) 38, 917, 935, 1525, 1957, 2900, 3245
BceAI ACGGC 2 cut(s) 168, 2994
BciT130I CCWGG 6 cut(s) 222, 287, 404, 1794, 2205, 2581
BciVI GTATCC 2 cut(s) 258, 2008
BclI TGATCA 1 cut(s) 1566
BcnI CCSGG 1 cut(s) 14
BcoDI GTCTC 4 cut(s) 64, 299, 1216, 3175
BfaI CTAG 6 cut(s) 843, 1025, 1122, 1224, 1631, 2829
BfmI CTRYAG 5 cut(s) 141, 211, 259, 1500, 3058
BfoI RGCGCY 1 cut(s) 2135
BfrI CTTAAG 1 cut(s) 568
BfuAI ACCTGC 2 cut(s) 766, 2224
BfuI GTATCC 2 cut(s) 258, 2008
Bme1390I CCNGG 7 cut(s) 14, 222, 287, 404, 1794, 2205, 2581
Bme18I GGWCC 4 cut(s) 986, 2082, 2243, 2380
BmeT110I CYCGRG 1 cut(s) 2914
BmgBI CACGTC 2 cut(s) 2468, 3305
BmgT120I GGNCC 9 cut(s) 986, 1127, 1231, 1353, 2082, 2243, 2253, 2380, 2577
BmiI GGNNCC 5 cut(s) 138, 395, 1354, 1968, 2578
BmrFI CCNGG 7 cut(s) 14, 222, 287, 404, 1794, 2205, 2581
BmrI ACTGGG 4 cut(s) 359, 2127, 2750, 2803
BmuI ACTGGG 4 cut(s) 359, 2127, 2750, 2803
BoxI GACNNNNGTC 2 cut(s) 1208, 2618
BpiI GAAGAC 4 cut(s) 631, 760, 957, 2175
BplI GAGNNNNNCTC 2 cut(s) 44, 76
BpmI CTGGAG 3 cut(s) 807, 1815, 2896
Bpu10I CCTNAGC 1 cut(s) 903
BpuEI CTTGAG 1 cut(s) 917
BpuMI CCSGG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 1099
BsaJI CCNNGG 8 cut(s) 12, 649, 1045, 1074, 1234, 1426, 1455, 2256
BsaWI WCCGGW 4 cut(s) 1163, 1959, 2382, 2701
BsaXI ACNNNNNCTCC 4 cut(s) 1506, 1536, 3240, 3270
Bsc4I CCNNNNNNNGG 5 cut(s) 403, 1080, 1135, 2574, 3026
Bse3DI GCAATG 5 cut(s) 420, 1145, 1434, 1551, 2527
BseAI TCCGGA 2 cut(s) 1959, 2382
BseBI CCWGG 6 cut(s) 222, 287, 404, 1794, 2205, 2581
BseDI CCNNGG 8 cut(s) 12, 649, 1045, 1074, 1234, 1426, 1455, 2256
BseGI GGATG 7 cut(s) 346, 937, 1517, 1656, 1968, 2872, 3247
BseLI CCNNNNNNNGG 5 cut(s) 403, 1080, 1135, 2574, 3026
BseMI GCAATG 5 cut(s) 420, 1145, 1434, 1551, 2527
BseMII CTCAG 5 cut(s) 42, 917, 2004, 3063, 3313
BseRI GAGGAG 2 cut(s) 1689, 3024
BseSI GKGCMC 2 cut(s) 1068, 1872
BseX3I CGGCCG 1 cut(s) 15
BseYI CCCAGC 3 cut(s) 809, 2306, 2461
BsgI GTGCAG 1 cut(s) 966
Bsh1236I CGCG 2 cut(s) 41, 3068
Bsh1285I CGRYCG 2 cut(s) 18, 2961
BshFI GGCC 6 cut(s) 17, 1128, 1233, 1355, 2255, 2579
BsiEI CGRYCG 2 cut(s) 18, 2961
BsiHKAI GWGCWC 5 cut(s) 742, 1872, 2224, 2473, 2669
BsiHKCI CYCGRG 1 cut(s) 2914
BsiSI CCGG 5 cut(s) 14, 1164, 1960, 2383, 2702
BslFI GGGAC 8 cut(s) 683, 714, 1092, 1654, 2080, 2478, 2726, 2738
BslI CCNNNNNNNGG 5 cut(s) 403, 1080, 1135, 2574, 3026
BsmAI GTCTC 4 cut(s) 64, 299, 1216, 3175
BsmBI CGTCTC 1 cut(s) 64
BsmFI GGGAC 8 cut(s) 683, 714, 1092, 1654, 2080, 2478, 2726, 2738
BsmI GAATGC 3 cut(s) 984, 1015, 2049
BsnI GGCC 6 cut(s) 17, 1128, 1233, 1355, 2255, 2579
BsoBI CYCGRG 1 cut(s) 2914
Bsp1286I GDGCHC 8 cut(s) 742, 1068, 1872, 2224, 2473, 2669, 2800, 2808
Bsp13I TCCGGA 2 cut(s) 1959, 2382
Bsp1407I TGTACA 1 cut(s) 1740
Bsp19I CCATGG 1 cut(s) 2256
BspACI CCGC 9 cut(s) 41, 239, 264, 460, 827, 2022, 2893, 3035, 3053
BspANI GGCC 6 cut(s) 17, 1128, 1233, 1355, 2255, 2579
BspCNI CTCAG 5 cut(s) 43, 916, 2005, 3062, 3312
BspEI TCCGGA 2 cut(s) 1959, 2382
BspFNI CGCG 2 cut(s) 41, 3068
BspHI TCATGA 1 cut(s) 2964
BspLI GGNNCC 5 cut(s) 138, 395, 1354, 1968, 2578
BspMAI CTGCAG 2 cut(s) 145, 215
BspMI ACCTGC 2 cut(s) 766, 2224
BspTI CTTAAG 1 cut(s) 568
BsrBI CCGCTC 1 cut(s) 2893
BsrDI GCAATG 5 cut(s) 420, 1145, 1434, 1551, 2527
BsrGI TGTACA 1 cut(s) 1740
BssECI CCNNGG 8 cut(s) 12, 649, 1045, 1074, 1234, 1426, 1455, 2256
BssSI CACGAG 1 cut(s) 741
BssT1I CCWWGG 7 cut(s) 649, 1045, 1074, 1234, 1426, 1455, 2256
Bst2BI CACGAG 1 cut(s) 741
Bst2UI CCWGG 6 cut(s) 222, 287, 404, 1794, 2205, 2581
Bst6I CTCTTC 7 cut(s) 97, 186, 702, 1187, 2424, 2432, 3101
BstAFI CTTAAG 1 cut(s) 568
BstAPI GCANNNNNTGC 2 cut(s) 210, 2517
BstAUI TGTACA 1 cut(s) 1740
BstBAI YACGTR 1 cut(s) 1099
BstC8I GCNNGC 7 cut(s) 344, 436, 608, 1030, 1708, 1878, 2990
BstDEI CTNAG 9 cut(s) 51, 903, 1526, 2013, 2939, 3049, 3293, 3299, 3324
BstDSI CCRYGG 1 cut(s) 2256
BstF5I GGATG 7 cut(s) 346, 937, 1517, 1656, 1968, 2872, 3247
BstFNI CGCG 2 cut(s) 41, 3068
BstH2I RGCGCY 1 cut(s) 2135
BstHHI GCGC 4 cut(s) 41, 1201, 2134, 2266
BstMAI GTCTC 4 cut(s) 64, 299, 1216, 3175
BstMCI CGRYCG 2 cut(s) 18, 2961
BstNI CCWGG 6 cut(s) 222, 287, 404, 1794, 2205, 2581
BstNSI RCATGY 5 cut(s) 1399, 1747, 1880, 2032, 2600
BstPAI GACNNNNGTC 2 cut(s) 1208, 2618
BstSCI CCNGG 7 cut(s) 12, 220, 285, 402, 1792, 2203, 2579
BstSFI CTRYAG 5 cut(s) 141, 211, 259, 1500, 3058
BstSLI GKGCMC 2 cut(s) 1068, 1872
BstUI CGCG 2 cut(s) 41, 3068
BstV2I GAAGAC 4 cut(s) 631, 760, 957, 2175
BstX2I RGATCY 3 cut(s) 136, 207, 1825
BstXI CCANNNNNNTGG 1 cut(s) 1241
BstYI RGATCY 3 cut(s) 136, 207, 1825
BstZI CGGCCG 1 cut(s) 15
BsuI GTATCC 2 cut(s) 258, 2008
BsuRI GGCC 6 cut(s) 17, 1128, 1233, 1355, 2255, 2579
BtgI CCRYGG 1 cut(s) 2256
BtrI CACGTC 2 cut(s) 2468, 3305
BtsCI GGATG 7 cut(s) 346, 937, 1517, 1656, 1968, 2872, 3247
BtsI GCAGTG 1 cut(s) 1911
BveI ACCTGC 2 cut(s) 766, 2224
Cac8I GCNNGC 7 cut(s) 344, 436, 608, 1030, 1708, 1878, 2990
CaiI CAGNNNCTG 2 cut(s) 210, 2276
CciI TCATGA 1 cut(s) 2964
CfoI GCGC 4 cut(s) 41, 1201, 2134, 2266
Cfr13I GGNCC 9 cut(s) 986, 1127, 1231, 1353, 2082, 2243, 2253, 2380, 2577
CseI GACGC 1 cut(s) 944
Csp6I GTAC 8 cut(s) 169, 1393, 1514, 1679, 1741, 1889, 2368, 2936
CviQI GTAC 8 cut(s) 169, 1393, 1514, 1679, 1741, 1889, 2368, 2936
DdeI CTNAG 9 cut(s) 51, 903, 1526, 2013, 2939, 3049, 3293, 3299, 3324
EaeI YGGCCR 1 cut(s) 15
EagI CGGCCG 1 cut(s) 15
Eam1104I CTCTTC 7 cut(s) 97, 186, 702, 1187, 2424, 2432, 3101
EarI CTCTTC 7 cut(s) 97, 186, 702, 1187, 2424, 2432, 3101
Ecl136II GAGCTC 1 cut(s) 2667
EclXI CGGCCG 1 cut(s) 15
Eco130I CCWWGG 7 cut(s) 649, 1045, 1074, 1234, 1426, 1455, 2256
Eco24I GRGCYC 3 cut(s) 2669, 2800, 2808
Eco32I GATATC 1 cut(s) 3032
Eco47I GGWCC 4 cut(s) 986, 2082, 2243, 2380
Eco52I CGGCCG 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 2667
Eco57I CTGAAG 3 cut(s) 284, 1211, 2601
Eco72I CACGTG 1 cut(s) 1099
Eco88I CYCGRG 1 cut(s) 2914
EcoICRI GAGCTC 1 cut(s) 2667
EcoO109I RGGNCCY 3 cut(s) 1127, 1353, 2243
EcoRII CCWGG 6 cut(s) 220, 285, 402, 1792, 2203, 2579
EcoRV GATATC 1 cut(s) 3032
EcoT14I CCWWGG 7 cut(s) 649, 1045, 1074, 1234, 1426, 1455, 2256
EcoT22I ATGCAT 1 cut(s) 2051
EcoT38I GRGCYC 3 cut(s) 2669, 2800, 2808
ErhI CCWWGG 7 cut(s) 649, 1045, 1074, 1234, 1426, 1455, 2256
Esp3I CGTCTC 1 cut(s) 64
FalI AAGNNNNNCTT 2 cut(s) 382, 414
FaqI GGGAC 8 cut(s) 683, 714, 1092, 1654, 2080, 2478, 2726, 2738
FauI CCCGC 2 cut(s) 2029, 2886
FauNDI CATATG 3 cut(s) 2551, 2684, 2850
FbaI TGATCA 1 cut(s) 1566
FblI GTMKAC 1 cut(s) 3057
FokI GGATG 7 cut(s) 333, 944, 1504, 1663, 1975, 2879, 3254
FriOI GRGCYC 3 cut(s) 2669, 2800, 2808
FspBI CTAG 6 cut(s) 843, 1025, 1122, 1224, 1631, 2829
GlaI GCGC 4 cut(s) 40, 1200, 2133, 2265
GsaI CCCAGC 3 cut(s) 813, 2310, 2465
GsuI CTGGAG 3 cut(s) 807, 1815, 2896
HaeII RGCGCY 1 cut(s) 2135
HaeIII GGCC 6 cut(s) 17, 1128, 1233, 1355, 2255, 2579
HapII CCGG 5 cut(s) 14, 1164, 1960, 2383, 2702
HgaI GACGC 1 cut(s) 944
HhaI GCGC 4 cut(s) 41, 1201, 2134, 2266
Hin6I GCGC 4 cut(s) 39, 1199, 2132, 2264
HinP1I GCGC 4 cut(s) 39, 1199, 2132, 2264
HincII GTYRAC 2 cut(s) 1279, 2317
HindII GTYRAC 2 cut(s) 1279, 2317
HindIII AAGCTT 3 cut(s) 432, 1361, 3321
HpaII CCGG 5 cut(s) 14, 1164, 1960, 2383, 2702
Hpy166II GTNNAC 9 cut(s) 283, 727, 1279, 1870, 2115, 2201, 2317, 3046, 3058
Hpy8I GTNNAC 9 cut(s) 283, 727, 1279, 1870, 2115, 2201, 2317, 3046, 3058
Hpy99I CGWCG 1 cut(s) 154
HpyCH4IV ACGT 6 cut(s) 171, 198, 954, 1098, 2467, 3304
HpyF3I CTNAG 9 cut(s) 51, 903, 1526, 2013, 2939, 3049, 3293, 3299, 3324
HpySE526I ACGT 6 cut(s) 171, 198, 954, 1098, 2467, 3304
HspAI GCGC 4 cut(s) 39, 1199, 2132, 2264
Kpn2I TCCGGA 2 cut(s) 1959, 2382
Ksp22I TGATCA 1 cut(s) 1566
LmnI GCTCC 5 cut(s) 388, 399, 653, 1298, 1972
MaeI CTAG 6 cut(s) 843, 1025, 1122, 1224, 1631, 2829
MaeII ACGT 6 cut(s) 171, 198, 954, 1098, 2467, 3304
MaeIII GTNAC 1 cut(s) 2413
MbiI CCGCTC 1 cut(s) 2893
MflI RGATCY 3 cut(s) 136, 207, 1825
MhlI GDGCHC 8 cut(s) 742, 1068, 1872, 2224, 2473, 2669, 2800, 2808
MlyI GAGTC 3 cut(s) 1161, 2410, 2760
MmeI TCCRAC 8 cut(s) 855, 909, 955, 1456, 1711, 2025, 2218, 3158
Mph1103I ATGCAT 1 cut(s) 2051
MroI TCCGGA 2 cut(s) 1959, 2382
MroXI GAANNNNTTC 2 cut(s) 861, 954
MseI TTAA 6 cut(s) 309, 569, 665, 2091, 2141, 2628
MslI CAYNNNNRTG 5 cut(s) 425, 1265, 1742, 1875, 2702
MspA1I CMGCKG 1 cut(s) 3053
MspCI CTTAAG 1 cut(s) 568
MspI CCGG 5 cut(s) 14, 1164, 1960, 2383, 2702
MspR9I CCNGG 7 cut(s) 14, 222, 287, 404, 1794, 2205, 2581
Mva1269I GAATGC 3 cut(s) 984, 1015, 2049
MvaI CCWGG 6 cut(s) 222, 287, 404, 1794, 2205, 2581
MvnI CGCG 2 cut(s) 41, 3068
NciI CCSGG 1 cut(s) 14
NcoI CCATGG 1 cut(s) 2256
NdeI CATATG 3 cut(s) 2551, 2684, 2850
NlaIV GGNNCC 5 cut(s) 138, 395, 1354, 1968, 2578
NmuCI GTSAC 1 cut(s) 2413
NsiI ATGCAT 1 cut(s) 2051
NspI RCATGY 5 cut(s) 1399, 1747, 1880, 2032, 2600
PaeI GCATGC 1 cut(s) 1880
PaeR7I CTCGAG 1 cut(s) 2914
PagI TCATGA 1 cut(s) 2964
PciI ACATGT 2 cut(s) 1395, 1743
PctI GAATGC 3 cut(s) 984, 1015, 2049
PdmI GAANNNNTTC 2 cut(s) 861, 954
PfeI GAWTC 9 cut(s) 20, 103, 778, 850, 1444, 1734, 2017, 2357, 3063
PfoI TCCNGGA 2 cut(s) 402, 1792
Ple19I CGATCG 1 cut(s) 2961
PleI GAGTC 3 cut(s) 1161, 2410, 2759
PmaCI CACGTG 1 cut(s) 1099
PmlI CACGTG 1 cut(s) 1099
PpsI GAGTC 3 cut(s) 1161, 2410, 2759
Ppu21I YACGTR 1 cut(s) 1099
PpuMI RGGWCCY 1 cut(s) 2243
PscI ACATGT 2 cut(s) 1395, 1743
PshAI GACNNNNGTC 2 cut(s) 1208, 2618
Psp124BI GAGCTC 1 cut(s) 2669
Psp5II RGGWCCY 1 cut(s) 2243
Psp6I CCWGG 6 cut(s) 220, 285, 402, 1792, 2203, 2579
PspCI CACGTG 1 cut(s) 1099
PspFI CCCAGC 3 cut(s) 809, 2306, 2461
PspGI CCWGG 6 cut(s) 220, 285, 402, 1792, 2203, 2579
PspN4I GGNNCC 5 cut(s) 138, 395, 1354, 1968, 2578
PspPI GGNCC 9 cut(s) 986, 1127, 1231, 1353, 2082, 2243, 2253, 2380, 2577
PspPPI RGGWCCY 1 cut(s) 2243
PstI CTGCAG 2 cut(s) 145, 215
PstNI CAGNNNCTG 2 cut(s) 210, 2276
PsuI RGATCY 3 cut(s) 136, 207, 1825
PvuI CGATCG 1 cut(s) 2961
RsaI GTAC 8 cut(s) 170, 1394, 1515, 1680, 1742, 1890, 2369, 2937
RsaNI GTAC 8 cut(s) 169, 1393, 1514, 1679, 1741, 1889, 2368, 2936
RseI CAYNNNNRTG 5 cut(s) 425, 1265, 1742, 1875, 2702
SacI GAGCTC 1 cut(s) 2669
SaqAI TTAA 6 cut(s) 309, 569, 665, 2091, 2141, 2628
Sau96I GGNCC 9 cut(s) 986, 1127, 1231, 1353, 2082, 2243, 2253, 2380, 2577
SchI GAGTC 3 cut(s) 1161, 2410, 2760
ScrFI CCNGG 7 cut(s) 14, 222, 287, 404, 1794, 2205, 2581
SduI GDGCHC 8 cut(s) 742, 1068, 1872, 2224, 2473, 2669, 2800, 2808
SfcI CTRYAG 5 cut(s) 141, 211, 259, 1500, 3058
Sfr274I CTCGAG 1 cut(s) 2914
SinI GGWCC 4 cut(s) 986, 2082, 2243, 2380
SlaI CTCGAG 1 cut(s) 2914
SmiMI CAYNNNNRTG 5 cut(s) 425, 1265, 1742, 1875, 2702
SmlI CTYRAG 3 cut(s) 568, 896, 2914
SmoI CTYRAG 3 cut(s) 568, 896, 2914
SphI GCATGC 1 cut(s) 1880
SsiI CCGC 9 cut(s) 41, 239, 264, 460, 827, 2022, 2893, 3035, 3053
SspI AATATT 1 cut(s) 1183
SspMI CTAG 6 cut(s) 843, 1025, 1122, 1224, 1631, 2829
SstI GAGCTC 1 cut(s) 2669
StyD4I CCNGG 7 cut(s) 12, 220, 285, 402, 1792, 2203, 2579
StyI CCWWGG 7 cut(s) 649, 1045, 1074, 1234, 1426, 1455, 2256
TaiI ACGT 6 cut(s) 174, 201, 957, 1101, 2470, 3307
TaqI TCGA 9 cut(s) 149, 164, 1214, 1447, 1593, 1777, 2064, 2592, 2915
TatI WGTACW 1 cut(s) 1740
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 9 cut(s) 20, 103, 778, 850, 1444, 1734, 2017, 2357, 3063
Tru1I TTAA 6 cut(s) 309, 569, 665, 2091, 2141, 2628
Tru9I TTAA 6 cut(s) 309, 569, 665, 2091, 2141, 2628
TseFI GTSAC 1 cut(s) 2413
Tsp45I GTSAC 1 cut(s) 2413
TspGWI ACGGA 7 cut(s) 61, 240, 375, 1096, 1296, 2291, 3143
Vha464I CTTAAG 1 cut(s) 568
VneI GTGCAC 1 cut(s) 1868
VpaK11BI GGWCC 4 cut(s) 986, 2082, 2243, 2380
XapI RAATTY 2 cut(s) 275, 1216
XceI RCATGY 5 cut(s) 1399, 1747, 1880, 2032, 2600
XhoI CTCGAG 1 cut(s) 2914
XmiI GTMKAC 1 cut(s) 3057
XmnI GAANNNNTTC 2 cut(s) 861, 954
XspI CTAG 6 cut(s) 843, 1025, 1122, 1224, 1631, 2829
Zsp2I ATGCAT 1 cut(s) 2051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.