Rorug05G0565000

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
75686447 .. 75693493
7047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0565000.1

Sequence Viewer

Length: 1599 bp
ATGGCACTTCAAGGCACTCTCATCTCTGCAATCATACTTGTTTTTAGCTGTGCAGTGGCAACTAGTATAGCTACCGCCCCAAGCCATTACAACGTTGCTTCCATCAACCGGAGCACCTTTCCGGCAGGTTTCATATTTGGGACAGCTTCTTCAGCTTACCAGTTCGAAGGTGCTGCAAAAGAAGATGGAAGAGGACCAAGCATATGGGACACATACACTCACAAAATTCCAGATAAGATAAAAGACGGCAGCAATGGAGATGTCGCTATTGATGCATATCACCGCTACAAGGAGGATGTTGGCATCATGAAAAATATGGGGTTTGATGCTTACAGATTCTCCATCTCGTGGTCTAGATTGTTACCAAATGGAACGCTAAGAGGGGGTGTGAATAAGGAAGGAATCAAATATTACAACAACCTCATAAACGAGCTTCTAGCCAATGGTCTAAAGCCCTTTGTCACACTCTTCCACTGGGATCTTCCCCAAGCTTTAGAAGATGAATACGGTGGCTTCTTAAGCCCTCAAATTGTAAACCATTTCCAAGACTACGCAGAGCTATGCTTCAAGGAATTTGGTGATAGAGTTAAGGACTGGATCACATTAAACGAGCCCTGGAGCTACGCCAATGGTGGTTATGTAATTGGGACGTTTGCACCATGCCGATGTTCTGAATGGCAAAACCTAAATTGCACCTGTGGAAATTCAGGAACAGAGCCATATTTGGTCTCACACTACCAGCTTCTAGCTCACGCAGCAGCCGTAAAGTTATACAAGGAGAAGTATCAGGCTGATCAGAAGGGTGTGATAGGGATAACAATACTGTCACACTGGTTTGTGCCCTTTTCTGATGCCAAGCACCATGAACAAGCTGCGTGTTATCCGTCACACTGGTTTGTGCCCTTTTCTGATGCCAAGCACCATGAAGAAGCTGCTCTACGAGCATTGGATTTTATGTTTGGATGGTATATGGATCCCTTAACAAACGGTGAATATCCGCACAGCATGAGATCTCTTGTCGGAGATCGATTACCCAAGTTCACTAAAGAGCAATCCGAGATGTTAAAAGGTTCATTTGATTTTCTGGGATTGAATTACTACACCGCTAACTATGCTACTTATGCACCTCATCTCAAGAATGCTGCAAACCCTAGCTACTTTACAGATGCTGTCGCTACTGTTTCCACCGAGCGTAATGGTATTCCTATTGGTCAAAAGGCTGCTTCAGATTGGCTCTATGTTTATCCAGAAGGAATTCGAGAACTATTGCTTTACACGAAGGAAAAGTACAATAATCCACTTATTTACATCACTGAAAATGGAAGGGATGAGCACAATGATGCCAAATTATCACTTGAGGAAGCCCTAGCCGATACTCACCGAATCGACTTTTACTATCGACATCTTTATTATCTTCATGAAGCGATCAAGGATGGCGTTAACGTGAAGGGATATTTTGCTTGGTCTTTGTTTGACAACTTCGAATGGAATATGGGTTACAGTGTTAGGTTTGGCATCAACTATGTGGATTACAATGATGGGCTCAAAAGATACCCTAAACTCTCAGCACACTGGTTCAAGAATTTTCTTGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

532

Amino Acids

60.64

Weight (kDa)

5.92

Isoelectric Point (pI)

27.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 37 - 291 9e-97 Glycosyl hydrolase family 1
Glyco_hydro_1 PF00232 295 - 531 3.8e-60 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 348
AciI CCGC 4 cut(s) 75, 283, 998, 1104
AclI AACGTT 1 cut(s) 93
AclWI GGATC 4 cut(s) 486, 605, 968, 981
AcsI RAATTY 5 cut(s) 225, 572, 703, 1254, 1582
AcuI CTGAAG 2 cut(s) 135, 1209
AfaI GTAC 1 cut(s) 1289
AfiI CCNNNNNNNGG 3 cut(s) 108, 289, 348
AflII CTTAAG 1 cut(s) 517
AgsI TTSAA 5 cut(s) 11, 568, 1093, 1579, 1592
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 614
Alw21I GWGCWC 2 cut(s) 116, 1335
Alw26I GTCTC 1 cut(s) 733
AlwI GGATC 4 cut(s) 486, 605, 968, 981
AlwNI CAGNNNCTG 1 cut(s) 1169
ApeKI GCWGC 8 cut(s) 173, 249, 755, 758, 872, 932, 1142, 1220
ApoI RAATTY 5 cut(s) 225, 572, 703, 1254, 1582
Asp700I GAANNNNTTC 1 cut(s) 1254
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 4 cut(s) 272, 590, 1001, 1370
AsuII TTCGAA 2 cut(s) 165, 1482
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 2 cut(s) 843, 903
BamHI GGATCC 1 cut(s) 973
BanII GRGCYC 2 cut(s) 615, 1545
BarI GAAGNNNNNNTAC 4 cut(s) 921, 953, 1271, 1303
BauI CACGAG 1 cut(s) 346
Bbv12I GWGCWC 2 cut(s) 116, 1335
BbvI GCAGC 8 cut(s) 160, 261, 767, 770, 859, 919, 1129, 1207
BccI CCATC 6 cut(s) 110, 179, 350, 957, 1427, 1532
BceAI ACGGC 2 cut(s) 262, 746
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BciT130I CCWGG 1 cut(s) 616
BclI TGATCA 1 cut(s) 793
BcoDI GTCTC 1 cut(s) 733
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 6 cut(s) 63, 354, 437, 746, 1152, 1367
BfrI CTTAAG 1 cut(s) 517
BfuAI ACCTGC 1 cut(s) 116
BglII AGATCT 1 cut(s) 1010
BisI GCNGC 8 cut(s) 174, 250, 756, 759, 873, 933, 1143, 1221
BlsI GCNGC 8 cut(s) 175, 251, 757, 760, 874, 934, 1144, 1222
Bme1390I CCNGG 1 cut(s) 616
Bme18I GGWCC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 975
BmrFI CCNGG 1 cut(s) 616
BmrI ACTGGG 1 cut(s) 484
BmsI GCATC 8 cut(s) 262, 312, 316, 841, 901, 1156, 1330, 1524
BmuI ACTGGG 1 cut(s) 484
BpmI CTGGAG 1 cut(s) 637
Bpu14I TTCGAA 2 cut(s) 165, 1482
BpuEI CTTGAG 2 cut(s) 1118, 1376
Bsa29I ATCGAT 1 cut(s) 1027
BsaBI GATNNNNATC 1 cut(s) 276
BsaI GGTCTC 1 cut(s) 733
BsaJI CCNNGG 1 cut(s) 614
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 289, 348
Bse1I ACTGG 6 cut(s) 160, 479, 599, 836, 896, 1577
Bse3DI GCAATG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 276
BseBI CCWGG 1 cut(s) 616
BseCI ATCGAT 1 cut(s) 1027
BseDI CCNNGG 1 cut(s) 614
BseGI GGATG 4 cut(s) 301, 968, 1333, 1438
BseJI GATNNNNATC 1 cut(s) 276
BseLI CCNNNNNNNGG 3 cut(s) 108, 289, 348
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 1578
BseNI ACTGG 6 cut(s) 160, 479, 599, 836, 896, 1577
BseSI GKGCMC 2 cut(s) 843, 903
BseXI GCAGC 8 cut(s) 160, 261, 767, 770, 859, 919, 1129, 1207
BsgI GTGCAG 1 cut(s) 72
BshVI ATCGAT 1 cut(s) 1027
BsiHKAI GWGCWC 2 cut(s) 116, 1335
BsiSI CCGG 2 cut(s) 109, 122
BslFI GGGAC 3 cut(s) 154, 221, 661
BslI CCNNNNNNNGG 3 cut(s) 108, 289, 348
BsmAI GTCTC 1 cut(s) 733
BsmFI GGGAC 3 cut(s) 154, 221, 661
BsmI GAATGC 1 cut(s) 1144
Bso31I GGTCTC 1 cut(s) 733
Bsp119I TTCGAA 2 cut(s) 165, 1482
Bsp1286I GDGCHC 6 cut(s) 116, 615, 843, 903, 1335, 1545
Bsp143I GATC 7 cut(s) 478, 597, 793, 973, 1010, 1024, 1425
BspACI CCGC 4 cut(s) 75, 283, 998, 1104
BspCNI CTCAG 1 cut(s) 1577
BspDI ATCGAT 1 cut(s) 1027
BspHI TCATGA 2 cut(s) 306, 1417
BspLI GGNNCC 1 cut(s) 975
BspMI ACCTGC 1 cut(s) 116
BspPI GGATC 4 cut(s) 486, 605, 968, 981
BspT104I TTCGAA 2 cut(s) 165, 1482
BspTI CTTAAG 1 cut(s) 517
BspTNI GGTCTC 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 259
BsrI ACTGG 6 cut(s) 160, 479, 599, 836, 896, 1577
BssECI CCNNGG 1 cut(s) 614
BssMI GATC 7 cut(s) 478, 597, 793, 973, 1010, 1024, 1425
BssSI CACGAG 1 cut(s) 346
Bst2BI CACGAG 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 616
Bst4CI ACNGT 5 cut(s) 509, 825, 989, 1180, 1502
Bst6I CTCTTC 2 cut(s) 184, 473
BstAFI CTTAAG 1 cut(s) 517
BstBI TTCGAA 2 cut(s) 165, 1482
BstDEI CTNAG 2 cut(s) 377, 1564
BstF5I GGATG 4 cut(s) 301, 968, 1333, 1438
BstKTI GATC 7 cut(s) 481, 600, 796, 976, 1013, 1027, 1428
BstMAI GTCTC 1 cut(s) 733
BstMBI GATC 7 cut(s) 478, 597, 793, 973, 1010, 1024, 1425
BstMWI GCNNNNNNNGC 7 cut(s) 152, 272, 519, 755, 941, 1112, 1121
BstNI CCWGG 1 cut(s) 616
BstSCI CCNGG 1 cut(s) 614
BstSLI GKGCMC 2 cut(s) 843, 903
BstV1I GCAGC 8 cut(s) 160, 261, 767, 770, 859, 919, 1129, 1207
BstX2I RGATCY 3 cut(s) 478, 973, 1010
BstXI CCANNNNNNTGG 1 cut(s) 204
BstYI RGATCY 3 cut(s) 478, 973, 1010
Bsu15I ATCGAT 1 cut(s) 1027
BsuTUI ATCGAT 1 cut(s) 1027
BtsCI GGATG 4 cut(s) 301, 968, 1333, 1438
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 7 cut(s) 60, 472, 829, 889, 1311, 1507, 1570
BveI ACCTGC 1 cut(s) 116
CaiI CAGNNNCTG 1 cut(s) 1169
CciI TCATGA 2 cut(s) 306, 1417
Cfr13I GGNCC 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 1027
Csp6I GTAC 1 cut(s) 1288
CviAII CATG 6 cut(s) 307, 660, 863, 923, 1006, 1418
CviQI GTAC 1 cut(s) 1288
DdeI CTNAG 2 cut(s) 377, 1564
DpnI GATC 7 cut(s) 480, 599, 795, 975, 1012, 1026, 1427
DpnII GATC 7 cut(s) 478, 597, 793, 973, 1010, 1024, 1425
Eam1104I CTCTTC 2 cut(s) 184, 473
EarI CTCTTC 2 cut(s) 184, 473
Eco24I GRGCYC 2 cut(s) 615, 1545
Eco31I GGTCTC 1 cut(s) 733
Eco47I GGWCC 1 cut(s) 194
Eco57I CTGAAG 2 cut(s) 135, 1209
EcoRI GAATTC 1 cut(s) 1254
EcoRII CCWGG 1 cut(s) 614
EcoT22I ATGCAT 1 cut(s) 277
EcoT38I GRGCYC 2 cut(s) 615, 1545
FaeI CATG 6 cut(s) 310, 663, 866, 926, 1009, 1421
FaqI GGGAC 3 cut(s) 154, 221, 661
FatI CATG 6 cut(s) 306, 659, 862, 922, 1005, 1417
FauNDI CATATG 1 cut(s) 203
FbaI TGATCA 1 cut(s) 793
Fnu4HI GCNGC 8 cut(s) 174, 250, 756, 759, 873, 933, 1143, 1221
FokI GGATG 4 cut(s) 308, 975, 1340, 1445
FriOI GRGCYC 2 cut(s) 615, 1545
Fsp4HI GCNGC 8 cut(s) 174, 250, 756, 759, 873, 933, 1143, 1221
FspBI CTAG 6 cut(s) 63, 354, 437, 746, 1152, 1367
GluI GCNGC 8 cut(s) 174, 250, 756, 759, 873, 933, 1143, 1221
GsuI CTGGAG 1 cut(s) 637
HapII CCGG 2 cut(s) 109, 122
Hin1II CATG 6 cut(s) 310, 663, 866, 926, 1009, 1421
HincII GTYRAC 1 cut(s) 1441
HindII GTYRAC 1 cut(s) 1441
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 3 cut(s) 336, 402, 1383
HpaI GTTAAC 1 cut(s) 1441
HpaII CCGG 2 cut(s) 109, 122
HphI GGTGA 4 cut(s) 272, 590, 1001, 1370
Hpy166II GTNNAC 3 cut(s) 535, 1041, 1441
Hpy188I TCNGA 7 cut(s) 673, 798, 850, 910, 1022, 1057, 1228
Hpy8I GTNNAC 3 cut(s) 535, 1041, 1441
HpyAV CCTTC 7 cut(s) 161, 392, 793, 1244, 1273, 1317, 1441
HpyCH4III ACNGT 5 cut(s) 509, 825, 989, 1180, 1502
HpyCH4IV ACGT 3 cut(s) 93, 650, 1443
HpyCH4V TGCA 8 cut(s) 29, 53, 176, 275, 656, 693, 1124, 1145
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 272, 519, 755, 941, 1112, 1121
HpyF3I CTNAG 2 cut(s) 377, 1564
HpySE526I ACGT 3 cut(s) 93, 650, 1443
Hsp92II CATG 6 cut(s) 310, 663, 866, 926, 1009, 1421
Ksp22I TGATCA 1 cut(s) 793
KspAI GTTAAC 1 cut(s) 1441
Kzo9I GATC 7 cut(s) 478, 597, 793, 973, 1010, 1024, 1425
LmnI GCTCC 2 cut(s) 111, 618
Lsp1109I GCAGC 8 cut(s) 160, 261, 767, 770, 859, 919, 1129, 1207
LweI GCATC 8 cut(s) 262, 312, 316, 841, 901, 1156, 1330, 1524
MaeI CTAG 6 cut(s) 63, 354, 437, 746, 1152, 1367
MaeII ACGT 3 cut(s) 93, 650, 1443
MaeIII GTNAC 5 cut(s) 360, 460, 825, 885, 1496
MalI GATC 7 cut(s) 480, 599, 795, 975, 1012, 1026, 1427
MboI GATC 7 cut(s) 478, 597, 793, 973, 1010, 1024, 1425
MboII GAAGA 8 cut(s) 141, 194, 201, 460, 473, 509, 938, 1406
MflI RGATCY 3 cut(s) 478, 973, 1010
MhlI GDGCHC 6 cut(s) 116, 615, 843, 903, 1335, 1545
MmeI TCCRAC 1 cut(s) 1000
MnlI CCTC 7 cut(s) 185, 286, 374, 431, 534, 1137, 1351
Mph1103I ATGCAT 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 1254
MseI TTAA 6 cut(s) 518, 588, 605, 980, 1064, 1440
MslI CAYNNNNRTG 2 cut(s) 664, 1338
MspCI CTTAAG 1 cut(s) 517
MspI CCGG 2 cut(s) 109, 122
MspR9I CCNGG 1 cut(s) 616
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 1 cut(s) 616
MwoI GCNNNNNNNGC 7 cut(s) 152, 272, 519, 755, 941, 1112, 1121
NdeI CATATG 1 cut(s) 203
NdeII GATC 7 cut(s) 478, 597, 793, 973, 1010, 1024, 1425
NlaIII CATG 6 cut(s) 310, 663, 866, 926, 1009, 1421
NlaIV GGNNCC 1 cut(s) 975
NmuCI GTSAC 3 cut(s) 460, 825, 885
NsiI ATGCAT 1 cut(s) 277
NspV TTCGAA 2 cut(s) 165, 1482
PagI TCATGA 2 cut(s) 306, 1417
PcsI WCGNNNNNNNCGW 1 cut(s) 759
PctI GAATGC 1 cut(s) 1144
PdmI GAANNNNTTC 1 cut(s) 1254
PfeI GAWTC 3 cut(s) 336, 402, 1383
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 8 cut(s) 175, 251, 757, 760, 874, 934, 1144, 1222
Psp1406I AACGTT 1 cut(s) 93
Psp6I CCWGG 1 cut(s) 614
PspGI CCWGG 1 cut(s) 614
PspN4I GGNNCC 1 cut(s) 975
PspPI GGNCC 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 1169
PsuI RGATCY 3 cut(s) 478, 973, 1010
RsaI GTAC 1 cut(s) 1289
RsaNI GTAC 1 cut(s) 1288
RseI CAYNNNNRTG 2 cut(s) 664, 1338
SaqAI TTAA 6 cut(s) 518, 588, 605, 980, 1064, 1440
SatI GCNGC 8 cut(s) 174, 250, 756, 759, 873, 933, 1143, 1221
Sau3AI GATC 7 cut(s) 478, 597, 793, 973, 1010, 1024, 1425
Sau96I GGNCC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 6 cut(s) 116, 615, 843, 903, 1335, 1545
SfaNI GCATC 8 cut(s) 262, 312, 316, 841, 901, 1156, 1330, 1524
SfuI TTCGAA 2 cut(s) 165, 1482
SinI GGWCC 1 cut(s) 194
SmiMI CAYNNNNRTG 2 cut(s) 664, 1338
SmlI CTYRAG 3 cut(s) 517, 1133, 1355
SmoI CTYRAG 3 cut(s) 517, 1133, 1355
SpeI ACTAGT 1 cut(s) 62
SsiI CCGC 4 cut(s) 75, 283, 998, 1104
SspI AATATT 1 cut(s) 410
SspMI CTAG 6 cut(s) 63, 354, 437, 746, 1152, 1367
StyD4I CCNGG 1 cut(s) 614
TaaI ACNGT 5 cut(s) 509, 825, 989, 1180, 1502
TaiI ACGT 3 cut(s) 96, 653, 1446
TaqI TCGA 6 cut(s) 165, 1027, 1258, 1386, 1399, 1482
TatI WGTACW 1 cut(s) 1287
TfiI GAWTC 3 cut(s) 336, 402, 1383
Tru1I TTAA 6 cut(s) 518, 588, 605, 980, 1064, 1440
Tru9I TTAA 6 cut(s) 518, 588, 605, 980, 1064, 1440
TscAI CASTG 7 cut(s) 60, 479, 836, 896, 1318, 1507, 1577
TseFI GTSAC 3 cut(s) 460, 825, 885
TseI GCWGC 8 cut(s) 173, 249, 755, 758, 872, 932, 1142, 1220
Tsp45I GTSAC 3 cut(s) 460, 825, 885
TspDTI ATGAA 8 cut(s) 121, 323, 516, 879, 939, 1062, 1406, 1434
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 7 cut(s) 60, 479, 836, 896, 1318, 1507, 1577
Van91I CCANNNNNTGG 1 cut(s) 348
Vha464I CTTAAG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 5 cut(s) 225, 572, 703, 1254, 1582
XbaI TCTAGA 1 cut(s) 353
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 6 cut(s) 63, 354, 437, 746, 1152, 1367
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.