Rorug05G0564900

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
75677196 .. 75683383
6188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0564900.1

Sequence Viewer

Length: 1548 bp
ATGGCAATCCAGGGGTCTTTGCTTTTGGCCATAGCGTTTCTAGTACTTGGCTTTGGATTTAGAAATGGTAAGGCCAGTAATACACCCCCTGCTCAATATGACACTGCTTTCCTCAACAGGACTAGTTTCCCAGCAGGTTTCATATTTGGGACAGCTTCATCATCTTACCAGTATGAAGGTGCTGCTCATTGTGGTGGCAGGGGACCAAGCATATGGGATAACTATACCCACAGATATCCTGAAAAGATCAAGGATGGCAGCAATGGAGATGTGGCTAGTGATGAATATCACCGCTATAAGGAAGATGTGGGGATTATGAAGAACATGGAGTTGGATGCATATCGGTTCTCTATCTCATGGTCCAGATTGTTACCAAATGGAAAGCTAACTGGGGGCGTGAACAAGGAAGGAGTCAAATACTACAACAATCTCATCAATGAACTCTTACGCAATGGTCTAAAGCCATTTGTAACCCTCTTCCACTGGGATCTTCCCCAGACTTTAGAAGATGAATATGGCGGTTTCTTAAGCCCTCTCATTGTCAATCATTTTAGGGACTATGCAGAGCTTTGTTACAAGGAATTTGGTGATAGGGTAAAGCACTGGATCACTTTTAATGAGCCATATAGTTATAGTGCTGGTGGTTATGCAGTGGCAATTTTGGCACCAGGACGCTGTTCTGATTGGCAGGAACTAAATTGCACCGGTGGGAATTCGGGTACTGAACCATACTTGGTGGCACACAACCAGCTCCTTGCTCATACAGCTGCAGTAACATTATACAAGCAGAAATATCAGTCATCTCAAAAGGGATTGATAGGGATTACTCTAGTGTCAAACTGGTTTGTGCCGGTTTCTGAGGCAGAGCACCATAAAAATGCTGCACTAAGAGCTCTAGATTATATGTTTGGATGGTTTATGGACCCCTTGACAAATGGTGACTATCCACACAGCATGAGATCTCTTGTTGGAAACCGATTACCCAAATTCACAAAGGAGCAATCCAAGTTGCTAATTGGATCATTTGATTTTCTGGGATTGAATTACTACACAGCTAATTATGCAGCAGATGCACCACACTATAATTCTGTCAATGCAAGCTACTTGACAGACGCTCATGCTACTCTTTCCTATGTGCTTAATGGAATTCCCATTGGACCAAAGGCTGCTTCGGATTGGCTATACGTTTATCCCAGAGGAATTCGAGATCTTTTGCTCTACACGAAGACAAAGTATAATGATCCACTCATATACGTTACTGAGAATGGTATTGATGAGTTCAATGATCCCAAATTAACACTTGAAGTATCCCTGAACGACACCCAGAGAGTTGACTACTACTATCGCCACCTCTATTACCTTCAAAGAGCAATCAAGGATGGTGTGAATGTTAAGGGATACTTTGCATGGTCATTGCTAGACAACTTTGAATGGAATTCTGGTTACACTGTCCGATTTGGTATCAACTATGTAGATTACAAAAATGGGCAGAATAGGCACCCAAAACTTTCTGCACACTGGTTCAAACGTTTCCTCAAGAAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

515

Amino Acids

58.68

Weight (kDa)

8.32

Isoelectric Point (pI)

22.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 41 - 514 2.5e-155 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AccB1I GGYRCC 2 cut(s) 664, 1497
AciI CCGC 2 cut(s) 292, 519
AclI AACGTT 1 cut(s) 1528
AclWI GGATC 5 cut(s) 495, 614, 1027, 1235, 1280
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 6 cut(s) 581, 712, 986, 1146, 1200, 1435
AfaI GTAC 2 cut(s) 45, 721
AfiI CCNNNNNNNGG 1 cut(s) 298
AflII CTTAAG 1 cut(s) 526
AgeI ACCGGT 1 cut(s) 704
AgsI TTSAA 6 cut(s) 1042, 1282, 1304, 1364, 1430, 1525
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 2 cut(s) 9, 667
AjuI GAANNNNNNNTTGG 4 cut(s) 314, 346, 1153, 1185
AluBI AGCT 8 cut(s) 155, 385, 568, 751, 767, 893, 1055, 1101
AluI AGCT 8 cut(s) 155, 385, 568, 751, 767, 893, 1055, 1101
Alw21I GWGCWC 2 cut(s) 870, 895
AlwI GGATC 5 cut(s) 495, 614, 1027, 1235, 1280
AoxI GGCC 2 cut(s) 27, 72
ApeKI GCWGC 6 cut(s) 182, 258, 767, 881, 1064, 1166
ApoI RAATTY 6 cut(s) 581, 712, 986, 1146, 1200, 1435
AsiGI ACCGGT 1 cut(s) 704
AspS9I GGNCC 4 cut(s) 203, 360, 922, 1157
AsuHPI GGTGA 3 cut(s) 281, 599, 950
AvaII GGWCC 4 cut(s) 203, 360, 922, 1157
BalI TGGCCA 1 cut(s) 29
BanI GGYRCC 2 cut(s) 664, 1497
BanII GRGCYC 1 cut(s) 895
BbsI GAAGAC 1 cut(s) 1232
Bbv12I GWGCWC 2 cut(s) 870, 895
BbvI GCAGC 6 cut(s) 169, 270, 754, 868, 1076, 1153
BccI CCATC 3 cut(s) 248, 906, 1373
BciT130I CCWGG 2 cut(s) 11, 669
BciVI GTATCC 2 cut(s) 1318, 1391
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 6 cut(s) 41, 123, 276, 830, 896, 1418
BfmI CTRYAG 1 cut(s) 768
BfrI CTTAAG 1 cut(s) 526
BfuAI ACCTGC 1 cut(s) 125
BfuI GTATCC 2 cut(s) 1318, 1391
BglII AGATCT 2 cut(s) 959, 1207
BisI GCNGC 6 cut(s) 183, 259, 768, 882, 1065, 1167
BlsI GCNGC 6 cut(s) 184, 260, 769, 883, 1066, 1168
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 2 cut(s) 11, 669
Bme18I GGWCC 4 cut(s) 203, 360, 922, 1157
BmgT120I GGNCC 4 cut(s) 203, 360, 922, 1157
BmiI GGNNCC 4 cut(s) 204, 666, 924, 1499
BmrFI CCNGG 2 cut(s) 11, 669
BmrI ACTGGG 2 cut(s) 399, 493
BmsI GCATC 2 cut(s) 325, 1060
BmuI ACTGGG 2 cut(s) 399, 493
BpiI GAAGAC 1 cut(s) 1232
BpuEI CTTGAG 1 cut(s) 1520
BsaBI GATNNNNATC 2 cut(s) 285, 339
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 704
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse118I RCCGGY 2 cut(s) 704, 850
Bse1I ACTGG 7 cut(s) 75, 169, 394, 488, 608, 845, 1523
Bse3DI GCAATG 3 cut(s) 268, 457, 1412
Bse8I GATNNNNATC 2 cut(s) 285, 339
BseBI CCWGG 2 cut(s) 11, 669
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 4 cut(s) 259, 340, 917, 1384
BseJI GATNNNNATC 2 cut(s) 285, 339
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMI GCAATG 3 cut(s) 268, 457, 1412
BseMII CTCAG 2 cut(s) 849, 1251
BseNI ACTGG 7 cut(s) 75, 169, 394, 488, 608, 845, 1523
BseXI GCAGC 6 cut(s) 169, 270, 754, 868, 1076, 1153
BseYI CCCAGC 1 cut(s) 130
BsgI GTGCAG 2 cut(s) 867, 1497
BshFI GGCC 2 cut(s) 29, 74
BshNI GGYRCC 2 cut(s) 664, 1497
BshTI ACCGGT 1 cut(s) 704
BsiHKAI GWGCWC 2 cut(s) 870, 895
BsiSI CCGG 2 cut(s) 705, 851
BslFI GGGAC 3 cut(s) 163, 216, 569
BslI CCNNNNNNNGG 1 cut(s) 298
BsmFI GGGAC 3 cut(s) 163, 216, 569
BsnI GGCC 2 cut(s) 29, 74
Bsp1286I GDGCHC 2 cut(s) 870, 895
Bsp143I GATC 8 cut(s) 246, 487, 606, 959, 1019, 1207, 1240, 1285
BspACI CCGC 2 cut(s) 292, 519
BspANI GGCC 2 cut(s) 29, 74
BspCNI CTCAG 2 cut(s) 850, 1252
BspLI GGNNCC 4 cut(s) 204, 666, 924, 1499
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 5 cut(s) 495, 614, 1027, 1235, 1280
BspT107I GGYRCC 2 cut(s) 664, 1497
BspTI CTTAAG 1 cut(s) 526
BsrDI GCAATG 3 cut(s) 268, 457, 1412
BsrFI RCCGGY 2 cut(s) 704, 850
BsrI ACTGG 7 cut(s) 75, 169, 394, 488, 608, 845, 1523
BssAI RCCGGY 2 cut(s) 704, 850
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 8 cut(s) 246, 487, 606, 959, 1019, 1207, 1240, 1285
Bst2UI CCWGG 2 cut(s) 11, 669
Bst4CI ACNGT 1 cut(s) 1450
Bst6I CTCTTC 1 cut(s) 482
BstAFI CTTAAG 1 cut(s) 526
BstAPI GCANNNNNTGC 1 cut(s) 1070
BstC8I GCNNGC 1 cut(s) 1099
BstDEI CTNAG 3 cut(s) 858, 887, 1260
BstF5I GGATG 4 cut(s) 259, 340, 917, 1384
BstKTI GATC 8 cut(s) 249, 490, 609, 962, 1022, 1210, 1243, 1288
BstMBI GATC 8 cut(s) 246, 487, 606, 959, 1019, 1207, 1240, 1285
BstMWI GCNNNNNNNGC 6 cut(s) 662, 764, 890, 1061, 1070, 1495
BstNI CCWGG 2 cut(s) 11, 669
BstSCI CCNGG 2 cut(s) 9, 667
BstSFI CTRYAG 1 cut(s) 768
BstV1I GCAGC 6 cut(s) 169, 270, 754, 868, 1076, 1153
BstV2I GAAGAC 1 cut(s) 1232
BstX2I RGATCY 3 cut(s) 487, 959, 1207
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 3 cut(s) 487, 959, 1207
BsuI GTATCC 2 cut(s) 1318, 1391
BsuRI GGCC 2 cut(s) 29, 74
BtsCI GGATG 4 cut(s) 259, 340, 917, 1384
BtsI GCAGTG 2 cut(s) 102, 657
BtsIMutI CAGTG 6 cut(s) 102, 481, 601, 657, 1446, 1516
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 1 cut(s) 1099
Cfr10I RCCGGY 2 cut(s) 704, 850
Cfr13I GGNCC 4 cut(s) 203, 360, 922, 1157
CseI GACGC 2 cut(s) 681, 1121
Csp6I GTAC 2 cut(s) 44, 720
CspAI ACCGGT 1 cut(s) 704
CviAII CATG 5 cut(s) 325, 357, 955, 1118, 1407
CviQI GTAC 2 cut(s) 44, 720
DdeI CTNAG 3 cut(s) 858, 887, 1260
DpnI GATC 8 cut(s) 248, 489, 608, 961, 1021, 1209, 1242, 1287
DpnII GATC 8 cut(s) 246, 487, 606, 959, 1019, 1207, 1240, 1285
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Ecl136II GAGCTC 1 cut(s) 893
Eco24I GRGCYC 1 cut(s) 895
Eco32I GATATC 1 cut(s) 236
Eco47I GGWCC 4 cut(s) 203, 360, 922, 1157
Eco53kI GAGCTC 1 cut(s) 893
EcoICRI GAGCTC 1 cut(s) 893
EcoRI GAATTC 4 cut(s) 712, 1146, 1200, 1435
EcoRII CCWGG 2 cut(s) 9, 667
EcoRV GATATC 1 cut(s) 236
EcoT22I ATGCAT 1 cut(s) 340
EcoT38I GRGCYC 1 cut(s) 895
FaeI CATG 5 cut(s) 328, 360, 958, 1121, 1410
FalI AAGNNNNNCTT 2 cut(s) 1385, 1417
FaqI GGGAC 3 cut(s) 163, 216, 569
FatI CATG 5 cut(s) 324, 356, 954, 1117, 1406
FauNDI CATATG 1 cut(s) 212
Fnu4HI GCNGC 6 cut(s) 183, 259, 768, 882, 1065, 1167
FokI GGATG 4 cut(s) 266, 347, 924, 1391
FriOI GRGCYC 1 cut(s) 895
Fsp4HI GCNGC 6 cut(s) 183, 259, 768, 882, 1065, 1167
FspBI CTAG 6 cut(s) 41, 123, 276, 830, 896, 1418
GluI GCNGC 6 cut(s) 183, 259, 768, 882, 1065, 1167
GsaI CCCAGC 1 cut(s) 134
HaeIII GGCC 2 cut(s) 29, 74
HapII CCGG 2 cut(s) 705, 851
HgaI GACGC 2 cut(s) 681, 1121
Hin1II CATG 5 cut(s) 328, 360, 958, 1121, 1410
HincII GTYRAC 1 cut(s) 1333
HindII GTYRAC 1 cut(s) 1333
HinfI GANTC 1 cut(s) 411
HpaII CCGG 2 cut(s) 705, 851
HphI GGTGA 3 cut(s) 281, 599, 950
Hpy166II GTNNAC 2 cut(s) 400, 1333
Hpy188I TCNGA 4 cut(s) 682, 859, 1174, 1454
Hpy188III TCNNGA 5 cut(s) 239, 363, 896, 1205, 1537
Hpy8I GTNNAC 2 cut(s) 400, 1333
HpyAV CCTTC 3 cut(s) 170, 401, 1370
HpyCH4III ACNGT 1 cut(s) 1450
HpyCH4IV ACGT 3 cut(s) 1185, 1254, 1528
HpyF10VI GCNNNNNNNGC 6 cut(s) 662, 764, 890, 1061, 1070, 1495
HpyF3I CTNAG 3 cut(s) 858, 887, 1260
HpySE526I ACGT 3 cut(s) 1185, 1254, 1528
Hsp92II CATG 5 cut(s) 328, 360, 958, 1121, 1410
Kzo9I GATC 8 cut(s) 246, 487, 606, 959, 1019, 1207, 1240, 1285
LmnI GCTCC 2 cut(s) 756, 997
Lsp1109I GCAGC 6 cut(s) 169, 270, 754, 868, 1076, 1153
LweI GCATC 2 cut(s) 325, 1060
MaeI CTAG 6 cut(s) 41, 123, 276, 830, 896, 1418
MaeII ACGT 3 cut(s) 1185, 1254, 1528
MaeIII GTNAC 7 cut(s) 369, 469, 572, 772, 938, 1255, 1442
MalI GATC 8 cut(s) 248, 489, 608, 961, 1021, 1209, 1242, 1287
MboI GATC 8 cut(s) 246, 487, 606, 959, 1019, 1207, 1240, 1285
MboII GAAGA 6 cut(s) 314, 331, 469, 482, 518, 1237
MflI RGATCY 3 cut(s) 487, 959, 1207
MhlI GDGCHC 2 cut(s) 870, 895
MlsI TGGCCA 1 cut(s) 29
MluNI TGGCCA 1 cut(s) 29
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 2 cut(s) 312, 949
MnlI CCTC 7 cut(s) 122, 485, 543, 853, 1190, 1361, 1544
Mox20I TGGCCA 1 cut(s) 29
Mph1103I ATGCAT 1 cut(s) 340
MscI TGGCCA 1 cut(s) 29
MseI TTAA 5 cut(s) 527, 615, 1140, 1295, 1392
MslI CAYNNNNRTG 2 cut(s) 192, 876
Msp20I TGGCCA 1 cut(s) 29
MspA1I CMGCKG 1 cut(s) 767
MspCI CTTAAG 1 cut(s) 526
MspI CCGG 2 cut(s) 705, 851
MspR9I CCNGG 2 cut(s) 11, 669
MvaI CCWGG 2 cut(s) 11, 669
MwoI GCNNNNNNNGC 6 cut(s) 662, 764, 890, 1061, 1070, 1495
NdeI CATATG 1 cut(s) 212
NdeII GATC 8 cut(s) 246, 487, 606, 959, 1019, 1207, 1240, 1285
NlaIII CATG 5 cut(s) 328, 360, 958, 1121, 1410
NlaIV GGNNCC 4 cut(s) 204, 666, 924, 1499
NmuCI GTSAC 1 cut(s) 938
NsiI ATGCAT 1 cut(s) 340
PinAI ACCGGT 1 cut(s) 704
PkrI GCNGC 6 cut(s) 184, 260, 769, 883, 1066, 1168
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp124BI GAGCTC 1 cut(s) 895
Psp1406I AACGTT 1 cut(s) 1528
Psp6I CCWGG 2 cut(s) 9, 667
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 2 cut(s) 9, 667
PspN4I GGNNCC 4 cut(s) 204, 666, 924, 1499
PspPI GGNCC 4 cut(s) 203, 360, 922, 1157
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 3 cut(s) 487, 959, 1207
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 2 cut(s) 45, 721
RsaNI GTAC 2 cut(s) 44, 720
RseI CAYNNNNRTG 2 cut(s) 192, 876
SacI GAGCTC 1 cut(s) 895
SaqAI TTAA 5 cut(s) 527, 615, 1140, 1295, 1392
SatI GCNGC 6 cut(s) 183, 259, 768, 882, 1065, 1167
Sau3AI GATC 8 cut(s) 246, 487, 606, 959, 1019, 1207, 1240, 1285
Sau96I GGNCC 4 cut(s) 203, 360, 922, 1157
ScaI AGTACT 1 cut(s) 45
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 11, 669
SduI GDGCHC 2 cut(s) 870, 895
SfaNI GCATC 2 cut(s) 325, 1060
SfcI CTRYAG 1 cut(s) 768
SgrAI CRCCGGYG 1 cut(s) 704
SinI GGWCC 4 cut(s) 203, 360, 922, 1157
SmiMI CAYNNNNRTG 2 cut(s) 192, 876
SmlI CTYRAG 2 cut(s) 526, 1535
SmoI CTYRAG 2 cut(s) 526, 1535
SpeI ACTAGT 1 cut(s) 122
SsiI CCGC 2 cut(s) 292, 519
SspMI CTAG 6 cut(s) 41, 123, 276, 830, 896, 1418
SstI GAGCTC 1 cut(s) 895
StyD4I CCNGG 2 cut(s) 9, 667
TaaI ACNGT 1 cut(s) 1450
TaiI ACGT 3 cut(s) 1188, 1257, 1531
TaqI TCGA 1 cut(s) 1204
TatI WGTACW 1 cut(s) 43
Tru1I TTAA 5 cut(s) 527, 615, 1140, 1295, 1392
Tru9I TTAA 5 cut(s) 527, 615, 1140, 1295, 1392
TscAI CASTG 6 cut(s) 109, 488, 608, 657, 1453, 1523
TseFI GTSAC 1 cut(s) 938
TseI GCWGC 6 cut(s) 182, 258, 767, 881, 1064, 1166
Tsp45I GTSAC 1 cut(s) 938
TspDTI ATGAA 7 cut(s) 130, 147, 189, 297, 332, 453, 525
TspRI CASTG 6 cut(s) 109, 488, 608, 657, 1453, 1523
Vha464I CTTAAG 1 cut(s) 526
VpaK11BI GGWCC 4 cut(s) 203, 360, 922, 1157
XapI RAATTY 6 cut(s) 581, 712, 986, 1146, 1200, 1435
XbaI TCTAGA 1 cut(s) 895
XspI CTAG 6 cut(s) 41, 123, 276, 830, 896, 1418
ZrmI AGTACT 1 cut(s) 45
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.