Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009109

Physical Location & Seq

Genomic Coordinates Forward (+)

11023487 .. 11026731

Gene Structure 3245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g08410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1917 bp

ATGGAGATCGCCCCGGCCCTGCCGCCGTCCGCTGACCGGGACATCCCAATCGATACCGGTAAGACGTCGTCGTCTCAGGAGAACGAAGCGAGAGCCGCGGCGGCGGCGACGACGACGACCTCGTCTTCGTCGGTGGCGGTCAAGTACGACGATGAGGAAGAGGAGGAGGACGTGTGCCGGATCTGTAGAAACCCGGGCGACGCCGATAACCCGCTCCGGTACCCGTGCGCTTGTAGCGGAAGCATCAAATTTGTCCACCAGGATTGCCTCCTGCAGTGGCTCAATCACAGCAATGCTCGCCAATGCGAGGTTTGCAAGCATGCATTTTCGTTCTCTCCGGTTTATGCTGAGAATGCCCCTGCAAGGCTTCCTTTTCAAGAGTTTGTAGTTGGGATGGCAATGAAAACTTGCCATGTTCTGCAATTCTTTCTGCGCCTTGGTTTTGTGCTTTCTGTTTGGCTCCTCATTATACCTTTTATTACATTTTGGATATGGCGGTTGGCTTTTGTGAGGAGTTTTGGTGAAGCTCAGAGATTATTCCTTAGTCATTTATCCACTACAGTAATCCTTACCGATTGTCTGCATGGGTTCCTACTTTCTGCTAGCATTGTGTTTATTTTTCTCGGGGCCACTTCTCTGAGGGATTACTTCAGGCATTTACGTGAGCTAGGAGGACAGGATGCTGACAGAGAAGATGAAGGGGAAAGAAATGGTGCCCGTCCTGCAAGGAGAGCTCCTGGACAAGCTAACAGGAACTTTGTTGGTGATGTGAATGGGGAAGATGCTGCTGGAGCACAAGGGATTGCTGGAGCAGGTCAAATGATTAGAAGGAATGCAGAAAATGTTGCTGCTCGGTGGGAGATGCAGGCAGCTCGTCTTGAGGCTCATGTGGAACAGATGTTTGATGGTCTGGATGATGCTGATGGCGCTGAGGATGTACCGTTTGATGAGCTCGTTGGCATGCAGGGACCTGTATTTCATTTAGTTGAAAATGCATTCACTGTTCTGGCCAGCAATATGATATTCCTTGGCGTAGTAATCTTTGTGCCTTTCTCAATTGGTCGGATAATACTCTATCATTTGTCTTGGCTTTTCTCCACTGCTACTCGTCCAGTATTGTCAACGGTCATGCCACTCACAGAGTCAGCCCTTTCCTTGGCAAATGTGACATTGAAGAATGCATTAACGGCCGTAACAAATTTATCATCTGAAAGCCAACAAAGCGGTATGGTCAGCCAGGTTGAAGAGACCCTGAAAGCAAACATGAGTGGACTAAATGAGGTAGCAAACAATATAAGTTCACCACTTTCAGCAGACTTCCTGAAAGGGGCAACGCTTGGGACATCAAGGCTGTCTGATGTTACAACTCTTGCTATTGGATACATGTTTATATTCTCCCTAGTTTTCTTCTACCTTGGCATTGTTGCTTTGATTCGGTACACTAGAGGTGAGCCATTGACTTTGGGAAGGTTCTATGGTATTGCTTCTATGGCAGAGACAATTCCATCTCTCTTCAGGCAGTTCTTGGCAGCAATGAGGCATTTGATGACTATGATTAAGGTTGCATTTCTTCTAGTCATTGAACTGGGGGTATTTCCATTGATGTGTGGATGGTGGCTAGATGTTTGCACAATAAGGATGTTTGGGAAGTCCATGTCTCACAGGGTTCAGTTCTTCTCAGCATCTCCCTTAGCCAGTTCACTGGTCCATTGGGTTGTTGGAATTGTATACATGCTACAAATAAGCATATTCGTCAGTCTTCTTCGAGGGGTTCTGCGTAATGGAGTTCTTTATTTCCTTAGAGATCGATCTGATCCAAACTACAATCCCTTCCGCGATCTTAATGATCGATCCGGTGCACAAACATGCTCGCAGGGTCCTGTTATCTGTTGCGGTGGTGTCGGACCCATTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0001101 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006720 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009698 GO:0009699 GO:0009893 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010243 GO:0010345 GO:0010498 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030176 GO:0030433 GO:0031224 GO:0031227 GO:0031624 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042175 GO:0042221 GO:0042335 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0048518 GO:0048856 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0051603 GO:0051716 GO:0065007 GO:0065009 GO:0070647 GO:0070936 GO:0071704 GO:0098827 GO:0140096 GO:1900490 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901568 GO:1901570 GO:1901575 GO:1901576 GO:1901698 GO:1901700 GO:1990381 GO:2001215

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

RINGv

Protein Analysis

639

Amino Acids

70.32

Weight (kDa)

5.68

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34100 AT4G34100
fragaria_vesca	FvH4_2g05730 FvH4_2g05730
malus_domestica	MD00G1138200.v1.1 MD05G1085000.v1.1
prunus_persica	Prupe.8G129300_v2.0.a1
pyrus_communis	pycom05g08410 pycom10g07980
rosa_chinensis	RchiOBHm_Chr6g0256621
rosa_laevigata	RLG00000014749
rosa_multiflora	Rmu_sc0003012.1_g000002 Rmu_sc0024605.1_g000001
rosa_roxburghii	Rroxscaffold_7G00209160
rosa_rugosa	Rorug05G0564900 Rorug05G0564900 Rorug05G0565000
rosa_samantha	Rh6AG082900 Rh6BG077500 Rh6CG072100 Rh6DG069300
rosa_wichuraiana	Rw6G007480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	70, 121
AatII	GACGTC	1 cut(s)	68
Acc36I	ACCTGC	1 cut(s)	803
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	2 cut(s)	219, 713
AccBSI	CCGCTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	1728
AccII	CGCG	2 cut(s)	98, 1836
AclWI	GGATC	3 cut(s)	188, 1808, 1845
AcoI	YGGCCR	2 cut(s)	1008, 1188
AcsI	RAATTY	2 cut(s)	248, 1198
AcuI	CTGAAG	2 cut(s)	634, 1498
AcyI	GRCGYC	2 cut(s)	65, 201
AfaI	GTAC	4 cut(s)	146, 221, 939, 1439
AfiI	CCNNNNNNNGG	5 cut(s)	36, 307, 363, 1156, 1327
AflIII	ACRYGT	2 cut(s)	171, 1383
AgeI	ACCGGT	1 cut(s)	56
AgsI	TTSAA	5 cut(s)	377, 989, 1174, 1244, 1583
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	3 cut(s)	258, 736, 1236
AluBI	AGCT	6 cut(s)	527, 667, 734, 746, 872, 952
AluI	AGCT	6 cut(s)	527, 667, 734, 746, 872, 952
Alw21I	GWGCWC	4 cut(s)	736, 796, 954, 1861
Alw26I	GTCTC	4 cut(s)	78, 1241, 1490, 1662
Alw44I	GTGCAC	1 cut(s)	1857
AlwI	GGATC	3 cut(s)	188, 1808, 1845
Ama87I	CYCGRG	2 cut(s)	193, 623
AoxI	GGCC	4 cut(s)	15, 627, 1008, 1188
ApaLI	GTGCAC	1 cut(s)	1857
ApeKI	GCWGC	4 cut(s)	785, 848, 869, 1529
ApoI	RAATTY	2 cut(s)	248, 1198
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
AsiGI	ACCGGT	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	219
AspLEI	GCGC	3 cut(s)	230, 435, 929
AspS9I	GGNCC	6 cut(s)	16, 627, 968, 1705, 1877, 1904
AsuC2I	CCSGG	4 cut(s)	14, 38, 194, 195
AsuHPI	GGTGA	4 cut(s)	533, 776, 1293, 1460
AsuNHI	GCTAGC	1 cut(s)	602
AvaI	CYCGRG	2 cut(s)	193, 623
AvaII	GGWCC	4 cut(s)	968, 1705, 1877, 1904
BaeGI	GKGCMC	2 cut(s)	718, 1861
BalI	TGGCCA	1 cut(s)	1010
BanI	GGYRCC	2 cut(s)	219, 713
BanII	GRGCYC	2 cut(s)	736, 954
BbsI	GAAGAC	2 cut(s)	117, 1751
Bbv12I	GWGCWC	4 cut(s)	736, 796, 954, 1861
BbvCI	CCTCAGC	1 cut(s)	930
BbvI	GCAGC	4 cut(s)	772, 835, 881, 1541
BccI	CCATC	5 cut(s)	388, 899, 917, 1513, 1605
BceAI	ACGGC	3 cut(s)	10, 1175, 1203
BcgI	CGANNNNNNTGC	2 cut(s)	854, 888
BciT130I	CCWGG	3 cut(s)	260, 738, 1238
BciVI	GTATCC	1 cut(s)	1373
BcnI	CCSGG	4 cut(s)	14, 38, 194, 195
BcoDI	GTCTC	4 cut(s)	78, 1241, 1490, 1662
BfaI	CTAG	6 cut(s)	603, 668, 1400, 1443, 1574, 1619
BfmI	CTRYAG	3 cut(s)	184, 272, 558
BfoI	RGCGCY	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	803
BfuI	GTATCC	1 cut(s)	1373
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	9 cut(s)	23, 96, 99, 102, 105, 786, 849, 870, 1530
BlsI	GCNGC	9 cut(s)	24, 97, 100, 103, 106, 787, 850, 871, 1531
Bme1390I	CCNGG	7 cut(s)	14, 38, 194, 195, 260, 738, 1238
Bme18I	GGWCC	4 cut(s)	968, 1705, 1877, 1904
BmeT110I	CYCGRG	2 cut(s)	193, 623
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	6 cut(s)	16, 627, 968, 1705, 1877, 1904
BmiI	GGNNCC	8 cut(s)	221, 461, 590, 628, 715, 969, 1878, 1906
BmrFI	CCNGG	7 cut(s)	14, 38, 194, 195, 260, 738, 1238
BmrI	ACTGGG	1 cut(s)	1595
BmsI	GCATC	6 cut(s)	252, 670, 772, 852, 907, 1691
BmtI	GCTAGC	1 cut(s)	606
BmuI	ACTGGG	1 cut(s)	1595
BpiI	GAAGAC	2 cut(s)	117, 1751
BpmI	CTGGAG	2 cut(s)	810, 828
Bpu10I	CCTNAGC	2 cut(s)	930, 1690
BpuEI	CTTGAG	1 cut(s)	899
BpuMI	CCSGG	4 cut(s)	14, 38, 194, 195
Bsa29I	ATCGAT	3 cut(s)	51, 1807, 1849
BsaAI	YACGTR	1 cut(s)	662
BsaHI	GRCGYC	2 cut(s)	65, 201
BsaI	GGTCTC	1 cut(s)	1241
BsaJI	CCNNGG	7 cut(s)	12, 96, 193, 436, 1027, 1155, 1414
BsaWI	WCCGGW	4 cut(s)	56, 216, 337, 1853
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 505, 535
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 307, 363, 1156, 1327
Bse118I	RCCGGY	1 cut(s)	56
Bse1I	ACTGG	4 cut(s)	1112, 1590, 1695, 1707
Bse3DI	GCAATG	3 cut(s)	298, 405, 1539
BseBI	CCWGG	3 cut(s)	260, 738, 1238
BseCI	ATCGAT	3 cut(s)	51, 1807, 1849
BseDI	CCNNGG	7 cut(s)	12, 96, 193, 436, 1027, 1155, 1414
BseGI	GGATG	7 cut(s)	42, 399, 685, 919, 940, 1616, 1644
BseLI	CCNNNNNNNGG	5 cut(s)	36, 307, 363, 1156, 1327
BseMI	GCAATG	3 cut(s)	298, 405, 1539
BseMII	CTCAG	6 cut(s)	89, 339, 542, 629, 921, 1692
BseNI	ACTGG	4 cut(s)	1112, 1590, 1695, 1707
BseRI	GAGGAG	4 cut(s)	176, 179, 452, 526
BseSI	GKGCMC	2 cut(s)	718, 1861
BseX3I	CGGCCG	1 cut(s)	1188
BseXI	GCAGC	4 cut(s)	772, 835, 881, 1541
Bsh1236I	CGCG	2 cut(s)	98, 1836
Bsh1285I	CGRYCG	1 cut(s)	1191
BshFI	GGCC	4 cut(s)	17, 629, 1010, 1190
BshNI	GGYRCC	2 cut(s)	219, 713
BshTI	ACCGGT	1 cut(s)	56
BshVI	ATCGAT	3 cut(s)	51, 1807, 1849
BsiEI	CGRYCG	1 cut(s)	1191
BsiHKAI	GWGCWC	4 cut(s)	736, 796, 954, 1861
BsiHKCI	CYCGRG	2 cut(s)	193, 623
BsiSI	CCGG	8 cut(s)	14, 37, 57, 178, 194, 217, 338, 1854
BslFI	GGGAC	3 cut(s)	53, 981, 1354
BslI	CCNNNNNNNGG	5 cut(s)	36, 307, 363, 1156, 1327
BsmAI	GTCTC	4 cut(s)	78, 1241, 1490, 1662
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	53, 981, 1354
BsmI	GAATGC	4 cut(s)	358, 838, 995, 1183
BsnI	GGCC	4 cut(s)	17, 629, 1010, 1190
Bso31I	GGTCTC	1 cut(s)	1241
BsoBI	CYCGRG	2 cut(s)	193, 623
Bsp1286I	GDGCHC	5 cut(s)	718, 736, 796, 954, 1861
Bsp143I	GATC	8 cut(s)	6, 180, 1804, 1808, 1813, 1837, 1846, 1850
BspANI	GGCC	4 cut(s)	17, 629, 1010, 1190
BspCNI	CTCAG	6 cut(s)	88, 340, 541, 630, 922, 1691
BspDI	ATCGAT	3 cut(s)	51, 1807, 1849
BspFNI	CGCG	2 cut(s)	98, 1836
BspLI	GGNNCC	8 cut(s)	221, 461, 590, 628, 715, 969, 1878, 1906
BspMAI	CTGCAG	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	803
BspOI	GCTAGC	1 cut(s)	606
BspPI	GGATC	3 cut(s)	188, 1808, 1845
BspT107I	GGYRCC	2 cut(s)	219, 713
BspTNI	GGTCTC	1 cut(s)	1241
BsrBI	CCGCTC	1 cut(s)	214
BsrDI	GCAATG	3 cut(s)	298, 405, 1539
BsrFI	RCCGGY	1 cut(s)	56
BsrI	ACTGG	4 cut(s)	1112, 1590, 1695, 1707
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	7 cut(s)	12, 96, 193, 436, 1027, 1155, 1414
BssMI	GATC	8 cut(s)	6, 180, 1804, 1808, 1813, 1837, 1846, 1850
BssNAI	GTATAC	1 cut(s)	1729
BssNI	GRCGYC	2 cut(s)	65, 201
BssT1I	CCWWGG	4 cut(s)	436, 1027, 1155, 1414
Bst1107I	GTATAC	1 cut(s)	1729
Bst2UI	CCWGG	3 cut(s)	260, 738, 1238
Bst4CI	ACNGT	4 cut(s)	562, 942, 1003, 1126
Bst6I	CTCTTC	3 cut(s)	153, 1239, 1517
BstACI	GRCGYC	2 cut(s)	65, 201
BstBAI	YACGTR	1 cut(s)	662
BstC8I	GCNNGC	8 cut(s)	298, 317, 321, 604, 867, 962, 1012, 1871
BstDEI	CTNAG	9 cut(s)	75, 348, 528, 542, 638, 930, 1678, 1690, 1799
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	7 cut(s)	42, 399, 685, 919, 940, 1616, 1644
BstFNI	CGCG	2 cut(s)	98, 1836
BstH2I	RGCGCY	1 cut(s)	930
BstHHI	GCGC	3 cut(s)	230, 435, 929
BstKTI	GATC	8 cut(s)	9, 183, 1807, 1811, 1816, 1840, 1849, 1853
BstMAI	GTCTC	4 cut(s)	78, 1241, 1490, 1662
BstMBI	GATC	8 cut(s)	6, 180, 1804, 1808, 1813, 1837, 1846, 1850
BstMCI	CGRYCG	1 cut(s)	1191
BstNI	CCWGG	3 cut(s)	260, 738, 1238
BstNSI	RCATGY	5 cut(s)	323, 964, 1387, 1735, 1869
BstSCI	CCNGG	7 cut(s)	12, 36, 192, 193, 258, 736, 1236
BstSFI	CTRYAG	3 cut(s)	184, 272, 558
BstSLI	GKGCMC	2 cut(s)	718, 1861
BstUI	CGCG	2 cut(s)	98, 1836
BstV1I	GCAGC	4 cut(s)	772, 835, 881, 1541
BstV2I	GAAGAC	2 cut(s)	117, 1751
BstX2I	RGATCY	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	1702
BstYI	RGATCY	1 cut(s)	180
BstZ17I	GTATAC	1 cut(s)	1729
BstZI	CGGCCG	1 cut(s)	1188
Bsu15I	ATCGAT	3 cut(s)	51, 1807, 1849
BsuI	GTATCC	1 cut(s)	1373
BsuRI	GGCC	4 cut(s)	17, 629, 1010, 1190
BsuTUI	ATCGAT	3 cut(s)	51, 1807, 1849
BtgI	CCRYGG	1 cut(s)	96
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	7 cut(s)	42, 399, 685, 919, 940, 1616, 1644
BtsI	GCAGTG	2 cut(s)	281, 1098
BtsIMutI	CAGTG	4 cut(s)	281, 999, 1098, 1700
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	8 cut(s)	298, 317, 321, 604, 867, 962, 1012, 1871
CfoI	GCGC	3 cut(s)	230, 435, 929
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	6 cut(s)	16, 627, 968, 1705, 1877, 1904
Cfr42I	CCGCGG	1 cut(s)	99
Cfr9I	CCCGGG	1 cut(s)	193
ClaI	ATCGAT	3 cut(s)	51, 1807, 1849
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	4 cut(s)	145, 220, 938, 1438
CspAI	ACCGGT	1 cut(s)	56
CspCI	CAANNNNNGTGG	2 cut(s)	245, 280
CviQI	GTAC	4 cut(s)	145, 220, 938, 1438
DdeI	CTNAG	9 cut(s)	75, 348, 528, 542, 638, 930, 1678, 1690, 1799
DpnI	GATC	8 cut(s)	8, 182, 1806, 1810, 1815, 1839, 1848, 1852
DpnII	GATC	8 cut(s)	6, 180, 1804, 1808, 1813, 1837, 1846, 1850
DrdI	GACNNNNNNGTC	2 cut(s)	70, 121
DseDI	GACNNNNNNGTC	2 cut(s)	70, 121
EaeI	YGGCCR	2 cut(s)	1008, 1188
EagI	CGGCCG	1 cut(s)	1188
Eam1104I	CTCTTC	3 cut(s)	153, 1239, 1517
EarI	CTCTTC	3 cut(s)	153, 1239, 1517
Ecl136II	GAGCTC	2 cut(s)	734, 952
EclXI	CGGCCG	1 cut(s)	1188
Eco130I	CCWWGG	4 cut(s)	436, 1027, 1155, 1414
Eco24I	GRGCYC	2 cut(s)	736, 954
Eco31I	GGTCTC	1 cut(s)	1241
Eco47I	GGWCC	4 cut(s)	968, 1705, 1877, 1904
Eco52I	CGGCCG	1 cut(s)	1188
Eco53kI	GAGCTC	2 cut(s)	734, 952
Eco57I	CTGAAG	2 cut(s)	634, 1498
Eco88I	CYCGRG	2 cut(s)	193, 623
EcoICRI	GAGCTC	2 cut(s)	734, 952
EcoO109I	RGGNCCY	2 cut(s)	968, 1877
EcoRII	CCWGG	3 cut(s)	258, 736, 1236
EcoT14I	CCWWGG	4 cut(s)	436, 1027, 1155, 1414
EcoT22I	ATGCAT	3 cut(s)	325, 997, 1183
EcoT38I	GRGCYC	2 cut(s)	736, 954
ErhI	CCWWGG	4 cut(s)	436, 1027, 1155, 1414
Esp3I	CGTCTC	1 cut(s)	78
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	3 cut(s)	53, 981, 1354
FauI	CCCGC	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	1728
Fnu4HI	GCNGC	9 cut(s)	23, 96, 99, 102, 105, 786, 849, 870, 1530
FokI	GGATG	7 cut(s)	29, 406, 692, 926, 947, 1623, 1651
FriOI	GRGCYC	2 cut(s)	736, 954
Fsp4HI	GCNGC	9 cut(s)	23, 96, 99, 102, 105, 786, 849, 870, 1530
FspBI	CTAG	6 cut(s)	603, 668, 1400, 1443, 1574, 1619
GlaI	GCGC	3 cut(s)	229, 434, 928
GluI	GCNGC	9 cut(s)	23, 96, 99, 102, 105, 786, 849, 870, 1530
GsuI	CTGGAG	2 cut(s)	810, 828
HaeII	RGCGCY	1 cut(s)	930
HaeIII	GGCC	4 cut(s)	17, 629, 1010, 1190
HapII	CCGG	8 cut(s)	14, 37, 57, 178, 194, 217, 338, 1854
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	3 cut(s)	230, 435, 929
Hin1I	GRCGYC	2 cut(s)	65, 201
Hin6I	GCGC	3 cut(s)	228, 433, 927
HinP1I	GCGC	3 cut(s)	228, 433, 927
HincII	GTYRAC	1 cut(s)	1122
HindII	GTYRAC	1 cut(s)	1122
HinfI	GANTC	2 cut(s)	1142, 1432
HpaII	CCGG	8 cut(s)	14, 37, 57, 178, 194, 217, 338, 1854
HphI	GGTGA	4 cut(s)	533, 776, 1293, 1460
Hpy166II	GTNNAC	8 cut(s)	256, 1122, 1271, 1301, 1440, 1700, 1729, 1859
Hpy188I	TCNGA	7 cut(s)	531, 639, 1065, 1210, 1357, 1813, 1904
Hpy188III	TCNNGA	5 cut(s)	77, 377, 878, 911, 1321
Hpy8I	GTNNAC	8 cut(s)	256, 1122, 1271, 1301, 1440, 1700, 1729, 1859
Hpy99I	CGWCG	8 cut(s)	70, 73, 112, 115, 118, 133, 152, 203
HpyAV	CCTTC	4 cut(s)	692, 822, 1461, 1840
HpyCH4III	ACNGT	4 cut(s)	562, 942, 1003, 1126
HpyCH4IV	ACGT	3 cut(s)	65, 171, 661
HpyF3I	CTNAG	9 cut(s)	75, 348, 528, 542, 638, 930, 1678, 1690, 1799
HpySE526I	ACGT	3 cut(s)	65, 171, 661
Hsp92I	GRCGYC	2 cut(s)	65, 201
HspAI	GCGC	3 cut(s)	228, 433, 927
KpnI	GGTACC	1 cut(s)	223
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	8 cut(s)	6, 180, 1804, 1808, 1813, 1837, 1846, 1850
LmnI	GCTCC	5 cut(s)	219, 465, 739, 791, 809
Lsp1109I	GCAGC	4 cut(s)	772, 835, 881, 1541
LweI	GCATC	6 cut(s)	252, 670, 772, 852, 907, 1691
MaeI	CTAG	6 cut(s)	603, 668, 1400, 1443, 1574, 1619
MaeII	ACGT	3 cut(s)	65, 171, 661
MaeIII	GTNAC	3 cut(s)	1165, 1192, 1360
MalI	GATC	8 cut(s)	8, 182, 1806, 1810, 1815, 1839, 1848, 1852
MbiI	CCGCTC	1 cut(s)	214
MboI	GATC	8 cut(s)	6, 180, 1804, 1808, 1813, 1837, 1846, 1850
MfeI	CAATTG	1 cut(s)	1056
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	5 cut(s)	718, 736, 796, 954, 1861
MlsI	TGGCCA	1 cut(s)	1010
MluCI	AATT	6 cut(s)	248, 422, 1056, 1198, 1500, 1722
MluNI	TGGCCA	1 cut(s)	1010
MlyI	GAGTC	1 cut(s)	1151
MmeI	TCCRAC	3 cut(s)	1043, 1699, 1882
Mox20I	TGGCCA	1 cut(s)	1010
Mph1103I	ATGCAT	3 cut(s)	325, 997, 1183
MscI	TGGCCA	1 cut(s)	1010
MseI	TTAA	3 cut(s)	1184, 1557, 1842
MslI	CAYNNNNRTG	4 cut(s)	291, 660, 1603, 1864
Msp20I	TGGCCA	1 cut(s)	1010
MspA1I	CMGCKG	2 cut(s)	32, 98
MspI	CCGG	8 cut(s)	14, 37, 57, 178, 194, 217, 338, 1854
MspR9I	CCNGG	7 cut(s)	14, 38, 194, 195, 260, 738, 1238
MunI	CAATTG	1 cut(s)	1056
Mva1269I	GAATGC	4 cut(s)	358, 838, 995, 1183
MvaI	CCWGG	3 cut(s)	260, 738, 1238
MvnI	CGCG	2 cut(s)	98, 1836
NciI	CCSGG	4 cut(s)	14, 38, 194, 195
NdeII	GATC	8 cut(s)	6, 180, 1804, 1808, 1813, 1837, 1846, 1850
NheI	GCTAGC	1 cut(s)	602
NlaIV	GGNNCC	8 cut(s)	221, 461, 590, 628, 715, 969, 1878, 1906
NmuCI	GTSAC	1 cut(s)	1165
NsiI	ATGCAT	3 cut(s)	325, 997, 1183
NspI	RCATGY	5 cut(s)	323, 964, 1387, 1735, 1869
PaeI	GCATGC	2 cut(s)	323, 964
PciI	ACATGT	1 cut(s)	1383
PcsI	WCGNNNNNNNCGW	1 cut(s)	119
PctI	GAATGC	4 cut(s)	358, 838, 995, 1183
PfeI	GAWTC	1 cut(s)	1432
PflFI	GACNNNGTC	2 cut(s)	67, 121
PfoI	TCCNGGA	1 cut(s)	736
PinAI	ACCGGT	1 cut(s)	56
PkrI	GCNGC	9 cut(s)	24, 97, 100, 103, 106, 787, 850, 871, 1531
PleI	GAGTC	1 cut(s)	1150
PpsI	GAGTC	1 cut(s)	1150
Ppu21I	YACGTR	1 cut(s)	662
PpuMI	RGGWCCY	2 cut(s)	968, 1877
PscI	ACATGT	1 cut(s)	1383
Psp124BI	GAGCTC	2 cut(s)	736, 954
Psp5II	RGGWCCY	2 cut(s)	968, 1877
Psp6I	CCWGG	3 cut(s)	258, 736, 1236
PspGI	CCWGG	3 cut(s)	258, 736, 1236
PspN4I	GGNNCC	8 cut(s)	221, 461, 590, 628, 715, 969, 1878, 1906
PspPI	GGNCC	6 cut(s)	16, 627, 968, 1705, 1877, 1904
PspPPI	RGGWCCY	2 cut(s)	968, 1877
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	180
PsyI	GACNNNGTC	2 cut(s)	67, 121
RsaI	GTAC	4 cut(s)	146, 221, 939, 1439
RsaNI	GTAC	4 cut(s)	145, 220, 938, 1438
RseI	CAYNNNNRTG	4 cut(s)	291, 660, 1603, 1864
SacI	GAGCTC	2 cut(s)	736, 954
SacII	CCGCGG	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	1184, 1557, 1842
SatI	GCNGC	9 cut(s)	23, 96, 99, 102, 105, 786, 849, 870, 1530
Sau3AI	GATC	8 cut(s)	6, 180, 1804, 1808, 1813, 1837, 1846, 1850
Sau96I	GGNCC	6 cut(s)	16, 627, 968, 1705, 1877, 1904
SchI	GAGTC	1 cut(s)	1151
ScrFI	CCNGG	7 cut(s)	14, 38, 194, 195, 260, 738, 1238
SduI	GDGCHC	5 cut(s)	718, 736, 796, 954, 1861
SfaNI	GCATC	6 cut(s)	252, 670, 772, 852, 907, 1691
SfcI	CTRYAG	3 cut(s)	184, 272, 558
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
SinI	GGWCC	4 cut(s)	968, 1705, 1877, 1904
SmaI	CCCGGG	1 cut(s)	195
SmiMI	CAYNNNNRTG	4 cut(s)	291, 660, 1603, 1864
SmlI	CTYRAG	1 cut(s)	878
SmoI	CTYRAG	1 cut(s)	878
SphI	GCATGC	2 cut(s)	323, 964
Sse9I	AATT	6 cut(s)	248, 422, 1056, 1198, 1500, 1722
SspMI	CTAG	6 cut(s)	603, 668, 1400, 1443, 1574, 1619
SstI	GAGCTC	2 cut(s)	736, 954
StyD4I	CCNGG	7 cut(s)	12, 36, 192, 193, 258, 736, 1236
StyI	CCWWGG	4 cut(s)	436, 1027, 1155, 1414
TaaI	ACNGT	4 cut(s)	562, 942, 1003, 1126
TaiI	ACGT	3 cut(s)	68, 174, 664
TaqI	TCGA	4 cut(s)	51, 1765, 1807, 1849
TasI	AATT	6 cut(s)	248, 422, 1056, 1198, 1500, 1722
TauI	GCSGC	5 cut(s)	25, 98, 101, 104, 107
TfiI	GAWTC	1 cut(s)	1432
Tru1I	TTAA	3 cut(s)	1184, 1557, 1842
Tru9I	TTAA	3 cut(s)	1184, 1557, 1842
TscAI	CASTG	4 cut(s)	281, 1006, 1105, 1707
TseFI	GTSAC	1 cut(s)	1165
TseI	GCWGC	4 cut(s)	785, 848, 869, 1529
Tsp45I	GTSAC	1 cut(s)	1165
TspDTI	ATGAA	3 cut(s)	416, 711, 968
TspMI	CCCGGG	1 cut(s)	193
TspRI	CASTG	4 cut(s)	281, 1006, 1105, 1707
Tth111I	GACNNNGTC	2 cut(s)	67, 121
VneI	GTGCAC	1 cut(s)	1857
VpaK11BI	GGWCC	4 cut(s)	968, 1705, 1877, 1904
XapI	RAATTY	2 cut(s)	248, 1198
XceI	RCATGY	5 cut(s)	323, 964, 1387, 1735, 1869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1715
XmaI	CCCGGG	1 cut(s)	193
XmiI	GTMKAC	1 cut(s)	1728
XspI	CTAG	6 cut(s)	603, 668, 1400, 1443, 1574, 1619
ZraI	GACGTC	1 cut(s)	66
Zsp2I	ATGCAT	3 cut(s)	325, 997, 1183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.