Rw6G007480

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009109
Physical Location & Seq
Reverse (-)
12267235 .. 12272760
5526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007480.1

Sequence Viewer

Length: 3297 bp
ATGGAGATCGCCCCGGCGCCGCCACAGCTTTCAGACCGGGACGTCCCAAACGACGCCGCGTCGCTAAGCACCGTCAAAACGGCGCCGTCGGAGAGCAACAACGAGGCGAACGTGTCGACGTCGTCGTCGTCGGTGGCGGGGAAGTACGACGATGAGGAAGAGGAGGAGGACGTGTGCCGGATCTGTAGGAACCCTGGCGACGCCGATAACCCGCTCAGGTATCCATGCGCGTGTAGCGGAAGCATCAAGTTCGTGCACCAGGATTGTCTCCTTCAGTGGCTCAATCACAGTAATGCTCGCCAATGCGAGGTTTGCAAGCATCCATTTTCCTTCTCTCCCGTTTATGCTGAGAATGCACCTGCTAGGCTTCCTTTTCAAGAGTTTGTGGTTGGGATGGCAATGAAAACTTGTCATGTTCTGCAATTTTTCCTGCGCCTTAGTTTTGTGCTTTCCGTTTGGCTCCTCATTATACCTTTCATCACATTTTGGATATGGCGGCTGGCTTTTGTGAGGAGTTTTGGTGAAGCTCAGAGATTATTCCTAAGTCATCTATCAACTACAGTCATTCTTACTGATTGTCTGCATGGGTTCCTACTTTCTGCTAGCATTGTGTTCATTTTTCTCGGAGCCACTTCTCTGAGGGATTACTTCAGGCATTTACGTGAGCTTGGAGGTCAAGATGTTGACAGAGAAGATGAAGCAGAAAGAAATGGCGCTCGTCCTGTAAGAAGAGTTCCTGGACAAGCTAATAGGAACTTTGTTGGGGATGCTAACGGGGAAGATGCTGCTGGAGCACAAGGGATTGCTGGAGCAGGTCAAATGATTAGAAGGAATGCAGAAAATGTGGCTGCTCGCTGGGAGATGCAGGCAGCTCGTCTTGAGGCTCATGTTGAACAGATGTTTGATGGTCTAGACGATGCCGATGGTGCAGAGGATGTACCATTTGACGAGCTTGTGGGCATGCAGGGACCTGTATTTCATTTAGTGGAAAATGCATTTACTGTACTGGCAAGCAATATGATATTCCTTGGTGTAGTAATATTTGTGCCCTTCTCGTTAGGTCGGATTATACTCTATCATTTATCTTGGCTTTTCTCCACCGCTAGTGGTCCAGTTTTGTCAACAGTCATGCCACTCACTGAATCAGCCCTTTCCTTGGCTAATATGACTTTGAAGAATGCATTAACAGCTGTAACAAATTTATCAACCGATAGCGAGAAAAGTGGTATGGTTGGCCAGGTTGCAGAGATCTTGAAAGTTAACATGAGTGGACTGAATGAGGTTTCGAACAATAATGCAAGTTCAACACTTTCAGCAGACTTCCTGAAAGGGGCAACAATTGGAACTTCAAGGCTCTCTGATGTGACAACTCTTGCTATTGGATACATGTTTATATTCTCCCTAGTTTTCTTCTACCTTGGTATTGTGGCTTTCATTCGGTATACTAGGGGTGAGCCATTGACTATGGGGAGGTTTTATGGTATTGCTTCAATGGCAGAAACAATTCCATCTCTCTTCAGGCAGTTCCTGGCAGCAATGAGGCATTTGATGACAATGATTAAGGTCGCTTTCCTTCTGGTCATTGAACTTGGAGTGTTCCCATTAATGTGTGGATGGTGGTTGGATGTTTGTACTATAAGGATGTTTGGGAAGTCCATGTCTCACAGGGTGCAGTTCTTCTCAGCATCTCCCTTAGCTAGCTCCCTGGTCCATTGGGTTGTAGGAATCGTATACATGCTACAAATAAGCATATTCGTCAGTCTTCTTCGAGGGGTTCTGCGTAATGGAGTTCTTTATTTCCTTAGAGATCCAGCTGATCCAAACTACAATCCCTTCCGTGATCTCATTGATGATCCTGTGCACAAGCATGCTCGCAGGGTCCTGTTATCCGTTGCGGTGTATGGGATTAAACTAGCTATGCGGATGGCACCTTCCATTTTTCCTCTTGACATTTCGGTATCTGACCCATTTACTGAAATTCCTGCGGACATGCTTCTATTTCAAATATGCATTCCATTTGCCATTGAGCATTTCAAATTACGGGCAACCATTAAATCCCTGCTTCGTTATTGGTTTACGGCAGTTGGCTGGGCACTTGGTTTAAAAGACTTCTTACTACCCAGACCTGAGGATAACGTTGGACAGGAAAATGGAAATGCAGAGCCTGGAAGACAGGATAGACTACAGGTTCAATTGGGGCTACAGGATCAGGCTTTAGTGGCACTTCCAGGTGCTGATGAACCAAATCGAGGCCTTCTTGCATCAGGGGACGCGAATGTTGCAGAGGAGTATGACACTGATGAACAATCTGATTCTGAAAGGTATAGCTTTGTGCTTCGAATTGTCCTCTTGTTGGTGGTGGCTTGGATGACTTTACTCGTCTTCAACTCGGCCTTGATAGTTGTACCAACATCACTGGGAAGAACAATTTTCAATGTCATTCCTTTCCTCCCTATAACTCATGGCATCAAGTGCAACGATTTATATGCTTTCATCATTGGAAGCTACATAATATGGACTGCTGTAGCTGGAGTTAGATATTCTATTGAACACATTAGAACAAAAAGGGTTGCAGTTCTATTGGGCCAGATCTGGAAGTGGTGTAGCATTGTCATTAAGAGTTCTGCACTGTTGTCAATATGGATTTTTGTCATTCCAGTATTGATCGGGTTGCTCTTTGAGCTTCTGGTGATTGTGCCGATGCGGGTGCCTGTTGATGAAAGCCCAGTATTCCTGCTGTATCAGGACTGGGCTTTAGGCCTTATTTTTCTCAAGATATGGACAAGATTGGTGATGTTGGATCACATGATGCCATTGGTAGATGAAAGCTGGCGCGTAAAGTTTGAAAGGGTGAGGGAAGATGGCTTCTCCAGGCTGCAAGGTCTTTGGGTGCTCCGGGAGATTGTATTCCCAATCATAATGAAGTTGTTGACTGCCCTGTGTGTGCCTTATGTACTTGCAAGAGGGTTATTTCCTGTGCTCGGTTACCCATTAGTAGTCAACTCAGCAGTGTATCGGTTTGCCTGGATAGGATGCCTGTGCTTTAGTCTGCTGTGCTTCTGTGCCAAGAGGTTCCATGTATGGTTCACCAACCTTCACAACTCTATACGTGATGACCGATATCTAATTGGTCGTAGGCTTCATAACTTTGGAGAAGATGTTGTAGAGAAGCAAAATGAGGCAGGGACATCCTCTGAATTGCAGGACTCTAGTTTTGAAGCCAGTGGTTTAATTCCTCATGACCGAGAGGCTGACGATGGTCTCCGTCAAAGGCGTGCTATCCAACATAATGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0001101 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006720 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009698 GO:0009699 GO:0009893 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010243 GO:0010345 GO:0010498 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030176 GO:0030433 GO:0031224 GO:0031227 GO:0031624 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042175 GO:0042221 GO:0042335 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0048518 GO:0048856 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0051603 GO:0051716 GO:0065007 GO:0065009 GO:0070647 GO:0070936 GO:0071704 GO:0098827 GO:0140096 GO:1900490 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901568 GO:1901570 GO:1901575 GO:1901576 GO:1901698 GO:1901700 GO:1990381 GO:2001215
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
RINGv

Protein Analysis

1098

Amino Acids

122.94

Weight (kDa)

5.88

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 59 - 105 9.8e-17 RING-variant domain
MARCHF6_C PF23113 859 - 1037 7.8e-51 E3 ubiquitin-protein ligase MARCHF6-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
AasI GACNNNNNNGTC 2 cut(s) 41, 124
AatII GACGTC 2 cut(s) 45, 122
Acc36I ACCTGC 2 cut(s) 367, 803
AccB1I GGYRCC 4 cut(s) 16, 82, 1927, 2707
AccBSI CCGCTC 1 cut(s) 214
AccI GTMKAC 3 cut(s) 116, 1442, 1731
AccII CGCG 4 cut(s) 59, 230, 2273, 2835
AclI AACGTT 1 cut(s) 2136
AclWI GGATC 6 cut(s) 188, 1802, 1811, 1847, 2214, 2808
AcoI YGGCCR 1 cut(s) 1234
AcsI RAATTY 2 cut(s) 1198, 1977
AcuI CTGAAG 3 cut(s) 257, 634, 1501
AcyI GRCGYC 6 cut(s) 17, 42, 54, 83, 119, 201
AdeI CACNNNGTG 1 cut(s) 1669
AfaI GTAC 6 cut(s) 146, 939, 1005, 1633, 2406, 2955
AfiI CCNNNNNNNGG 6 cut(s) 307, 1156, 1330, 2249, 2353, 2981
AflIII ACRYGT 3 cut(s) 111, 171, 1386
AhdI GACNNNNNGTC 1 cut(s) 58
AjiI CACGTC 1 cut(s) 172
Alw21I GWGCWC 5 cut(s) 258, 796, 1863, 2895, 2982
Alw26I GTCTC 3 cut(s) 272, 1665, 3266
Alw44I GTGCAC 2 cut(s) 254, 1859
AlwI GGATC 6 cut(s) 188, 1802, 1811, 1847, 2214, 2808
AlwNI CAGNNNCTG 3 cut(s) 1528, 2165, 2234
AoxI GGCC 5 cut(s) 1234, 2251, 2391, 2584, 2758
ApaLI GTGCAC 2 cut(s) 254, 1859
ApeKI GCWGC 5 cut(s) 785, 848, 869, 1532, 2875
ApoI RAATTY 2 cut(s) 1198, 1977
ArsI GACNNNNNNTTYG 2 cut(s) 3197, 3229
AseI ATTAAT 1 cut(s) 1604
Asp700I GAANNNNTTC 1 cut(s) 1503
AspLEI GCGC 6 cut(s) 19, 85, 230, 435, 716, 2835
AspS9I GGNCC 5 cut(s) 968, 1109, 1708, 1879, 2584
AsuC2I CCSGG 3 cut(s) 14, 38, 2897
AsuHPI GGTGA 6 cut(s) 533, 1463, 2701, 2803, 2863, 3079
AsuII TTCGAA 2 cut(s) 1286, 2338
AsuNHI GCTAGC 2 cut(s) 602, 1697
AvaII GGWCC 4 cut(s) 968, 1109, 1708, 1879
AxyI CCTNAGG 1 cut(s) 2127
BaeGI GKGCMC 4 cut(s) 258, 1050, 1863, 2095
BalI TGGCCA 1 cut(s) 1236
BanI GGYRCC 4 cut(s) 16, 82, 1927, 2707
BbsI GAAGAC 3 cut(s) 1754, 2176, 2374
Bbv12I GWGCWC 5 cut(s) 258, 796, 1863, 2895, 2982
BbvI GCAGC 5 cut(s) 772, 835, 881, 1544, 2862
BccI CCATC 8 cut(s) 388, 899, 917, 1516, 1608, 1918, 2855, 3251
BceAI ACGGC 3 cut(s) 70, 96, 2094
BcgI CGANNNNNNTGC 8 cut(s) 232, 266, 854, 888, 2468, 2502, 2689, 2723
BciVI GTATCC 2 cut(s) 231, 1376
BcnI CCSGG 3 cut(s) 14, 38, 2897
BcoDI GTCTC 3 cut(s) 272, 1665, 3266
BfaI CTAG 9 cut(s) 363, 603, 911, 1104, 1403, 1446, 1698, 1913, 3210
BfmI CTRYAG 5 cut(s) 184, 558, 2183, 2201, 2523
BfoI RGCGCY 3 cut(s) 20, 86, 717
BfuAI ACCTGC 2 cut(s) 367, 803
BfuI GTATCC 2 cut(s) 231, 1376
BglII AGATCT 2 cut(s) 1248, 2589
BisI GCNGC 8 cut(s) 20, 57, 497, 786, 849, 870, 1533, 2876
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 8 cut(s) 21, 58, 498, 787, 850, 871, 1534, 2877
Bme18I GGWCC 4 cut(s) 968, 1109, 1708, 1879
BmeRI GACNNNNNGTC 1 cut(s) 58
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 5 cut(s) 968, 1109, 1708, 1879, 2584
BmrI ACTGGG 3 cut(s) 2426, 2720, 2758
BmtI GCTAGC 2 cut(s) 606, 1701
BmuI ACTGGG 3 cut(s) 2426, 2720, 2758
BoxI GACNNNNGTC 1 cut(s) 3258
BpiI GAAGAC 3 cut(s) 1754, 2176, 2374
BpmI CTGGAG 4 cut(s) 810, 828, 2550, 2854
Bpu10I CCTNAGC 2 cut(s) 215, 1693
Bpu1102I GCTNAGC 1 cut(s) 65
Bpu14I TTCGAA 2 cut(s) 1286, 2338
BpuEI CTTGAG 2 cut(s) 899, 2756
BpuMI CCSGG 3 cut(s) 14, 38, 2897
BsaAI YACGTR 2 cut(s) 662, 3110
BsaHI GRCGYC 6 cut(s) 17, 42, 54, 83, 119, 201
BsaI GGTCTC 1 cut(s) 3266
BsaJI CCNNGG 6 cut(s) 12, 193, 1027, 1155, 1417, 1704
BsaXI ACNNNNNCTCC 6 cut(s) 158, 188, 505, 535, 3144, 3174
Bsc4I CCNNNNNNNGG 6 cut(s) 307, 1156, 1330, 2249, 2353, 2981
Bse1I ACTGG 7 cut(s) 1011, 1112, 2421, 2657, 2726, 2753, 3222
Bse21I CCTNAGG 1 cut(s) 2127
Bse3DI GCAATG 2 cut(s) 405, 1542
BseDI CCNNGG 6 cut(s) 12, 193, 1027, 1155, 1417, 1704
BseLI CCNNNNNNNGG 6 cut(s) 307, 1156, 1330, 2249, 2353, 2981
BseMI GCAATG 2 cut(s) 405, 1542
BseMII CTCAG 7 cut(s) 229, 339, 542, 629, 1695, 2118, 3018
BseNI ACTGG 7 cut(s) 1011, 1112, 2421, 2657, 2726, 2753, 3222
BseRI GAGGAG 5 cut(s) 176, 179, 452, 526, 2300
BseSI GKGCMC 4 cut(s) 258, 1050, 1863, 2095
BseXI GCAGC 5 cut(s) 772, 835, 881, 1544, 2862
BseYI CCCAGC 2 cut(s) 855, 2088
BsgI GTGCAG 3 cut(s) 948, 1691, 2610
Bsh1236I CGCG 4 cut(s) 59, 230, 2273, 2835
BshFI GGCC 5 cut(s) 1236, 2253, 2393, 2586, 2760
BshNI GGYRCC 4 cut(s) 16, 82, 1927, 2707
BsiHKAI GWGCWC 5 cut(s) 258, 796, 1863, 2895, 2982
BsiSI CCGG 4 cut(s) 14, 37, 178, 2896
BslFI GGGAC 5 cut(s) 29, 53, 981, 2282, 3199
BslI CCNNNNNNNGG 6 cut(s) 307, 1156, 1330, 2249, 2353, 2981
BsmAI GTCTC 3 cut(s) 272, 1665, 3266
BsmFI GGGAC 5 cut(s) 29, 53, 981, 2282, 3199
BsmI GAATGC 4 cut(s) 358, 838, 1183, 2010
BsnI GGCC 5 cut(s) 1236, 2253, 2393, 2586, 2760
Bso31I GGTCTC 1 cut(s) 3266
Bsp119I TTCGAA 2 cut(s) 1286, 2338
Bsp1286I GDGCHC 7 cut(s) 258, 796, 1050, 1863, 2095, 2895, 2982
Bsp1720I GCTNAGC 1 cut(s) 65
BspANI GGCC 5 cut(s) 1236, 2253, 2393, 2586, 2760
BspCNI CTCAG 7 cut(s) 228, 340, 541, 630, 1694, 2119, 3017
BspFNI CGCG 4 cut(s) 59, 230, 2273, 2835
BspHI TCATGA 1 cut(s) 3238
BspMI ACCTGC 2 cut(s) 367, 803
BspOI GCTAGC 2 cut(s) 606, 1701
BspPI GGATC 6 cut(s) 188, 1802, 1811, 1847, 2214, 2808
BspT104I TTCGAA 2 cut(s) 1286, 2338
BspT107I GGYRCC 4 cut(s) 16, 82, 1927, 2707
BspTNI GGTCTC 1 cut(s) 3266
BsrBI CCGCTC 1 cut(s) 214
BsrDI GCAATG 2 cut(s) 405, 1542
BsrI ACTGG 7 cut(s) 1011, 1112, 2421, 2657, 2726, 2753, 3222
BssECI CCNNGG 6 cut(s) 12, 193, 1027, 1155, 1417, 1704
BssNAI GTATAC 2 cut(s) 1443, 1732
BssNI GRCGYC 6 cut(s) 17, 42, 54, 83, 119, 201
BssT1I CCWWGG 3 cut(s) 1027, 1155, 1417
Bst1107I GTATAC 2 cut(s) 1443, 1732
Bst4CI ACNGT 6 cut(s) 73, 290, 562, 1003, 1126, 2631
Bst6I CTCTTC 3 cut(s) 153, 724, 1520
BstACI GRCGYC 6 cut(s) 17, 42, 54, 83, 119, 201
BstAPI GCANNNNNTGC 1 cut(s) 2472
BstBAI YACGTR 2 cut(s) 662, 3110
BstBI TTCGAA 2 cut(s) 1286, 2338
BstEII GGTNACC 1 cut(s) 2984
BstFNI CGCG 4 cut(s) 59, 230, 2273, 2835
BstH2I RGCGCY 3 cut(s) 20, 86, 717
BstHHI GCGC 6 cut(s) 19, 85, 230, 435, 716, 2835
BstMAI GTCTC 3 cut(s) 272, 1665, 3266
BstNSI RCATGY 5 cut(s) 964, 1390, 1738, 1871, 1993
BstPAI GACNNNNGTC 1 cut(s) 3258
BstPI GGTNACC 1 cut(s) 2984
BstSFI CTRYAG 5 cut(s) 184, 558, 2183, 2201, 2523
BstSLI GKGCMC 4 cut(s) 258, 1050, 1863, 2095
BstUI CGCG 4 cut(s) 59, 230, 2273, 2835
BstV1I GCAGC 5 cut(s) 772, 835, 881, 1544, 2862
BstV2I GAAGAC 3 cut(s) 1754, 2176, 2374
BstX2I RGATCY 4 cut(s) 180, 1248, 1807, 2589
BstYI RGATCY 4 cut(s) 180, 1248, 1807, 2589
BstZ17I GTATAC 2 cut(s) 1443, 1732
Bsu36I CCTNAGG 1 cut(s) 2127
BsuI GTATCC 2 cut(s) 231, 1376
BsuRI GGCC 5 cut(s) 1236, 2253, 2393, 2586, 2760
BtrI CACGTC 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 3015
BtsIMutI CAGTG 7 cut(s) 281, 1137, 2295, 2414, 2627, 3015, 3229
BveI ACCTGC 2 cut(s) 367, 803
CaiI CAGNNNCTG 3 cut(s) 1528, 2165, 2234
CciI TCATGA 1 cut(s) 3238
CfoI GCGC 6 cut(s) 19, 85, 230, 435, 716, 2835
Cfr13I GGNCC 5 cut(s) 968, 1109, 1708, 1879, 2584
CseI GACGC 4 cut(s) 48, 62, 209, 2279
Csp6I GTAC 6 cut(s) 145, 938, 1004, 1632, 2405, 2954
CviQI GTAC 6 cut(s) 145, 938, 1004, 1632, 2405, 2954
DinI GGCGCC 2 cut(s) 18, 84
DraI TTTAAA 1 cut(s) 2103
DraIII CACNNNGTG 1 cut(s) 1669
DrdI GACNNNNNNGTC 2 cut(s) 41, 124
DriI GACNNNNNGTC 1 cut(s) 58
DseDI GACNNNNNNGTC 2 cut(s) 41, 124
EaeI YGGCCR 1 cut(s) 1234
Eam1104I CTCTTC 3 cut(s) 153, 724, 1520
Eam1105I GACNNNNNGTC 1 cut(s) 58
EarI CTCTTC 3 cut(s) 153, 724, 1520
Eco130I CCWWGG 3 cut(s) 1027, 1155, 1417
Eco147I AGGCCT 2 cut(s) 2253, 2760
Eco31I GGTCTC 1 cut(s) 3266
Eco32I GATATC 1 cut(s) 3122
Eco47I GGWCC 4 cut(s) 968, 1109, 1708, 1879
Eco57I CTGAAG 3 cut(s) 257, 634, 1501
Eco81I CCTNAGG 1 cut(s) 2127
Eco91I GGTNACC 1 cut(s) 2984
EcoO109I RGGNCCY 2 cut(s) 968, 1879
EcoO65I GGTNACC 1 cut(s) 2984
EcoRV GATATC 1 cut(s) 3122
EcoT14I CCWWGG 3 cut(s) 1027, 1155, 1417
EcoT22I ATGCAT 3 cut(s) 997, 1183, 2012
EgeI GGCGCC 2 cut(s) 18, 84
EheI GGCGCC 2 cut(s) 18, 84
ErhI CCWWGG 3 cut(s) 1027, 1155, 1417
FaqI GGGAC 5 cut(s) 29, 53, 981, 2282, 3199
FauI CCCGC 3 cut(s) 130, 219, 2697
FblI GTMKAC 3 cut(s) 116, 1442, 1731
Fnu4HI GCNGC 8 cut(s) 20, 57, 497, 786, 849, 870, 1533, 2876
Fsp4HI GCNGC 8 cut(s) 20, 57, 497, 786, 849, 870, 1533, 2876
FspBI CTAG 9 cut(s) 363, 603, 911, 1104, 1403, 1446, 1698, 1913, 3210
GlaI GCGC 6 cut(s) 18, 84, 229, 434, 715, 2834
GluI GCNGC 8 cut(s) 20, 57, 497, 786, 849, 870, 1533, 2876
GsaI CCCAGC 2 cut(s) 859, 2092
GsuI CTGGAG 4 cut(s) 810, 828, 2550, 2854
HaeII RGCGCY 3 cut(s) 20, 86, 717
HaeIII GGCC 5 cut(s) 1236, 2253, 2393, 2586, 2760
HapII CCGG 4 cut(s) 14, 37, 178, 2896
HgaI GACGC 4 cut(s) 48, 62, 209, 2279
HhaI GCGC 6 cut(s) 19, 85, 230, 435, 716, 2835
Hin1I GRCGYC 6 cut(s) 17, 42, 54, 83, 119, 201
Hin6I GCGC 6 cut(s) 17, 83, 228, 433, 714, 2833
HinP1I GCGC 6 cut(s) 17, 83, 228, 433, 714, 2833
HincII GTYRAC 6 cut(s) 117, 685, 1122, 1261, 2931, 3001
HindII GTYRAC 6 cut(s) 117, 685, 1122, 1261, 2931, 3001
HinfI GANTC 4 cut(s) 1142, 1725, 2312, 3206
HpaI GTTAAC 1 cut(s) 1261
HpaII CCGG 4 cut(s) 14, 37, 178, 2896
HphI GGTGA 6 cut(s) 533, 1463, 2701, 2803, 2863, 3079
HpyAV CCTTC 9 cut(s) 281, 340, 822, 1060, 1583, 1843, 1941, 2264, 3104
HpyCH4III ACNGT 6 cut(s) 73, 290, 562, 1003, 1126, 2631
HpyCH4IV ACGT 7 cut(s) 42, 111, 119, 171, 661, 2136, 3109
HpySE526I ACGT 7 cut(s) 42, 111, 119, 171, 661, 2136, 3109
Hsp92I GRCGYC 6 cut(s) 17, 42, 54, 83, 119, 201
HspAI GCGC 6 cut(s) 17, 83, 228, 433, 714, 2833
KasI GGCGCC 2 cut(s) 16, 82
KspAI GTTAAC 1 cut(s) 1261
LmnI GCTCC 6 cut(s) 465, 626, 791, 809, 1706, 2898
Lsp1109I GCAGC 5 cut(s) 772, 835, 881, 1544, 2862
MaeI CTAG 9 cut(s) 363, 603, 911, 1104, 1403, 1446, 1698, 1913, 3210
MaeII ACGT 7 cut(s) 42, 111, 119, 171, 661, 2136, 3109
MaeIII GTNAC 3 cut(s) 1192, 1363, 2984
MbiI CCGCTC 1 cut(s) 214
MfeI CAATTG 2 cut(s) 1338, 2192
MflI RGATCY 4 cut(s) 180, 1248, 1807, 2589
MhlI GDGCHC 7 cut(s) 258, 796, 1050, 1863, 2095, 2895, 2982
MlsI TGGCCA 1 cut(s) 1236
MluNI TGGCCA 1 cut(s) 1236
Mly113I GGCGCC 2 cut(s) 17, 83
MlyI GAGTC 1 cut(s) 3200
MmeI TCCRAC 5 cut(s) 69, 1043, 1602, 2119, 2778
Mox20I TGGCCA 1 cut(s) 1236
Mph1103I ATGCAT 3 cut(s) 997, 1183, 2012
MroXI GAANNNNTTC 1 cut(s) 1503
MscI TGGCCA 1 cut(s) 1236
MseI TTAA 9 cut(s) 1184, 1260, 1560, 1604, 1908, 2052, 2102, 2616, 3230
MslI CAYNNNNRTG 5 cut(s) 229, 291, 660, 1606, 1866
Msp20I TGGCCA 1 cut(s) 1236
MspA1I CMGCKG 2 cut(s) 1190, 1814
MspI CCGG 4 cut(s) 14, 37, 178, 2896
MunI CAATTG 2 cut(s) 1338, 2192
Mva1269I GAATGC 4 cut(s) 358, 838, 1183, 2010
MvnI CGCG 4 cut(s) 59, 230, 2273, 2835
NarI GGCGCC 2 cut(s) 17, 83
NciI CCSGG 3 cut(s) 14, 38, 2897
NheI GCTAGC 2 cut(s) 602, 1697
NmeAIII GCCGAG 1 cut(s) 2369
NmuCI GTSAC 1 cut(s) 1363
NsiI ATGCAT 3 cut(s) 997, 1183, 2012
NspI RCATGY 5 cut(s) 964, 1390, 1738, 1871, 1993
NspV TTCGAA 2 cut(s) 1286, 2338
PaeI GCATGC 2 cut(s) 964, 1871
PagI TCATGA 1 cut(s) 3238
PaqCI CACCTGC 1 cut(s) 367
PceI AGGCCT 2 cut(s) 2253, 2760
PciI ACATGT 1 cut(s) 1386
PcsI WCGNNNNNNNCGW 5 cut(s) 48, 108, 122, 125, 3115
PctI GAATGC 4 cut(s) 358, 838, 1183, 2010
PdmI GAANNNNTTC 1 cut(s) 1503
PfeI GAWTC 3 cut(s) 1142, 1725, 2312
PflFI GACNNNGTC 1 cut(s) 121
PfoI TCCNGGA 2 cut(s) 736, 2895
PkrI GCNGC 8 cut(s) 21, 58, 498, 787, 850, 871, 1534, 2877
PleI GAGTC 1 cut(s) 3200
PluTI GGCGCC 2 cut(s) 20, 86
PpsI GAGTC 1 cut(s) 3200
Ppu21I YACGTR 2 cut(s) 662, 3110
PpuMI RGGWCCY 2 cut(s) 968, 1879
PscI ACATGT 1 cut(s) 1386
PshAI GACNNNNGTC 1 cut(s) 3258
PshBI ATTAAT 1 cut(s) 1604
Psp1406I AACGTT 1 cut(s) 2136
Psp5II RGGWCCY 2 cut(s) 968, 1879
PspEI GGTNACC 1 cut(s) 2984
PspFI CCCAGC 2 cut(s) 855, 2088
PspPI GGNCC 5 cut(s) 968, 1109, 1708, 1879, 2584
PspPPI RGGWCCY 2 cut(s) 968, 1879
PsrI GAACNNNNNNTAC 2 cut(s) 717, 749
PstNI CAGNNNCTG 3 cut(s) 1528, 2165, 2234
PsuI RGATCY 4 cut(s) 180, 1248, 1807, 2589
PsyI GACNNNGTC 1 cut(s) 121
PvuII CAGCTG 2 cut(s) 1190, 1814
RsaI GTAC 6 cut(s) 146, 939, 1005, 1633, 2406, 2955
RsaNI GTAC 6 cut(s) 145, 938, 1004, 1632, 2405, 2954
RseI CAYNNNNRTG 5 cut(s) 229, 291, 660, 1606, 1866
SalI GTCGAC 1 cut(s) 115
SaqAI TTAA 9 cut(s) 1184, 1260, 1560, 1604, 1908, 2052, 2102, 2616, 3230
SatI GCNGC 8 cut(s) 20, 57, 497, 786, 849, 870, 1533, 2876
Sau96I GGNCC 5 cut(s) 968, 1109, 1708, 1879, 2584
SchI GAGTC 1 cut(s) 3200
SduI GDGCHC 7 cut(s) 258, 796, 1050, 1863, 2095, 2895, 2982
SfcI CTRYAG 5 cut(s) 184, 558, 2183, 2201, 2523
SfoI GGCGCC 2 cut(s) 18, 84
SfuI TTCGAA 2 cut(s) 1286, 2338
SinI GGWCC 4 cut(s) 968, 1109, 1708, 1879
SmiMI CAYNNNNRTG 5 cut(s) 229, 291, 660, 1606, 1866
SmlI CTYRAG 2 cut(s) 878, 2771
SmoI CTYRAG 2 cut(s) 878, 2771
SphI GCATGC 2 cut(s) 964, 1871
SseBI AGGCCT 2 cut(s) 2253, 2760
SspDI GGCGCC 2 cut(s) 16, 82
SspI AATATT 1 cut(s) 1041
SspMI CTAG 9 cut(s) 363, 603, 911, 1104, 1403, 1446, 1698, 1913, 3210
StuI AGGCCT 2 cut(s) 2253, 2760
StyI CCWWGG 3 cut(s) 1027, 1155, 1417
TaaI ACNGT 6 cut(s) 73, 290, 562, 1003, 1126, 2631
TaiI ACGT 7 cut(s) 45, 114, 122, 174, 664, 2139, 3112
TaqI TCGA 5 cut(s) 116, 1286, 1768, 2248, 2338
TaqII GACCGA 2 cut(s) 3132, 3258
TatI WGTACW 3 cut(s) 1003, 1631, 2953
TauI GCSGC 3 cut(s) 22, 59, 499
TfiI GAWTC 3 cut(s) 1142, 1725, 2312
Tru1I TTAA 9 cut(s) 1184, 1260, 1560, 1604, 1908, 2052, 2102, 2616, 3230
Tru9I TTAA 9 cut(s) 1184, 1260, 1560, 1604, 1908, 2052, 2102, 2616, 3230
TscAI CASTG 7 cut(s) 281, 1144, 2302, 2421, 2634, 3015, 3229
TseFI GTSAC 1 cut(s) 1363
TseI GCWGC 5 cut(s) 785, 848, 869, 1532, 2875
Tsp45I GTSAC 1 cut(s) 1363
TspGWI ACGGA 4 cut(s) 442, 1826, 1879, 3254
TspRI CASTG 7 cut(s) 281, 1144, 2302, 2421, 2634, 3015, 3229
Tth111I GACNNNGTC 1 cut(s) 121
VneI GTGCAC 2 cut(s) 254, 1859
VpaK11BI GGWCC 4 cut(s) 968, 1109, 1708, 1879
VspI ATTAAT 1 cut(s) 1604
XapI RAATTY 2 cut(s) 1198, 1977
XbaI TCTAGA 1 cut(s) 910
XceI RCATGY 5 cut(s) 964, 1390, 1738, 1871, 1993
XmiI GTMKAC 3 cut(s) 116, 1442, 1731
XmnI GAANNNNTTC 1 cut(s) 1503
XspI CTAG 9 cut(s) 363, 603, 911, 1104, 1403, 1446, 1698, 1913, 3210
ZraI GACGTC 2 cut(s) 43, 120
Zsp2I ATGCAT 3 cut(s) 997, 1183, 2012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.