Rh6BG077500

E3 ubiquitin-protein ligase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0009109
Physical Location & Seq
Reverse (-)
11954530 .. 11960654
6125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG077500.1

Sequence Viewer

Length: 2883 bp
ATGGGGACACAGCCCCGCCGACCAGGGGCATTACAGGAATCCGAAAATAAAAATCCCCGCACTCACCCATCTCCTTCTTCCCACGACCCAACCCCCTCAAATCCAATTCGAGAGCGCAGACCGAGGAACCATCGATCACCAAAGCCGCCCCGGATTCGGACCCCCCTGACCCGACCCATGGAGATCGCCCCGGCGCCGCCACAGCTTTCAGACCGGGACGTCCTAAACGACGCCGCGTCGCTAAGCACCGTCAAAACGGCGCCGTCGGAGAGCAACAACGAGGCGAACGTGTCGACGTCGTCGTCGTCGGTGGCGGGGAAGTACGACGATGAGGAAGAGGAGGAGGACGTGTGCCGGATCTGTAGGAACCCTGGCGACGCCGATAACCCGCTCAGGTATCCATGCGCGTGTAGCGGAAGCATCAAGTTCGTGCACCAGGATTGTCTCCTACAGTGGCTCAATCACAGTAATGCTCGCCAATGCGAGGTTTGCAAGCATCCATTTTCCTTCTCTCCCGTTTATGCTGAGAATGCACCTGCTAGGCTTCCTTTTCAAGAGTTTGTGGTTGGGATGGCAATGAAAACTTGTCATGTTCTGCAATTTTTCCTGCGCCTTAGTTTTGTGCTTTCCGTTTGGCTCCTCATTATACCTTTCATCACATTTTGGATATGGCGGCTGGCTTTCGTGAGGAGTTTTGGTGAAGCTCAGAGATTATTCCTAAGTCATCTATCAACTACAGTCATTCTTACTGATTGTCTGCATGGGTTCCTACTTTCTGCTAGCATTGTGTTCATTTTTCTCGGAGCCACTTCTCTGAGGGATTACTTCAGGCATCTACGTGAGCTTGGAGGTCAAGATGTTGACAGAGAAGATGAAGCAGAAAGAAATGGCGCTCGTCCTGTAAGAAGAGTTCCTGGACAAGCTAATAGGAACTTTGTTGGGGATGCTAACGGGGAAGATGCTGCTGGAGCACAAGGGATTGCTGGAGCAGGTCAAATGATTAGAAGGAATGCAGAAAATGTGGCTGCTCGCTGGGAGATGCAGGCAGCTCGTCTTGAGGCTCATGTTGAACAGATGTTTGATGGTTTAGACGATGCCGATGGTGCAGAGGATGTACCATTTGACGAGCTTGTGGGCATGCAGGGACCTGTGTTTCATTTAGTGGAAAATGCATTTACTGTACTGGCAAGCAATATGATATTCCTTGGTGTAGTAATATTTGTGCCCTTCTCGTTAGGTCGGATTATACTCTATCATTTATCTTGGCTTTTCTCCACCGCTAGTGGTCCAGTTTTGTCAACAGTCATGCCACTCACTGAATCAGCCCTTTCCTTGGCTAATATGACTTTGAAGAATGCATTAACAGCTGTAACAAATTTATCAACCGATAGCGAGAAAAGTGGTATGGTTGGCCAGGTTGCAGAGATCTTGAAAGTTAACATGAGTGGACTGAATGAGGTTTCGAACAATAATGCAAGTTCAACACTTTCAGCAGACTTCCTGAAAGGGGCAACAATTGGAACTTCAAGGCTCTCTGATGTGACAACTCTTGCTATTGGATACATGTTTATATTCTCCCTAGTTTTCTTCTACCTTGGTATTGTGGCTTTCATTCGGTATACTAGGGGTGAGCCATTGACTGTGGGGAGGTTTTATGGTATTGCTTCAATGGCAGAAACAATTCCATCTCTCTTCAGGCAGTTCCTGGCAGCAATGAGGCATTTGATGACAATGATTAAGGTCGCTTTCCTTCTGGTCATTGAACTTGGAGTGTTCCCATTAATGTGTGGATGGTGGTTGGATGTTTGTACTATAAGGATGTTTGGGAAGTCCATGTCTCACAGGGTGCAGTTCTTCTCAGCATCTCCCTTAGCTAGCTCCCTGGTCCATTGGGTTGTAGGAATCGTATACATGCTACAAATAAGCATATTCGTCAGTCTTCTTCGAGGGGTTCTGCGTAATGGAGTTCTTTATTTCCTTAGAGATCCAGCTGATCCAAACTACAATCCCTTCCGTGATCTCATTGATGATCCTGTGCACAAGCATGCTCGCAGGGTCCTGTTATCCGTTGCGGTGTATGGGAGTTTAATTGTGATGCTGGTGTTTTTACCAGTTAAACTAGCTATGCGGATGGCACCTTCCATTTTTCCTCTTGACATTTCGGTATCTGACCCATTTACTGAAATTCCTGCGGACATGCTTCTATTTCAAATATGCATTCCATTTGCCATTGAGCATTTCAAATTACGGGCAACCATTAAATCCCTGCTCCGTTATTGGTTTACGGCAGTTGGCTGGGCACTTGGTTTAACAGATTTCTTACTACCCAGACCTGAGGATAACGTTGGACAGGAAAATGGAAATGCAGAGCCTGGAAGACAGGATAGACTACAGGTTCAATTGGGGCTACAGGATCAGGCTTTAGTGGCACTTCCAGGTGCTGATGAACCAAATCGAGGCCTTCTTGCATCAGGGGACGCGAATGTTGCAGAGGAGTATGACACTGATGAACAATCTGATTCTGAAAGGTATAGCTTTGTGCTTCGAATTGTCCTCTTGTTGGTGGTGGCTTGGATGACTTTACTCGTCTTCAACTCGGCCTTGATAGTTGTACCAACATCACTGGGAAGAACAATTTTCAATGTCATTCCTTTCCTCCCTATAACTCATGGCATCAAGTGCAACGATTTATATGCTTTCATCATTGGAAGCTACATAATATGGACTGCTGTAGCTGGAGTTAGATATTCTATTGAACACATTAGAACAAAAAGGGTTGCAGTTCTATTGGGCCAGATCTGGAAGTGGTGTAGCATTGTCATTAAGAGTTCTGCACTGTTGTCAATATGGGTAAGAGTCATTTGGTTTATTTTTCTTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0001101 GO:0002020 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006629 GO:0006720 GO:0006725 GO:0006807 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009414 GO:0009415 GO:0009628 GO:0009698 GO:0009699 GO:0009893 GO:0009987 GO:0010025 GO:0010033 GO:0010035 GO:0010143 GO:0010166 GO:0010243 GO:0010345 GO:0010498 GO:0012505 GO:0016020 GO:0016021 GO:0016567 GO:0016740 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030176 GO:0030433 GO:0031224 GO:0031227 GO:0031624 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042175 GO:0042221 GO:0042335 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0048518 GO:0048856 GO:0050789 GO:0050790 GO:0050896 GO:0051341 GO:0051353 GO:0051603 GO:0051716 GO:0065007 GO:0065009 GO:0070647 GO:0070936 GO:0071704 GO:0098827 GO:0140096 GO:1900490 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901568 GO:1901570 GO:1901575 GO:1901576 GO:1901698 GO:1901700 GO:1990381 GO:2001215
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
RINGv

Protein Analysis

960

Amino Acids

106.92

Weight (kDa)

6.42

Isoelectric Point (pI)

42.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 118 - 164 8.4e-17 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 544
AasI GACNNNNNNGTC 2 cut(s) 218, 301
AatII GACGTC 2 cut(s) 222, 299
Acc36I ACCTGC 2 cut(s) 544, 980
AccB1I GGYRCC 3 cut(s) 193, 259, 2134
AccBSI CCGCTC 1 cut(s) 391
AccI GTMKAC 3 cut(s) 293, 1619, 1908
AccII CGCG 3 cut(s) 236, 407, 2480
AclI AACGTT 1 cut(s) 2343
AclWI GGATC 5 cut(s) 365, 1979, 1988, 2024, 2421
AcoI YGGCCR 1 cut(s) 1411
AcsI RAATTY 2 cut(s) 1375, 2184
AcuI CTGAAG 2 cut(s) 811, 1678
AcyI GRCGYC 6 cut(s) 194, 219, 231, 260, 296, 378
AdeI CACNNNGTG 1 cut(s) 1846
AfaI GTAC 5 cut(s) 323, 1116, 1182, 1810, 2613
AfiI CCNNNNNNNGG 8 cut(s) 25, 156, 178, 484, 1333, 1507, 2456, 2560
AflIII ACRYGT 3 cut(s) 288, 348, 1563
AhdI GACNNNNNGTC 1 cut(s) 235
AjiI CACGTC 1 cut(s) 349
AjnI CCWGG 9 cut(s) 22, 370, 435, 913, 1413, 1704, 1881, 2371, 2434
Alw21I GWGCWC 3 cut(s) 435, 973, 2040
Alw26I GTCTC 2 cut(s) 449, 1842
Alw44I GTGCAC 2 cut(s) 431, 2036
AlwI GGATC 5 cut(s) 365, 1979, 1988, 2024, 2421
AlwNI CAGNNNCTG 3 cut(s) 1705, 2372, 2441
AoxI GGCC 4 cut(s) 1411, 2458, 2598, 2791
ApaLI GTGCAC 2 cut(s) 431, 2036
ApeKI GCWGC 4 cut(s) 962, 1025, 1046, 1709
ApoI RAATTY 2 cut(s) 1375, 2184
AseI ATTAAT 1 cut(s) 1781
Asp700I GAANNNNTTC 1 cut(s) 1680
AspLEI GCGC 6 cut(s) 117, 196, 262, 407, 612, 893
AspS9I GGNCC 6 cut(s) 159, 1145, 1286, 1885, 2056, 2791
AsuC2I CCSGG 3 cut(s) 151, 191, 215
AsuHPI GGTGA 4 cut(s) 56, 129, 710, 1640
AsuII TTCGAA 2 cut(s) 1463, 2545
AsuNHI GCTAGC 2 cut(s) 779, 1874
AvaII GGWCC 5 cut(s) 159, 1145, 1286, 1885, 2056
AxyI CCTNAGG 1 cut(s) 2334
BaeGI GKGCMC 4 cut(s) 435, 1227, 2040, 2302
BalI TGGCCA 1 cut(s) 1413
BanI GGYRCC 3 cut(s) 193, 259, 2134
BbsI GAAGAC 3 cut(s) 1931, 2383, 2581
Bbv12I GWGCWC 3 cut(s) 435, 973, 2040
BbvI GCAGC 4 cut(s) 949, 1012, 1058, 1721
BccI CCATC 8 cut(s) 76, 138, 565, 1076, 1094, 1693, 1785, 2125
BceAI ACGGC 3 cut(s) 247, 273, 2301
BcgI CGANNNNNNTGC 6 cut(s) 409, 443, 1031, 1065, 2675, 2709
BciT130I CCWGG 9 cut(s) 24, 372, 437, 915, 1415, 1706, 1883, 2373, 2436
BciVI GTATCC 2 cut(s) 408, 1553
BcnI CCSGG 3 cut(s) 151, 191, 215
BcoDI GTCTC 2 cut(s) 449, 1842
BfaI CTAG 7 cut(s) 540, 780, 1281, 1580, 1623, 1875, 2120
BfmI CTRYAG 6 cut(s) 361, 449, 735, 2390, 2408, 2730
BfoI RGCGCY 3 cut(s) 197, 263, 894
BfuAI ACCTGC 2 cut(s) 544, 980
BfuI GTATCC 2 cut(s) 408, 1553
BglII AGATCT 2 cut(s) 1425, 2796
BisI GCNGC 8 cut(s) 146, 197, 234, 674, 963, 1026, 1047, 1710
BlpI GCTNAGC 1 cut(s) 242
BlsI GCNGC 8 cut(s) 147, 198, 235, 675, 964, 1027, 1048, 1711
Bme18I GGWCC 5 cut(s) 159, 1145, 1286, 1885, 2056
BmeRI GACNNNNNGTC 1 cut(s) 235
BmgBI CACGTC 1 cut(s) 349
BmgT120I GGNCC 6 cut(s) 159, 1145, 1286, 1885, 2056, 2791
BmrI ACTGGG 1 cut(s) 2633
BmtI GCTAGC 2 cut(s) 783, 1878
BmuI ACTGGG 1 cut(s) 2633
BpiI GAAGAC 3 cut(s) 1931, 2383, 2581
BpmI CTGGAG 3 cut(s) 987, 1005, 2757
Bpu10I CCTNAGC 2 cut(s) 392, 1870
Bpu1102I GCTNAGC 1 cut(s) 242
Bpu14I TTCGAA 2 cut(s) 1463, 2545
BpuEI CTTGAG 1 cut(s) 1076
BpuMI CCSGG 3 cut(s) 151, 191, 215
Bsa29I ATCGAT 1 cut(s) 133
BsaAI YACGTR 1 cut(s) 839
BsaHI GRCGYC 6 cut(s) 194, 219, 231, 260, 296, 378
BsaXI ACNNNNNCTCC 4 cut(s) 335, 365, 682, 712
Bsc4I CCNNNNNNNGG 8 cut(s) 25, 156, 178, 484, 1333, 1507, 2456, 2560
Bse1I ACTGG 4 cut(s) 1188, 1289, 2111, 2628
Bse21I CCTNAGG 1 cut(s) 2334
Bse3DI GCAATG 2 cut(s) 582, 1719
BseBI CCWGG 9 cut(s) 24, 372, 437, 915, 1415, 1706, 1883, 2373, 2436
BseCI ATCGAT 1 cut(s) 133
BseGI GGATG 9 cut(s) 496, 576, 949, 1117, 1796, 1807, 1824, 2136, 2580
BseLI CCNNNNNNNGG 8 cut(s) 25, 156, 178, 484, 1333, 1507, 2456, 2560
BseMI GCAATG 2 cut(s) 582, 1719
BseMII CTCAG 6 cut(s) 406, 516, 719, 806, 1872, 2325
BseNI ACTGG 4 cut(s) 1188, 1289, 2111, 2628
BseRI GAGGAG 5 cut(s) 353, 356, 629, 703, 2507
BseSI GKGCMC 4 cut(s) 435, 1227, 2040, 2302
BseXI GCAGC 4 cut(s) 949, 1012, 1058, 1721
BseYI CCCAGC 2 cut(s) 1032, 2295
BsgI GTGCAG 3 cut(s) 1125, 1868, 2817
Bsh1236I CGCG 3 cut(s) 236, 407, 2480
BshFI GGCC 4 cut(s) 1413, 2460, 2600, 2793
BshNI GGYRCC 3 cut(s) 193, 259, 2134
BshVI ATCGAT 1 cut(s) 133
BsiHKAI GWGCWC 3 cut(s) 435, 973, 2040
BsiSI CCGG 4 cut(s) 151, 191, 214, 355
BslFI GGGAC 4 cut(s) 19, 230, 1158, 2489
BslI CCNNNNNNNGG 8 cut(s) 25, 156, 178, 484, 1333, 1507, 2456, 2560
BsmAI GTCTC 2 cut(s) 449, 1842
BsmFI GGGAC 4 cut(s) 19, 230, 1158, 2489
BsmI GAATGC 4 cut(s) 535, 1015, 1360, 2217
BsnI GGCC 4 cut(s) 1413, 2460, 2600, 2793
Bsp119I TTCGAA 2 cut(s) 1463, 2545
Bsp1286I GDGCHC 5 cut(s) 435, 973, 1227, 2040, 2302
Bsp1720I GCTNAGC 1 cut(s) 242
Bsp19I CCATGG 1 cut(s) 177
BspANI GGCC 4 cut(s) 1413, 2460, 2600, 2793
BspCNI CTCAG 6 cut(s) 405, 517, 718, 807, 1871, 2326
BspDI ATCGAT 1 cut(s) 133
BspFNI CGCG 3 cut(s) 236, 407, 2480
BspMI ACCTGC 2 cut(s) 544, 980
BspOI GCTAGC 2 cut(s) 783, 1878
BspPI GGATC 5 cut(s) 365, 1979, 1988, 2024, 2421
BspT104I TTCGAA 2 cut(s) 1463, 2545
BspT107I GGYRCC 3 cut(s) 193, 259, 2134
BsrBI CCGCTC 1 cut(s) 391
BsrDI GCAATG 2 cut(s) 582, 1719
BsrI ACTGG 4 cut(s) 1188, 1289, 2111, 2628
BssNAI GTATAC 2 cut(s) 1620, 1909
BssNI GRCGYC 6 cut(s) 194, 219, 231, 260, 296, 378
BssT1I CCWWGG 4 cut(s) 177, 1204, 1332, 1594
Bst1107I GTATAC 2 cut(s) 1620, 1909
Bst2UI CCWGG 9 cut(s) 24, 372, 437, 915, 1415, 1706, 1883, 2373, 2436
Bst4CI ACNGT 8 cut(s) 250, 453, 467, 739, 1180, 1303, 1642, 2838
Bst6I CTCTTC 3 cut(s) 330, 901, 1697
BstACI GRCGYC 6 cut(s) 194, 219, 231, 260, 296, 378
BstAPI GCANNNNNTGC 1 cut(s) 2679
BstBAI YACGTR 1 cut(s) 839
BstBI TTCGAA 2 cut(s) 1463, 2545
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 9 cut(s) 496, 576, 949, 1117, 1796, 1807, 1824, 2136, 2580
BstFNI CGCG 3 cut(s) 236, 407, 2480
BstH2I RGCGCY 3 cut(s) 197, 263, 894
BstHHI GCGC 6 cut(s) 117, 196, 262, 407, 612, 893
BstMAI GTCTC 2 cut(s) 449, 1842
BstNI CCWGG 9 cut(s) 24, 372, 437, 915, 1415, 1706, 1883, 2373, 2436
BstNSI RCATGY 5 cut(s) 1141, 1567, 1915, 2048, 2200
BstSFI CTRYAG 6 cut(s) 361, 449, 735, 2390, 2408, 2730
BstSLI GKGCMC 4 cut(s) 435, 1227, 2040, 2302
BstUI CGCG 3 cut(s) 236, 407, 2480
BstV1I GCAGC 4 cut(s) 949, 1012, 1058, 1721
BstV2I GAAGAC 3 cut(s) 1931, 2383, 2581
BstX2I RGATCY 4 cut(s) 357, 1425, 1984, 2796
BstYI RGATCY 4 cut(s) 357, 1425, 1984, 2796
BstZ17I GTATAC 2 cut(s) 1620, 1909
Bsu15I ATCGAT 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 2334
BsuI GTATCC 2 cut(s) 408, 1553
BsuRI GGCC 4 cut(s) 1413, 2460, 2600, 2793
BsuTUI ATCGAT 1 cut(s) 133
BtgI CCRYGG 1 cut(s) 177
BtrI CACGTC 1 cut(s) 349
BtsCI GGATG 9 cut(s) 496, 576, 949, 1117, 1796, 1807, 1824, 2136, 2580
BtsIMutI CAGTG 5 cut(s) 458, 1314, 2502, 2621, 2834
BveI ACCTGC 2 cut(s) 544, 980
CaiI CAGNNNCTG 3 cut(s) 1705, 2372, 2441
CfoI GCGC 6 cut(s) 117, 196, 262, 407, 612, 893
Cfr13I GGNCC 6 cut(s) 159, 1145, 1286, 1885, 2056, 2791
ClaI ATCGAT 1 cut(s) 133
CseI GACGC 4 cut(s) 225, 239, 386, 2486
Csp6I GTAC 5 cut(s) 322, 1115, 1181, 1809, 2612
CviQI GTAC 5 cut(s) 322, 1115, 1181, 1809, 2612
DinI GGCGCC 2 cut(s) 195, 261
DraIII CACNNNGTG 1 cut(s) 1846
DrdI GACNNNNNNGTC 2 cut(s) 218, 301
DriI GACNNNNNGTC 1 cut(s) 235
DseDI GACNNNNNNGTC 2 cut(s) 218, 301
EaeI YGGCCR 1 cut(s) 1411
Eam1104I CTCTTC 3 cut(s) 330, 901, 1697
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 3 cut(s) 330, 901, 1697
Eco130I CCWWGG 4 cut(s) 177, 1204, 1332, 1594
Eco147I AGGCCT 1 cut(s) 2460
Eco47I GGWCC 5 cut(s) 159, 1145, 1286, 1885, 2056
Eco57I CTGAAG 2 cut(s) 811, 1678
Eco81I CCTNAGG 1 cut(s) 2334
EcoO109I RGGNCCY 2 cut(s) 1145, 2056
EcoRII CCWGG 9 cut(s) 22, 370, 435, 913, 1413, 1704, 1881, 2371, 2434
EcoT14I CCWWGG 4 cut(s) 177, 1204, 1332, 1594
EcoT22I ATGCAT 3 cut(s) 1174, 1360, 2219
EgeI GGCGCC 2 cut(s) 195, 261
EheI GGCGCC 2 cut(s) 195, 261
ErhI CCWWGG 4 cut(s) 177, 1204, 1332, 1594
FaqI GGGAC 4 cut(s) 19, 230, 1158, 2489
FauI CCCGC 4 cut(s) 23, 65, 307, 396
FblI GTMKAC 3 cut(s) 293, 1619, 1908
Fnu4HI GCNGC 8 cut(s) 146, 197, 234, 674, 963, 1026, 1047, 1710
FokI GGATG 9 cut(s) 483, 583, 956, 1124, 1803, 1814, 1831, 2143, 2587
Fsp4HI GCNGC 8 cut(s) 146, 197, 234, 674, 963, 1026, 1047, 1710
FspBI CTAG 7 cut(s) 540, 780, 1281, 1580, 1623, 1875, 2120
GlaI GCGC 6 cut(s) 116, 195, 261, 406, 611, 892
GluI GCNGC 8 cut(s) 146, 197, 234, 674, 963, 1026, 1047, 1710
GsaI CCCAGC 2 cut(s) 1036, 2299
GsuI CTGGAG 3 cut(s) 987, 1005, 2757
HaeII RGCGCY 3 cut(s) 197, 263, 894
HaeIII GGCC 4 cut(s) 1413, 2460, 2600, 2793
HapII CCGG 4 cut(s) 151, 191, 214, 355
HgaI GACGC 4 cut(s) 225, 239, 386, 2486
HhaI GCGC 6 cut(s) 117, 196, 262, 407, 612, 893
Hin1I GRCGYC 6 cut(s) 194, 219, 231, 260, 296, 378
Hin6I GCGC 6 cut(s) 115, 194, 260, 405, 610, 891
HinP1I GCGC 6 cut(s) 115, 194, 260, 405, 610, 891
HincII GTYRAC 4 cut(s) 294, 862, 1299, 1438
HindII GTYRAC 4 cut(s) 294, 862, 1299, 1438
HinfI GANTC 6 cut(s) 38, 154, 1319, 1902, 2519, 2856
HpaI GTTAAC 1 cut(s) 1438
HpaII CCGG 4 cut(s) 151, 191, 214, 355
HphI GGTGA 4 cut(s) 56, 129, 710, 1640
Hpy188III TCNNGA 9 cut(s) 110, 554, 685, 854, 1055, 1429, 1501, 2153, 2800
HpyAV CCTTC 8 cut(s) 84, 517, 999, 1237, 1760, 2020, 2148, 2471
HpyCH4III ACNGT 8 cut(s) 250, 453, 467, 739, 1180, 1303, 1642, 2838
HpyCH4IV ACGT 6 cut(s) 219, 288, 296, 348, 838, 2343
HpySE526I ACGT 6 cut(s) 219, 288, 296, 348, 838, 2343
Hsp92I GRCGYC 6 cut(s) 194, 219, 231, 260, 296, 378
HspAI GCGC 6 cut(s) 115, 194, 260, 405, 610, 891
KasI GGCGCC 2 cut(s) 193, 259
KspAI GTTAAC 1 cut(s) 1438
LmnI GCTCC 6 cut(s) 642, 803, 968, 986, 1883, 2274
Lsp1109I GCAGC 4 cut(s) 949, 1012, 1058, 1721
MaeI CTAG 7 cut(s) 540, 780, 1281, 1580, 1623, 1875, 2120
MaeII ACGT 6 cut(s) 219, 288, 296, 348, 838, 2343
MaeIII GTNAC 2 cut(s) 1369, 1540
MbiI CCGCTC 1 cut(s) 391
MfeI CAATTG 2 cut(s) 1515, 2399
MflI RGATCY 4 cut(s) 357, 1425, 1984, 2796
MhlI GDGCHC 5 cut(s) 435, 973, 1227, 2040, 2302
MlsI TGGCCA 1 cut(s) 1413
MluNI TGGCCA 1 cut(s) 1413
Mly113I GGCGCC 2 cut(s) 194, 260
MlyI GAGTC 1 cut(s) 2865
MmeI TCCRAC 4 cut(s) 246, 1220, 1779, 2326
Mox20I TGGCCA 1 cut(s) 1413
Mph1103I ATGCAT 3 cut(s) 1174, 1360, 2219
MroXI GAANNNNTTC 1 cut(s) 1680
MscI TGGCCA 1 cut(s) 1413
MseI TTAA 9 cut(s) 1361, 1437, 1737, 1781, 2087, 2115, 2259, 2309, 2823
MslI CAYNNNNRTG 5 cut(s) 406, 468, 837, 1783, 2043
Msp20I TGGCCA 1 cut(s) 1413
MspA1I CMGCKG 2 cut(s) 1367, 1991
MspI CCGG 4 cut(s) 151, 191, 214, 355
MunI CAATTG 2 cut(s) 1515, 2399
Mva1269I GAATGC 4 cut(s) 535, 1015, 1360, 2217
MvaI CCWGG 9 cut(s) 24, 372, 437, 915, 1415, 1706, 1883, 2373, 2436
MvnI CGCG 3 cut(s) 236, 407, 2480
NarI GGCGCC 2 cut(s) 194, 260
NciI CCSGG 3 cut(s) 151, 191, 215
NcoI CCATGG 1 cut(s) 177
NheI GCTAGC 2 cut(s) 779, 1874
NmeAIII GCCGAG 1 cut(s) 2576
NmuCI GTSAC 1 cut(s) 1540
NsiI ATGCAT 3 cut(s) 1174, 1360, 2219
NspI RCATGY 5 cut(s) 1141, 1567, 1915, 2048, 2200
NspV TTCGAA 2 cut(s) 1463, 2545
PaeI GCATGC 2 cut(s) 1141, 2048
PaqCI CACCTGC 1 cut(s) 544
PceI AGGCCT 1 cut(s) 2460
PciI ACATGT 1 cut(s) 1563
PcsI WCGNNNNNNNCGW 4 cut(s) 225, 285, 299, 302
PctI GAATGC 4 cut(s) 535, 1015, 1360, 2217
PdmI GAANNNNTTC 1 cut(s) 1680
PfeI GAWTC 5 cut(s) 38, 154, 1319, 1902, 2519
PflFI GACNNNGTC 1 cut(s) 298
PfoI TCCNGGA 1 cut(s) 913
PkrI GCNGC 8 cut(s) 147, 198, 235, 675, 964, 1027, 1048, 1711
PleI GAGTC 1 cut(s) 2864
PluTI GGCGCC 2 cut(s) 197, 263
PpsI GAGTC 1 cut(s) 2864
Ppu21I YACGTR 1 cut(s) 839
PpuMI RGGWCCY 2 cut(s) 1145, 2056
PscI ACATGT 1 cut(s) 1563
PshBI ATTAAT 1 cut(s) 1781
Psp1406I AACGTT 1 cut(s) 2343
Psp5II RGGWCCY 2 cut(s) 1145, 2056
Psp6I CCWGG 9 cut(s) 22, 370, 435, 913, 1413, 1704, 1881, 2371, 2434
PspFI CCCAGC 2 cut(s) 1032, 2295
PspGI CCWGG 9 cut(s) 22, 370, 435, 913, 1413, 1704, 1881, 2371, 2434
PspPI GGNCC 6 cut(s) 159, 1145, 1286, 1885, 2056, 2791
PspPPI RGGWCCY 2 cut(s) 1145, 2056
PsrI GAACNNNNNNTAC 2 cut(s) 894, 926
PstNI CAGNNNCTG 3 cut(s) 1705, 2372, 2441
PsuI RGATCY 4 cut(s) 357, 1425, 1984, 2796
PsyI GACNNNGTC 1 cut(s) 298
PvuII CAGCTG 2 cut(s) 1367, 1991
RsaI GTAC 5 cut(s) 323, 1116, 1182, 1810, 2613
RsaNI GTAC 5 cut(s) 322, 1115, 1181, 1809, 2612
RseI CAYNNNNRTG 5 cut(s) 406, 468, 837, 1783, 2043
SalI GTCGAC 1 cut(s) 292
SaqAI TTAA 9 cut(s) 1361, 1437, 1737, 1781, 2087, 2115, 2259, 2309, 2823
SatI GCNGC 8 cut(s) 146, 197, 234, 674, 963, 1026, 1047, 1710
Sau96I GGNCC 6 cut(s) 159, 1145, 1286, 1885, 2056, 2791
SchI GAGTC 1 cut(s) 2865
SduI GDGCHC 5 cut(s) 435, 973, 1227, 2040, 2302
SfcI CTRYAG 6 cut(s) 361, 449, 735, 2390, 2408, 2730
SfoI GGCGCC 2 cut(s) 195, 261
SfuI TTCGAA 2 cut(s) 1463, 2545
SinI GGWCC 5 cut(s) 159, 1145, 1286, 1885, 2056
SmiMI CAYNNNNRTG 5 cut(s) 406, 468, 837, 1783, 2043
SmlI CTYRAG 1 cut(s) 1055
SmoI CTYRAG 1 cut(s) 1055
SphI GCATGC 2 cut(s) 1141, 2048
SseBI AGGCCT 1 cut(s) 2460
SspDI GGCGCC 2 cut(s) 193, 259
SspI AATATT 1 cut(s) 1218
SspMI CTAG 7 cut(s) 540, 780, 1281, 1580, 1623, 1875, 2120
StuI AGGCCT 1 cut(s) 2460
StyI CCWWGG 4 cut(s) 177, 1204, 1332, 1594
TaaI ACNGT 8 cut(s) 250, 453, 467, 739, 1180, 1303, 1642, 2838
TaiI ACGT 6 cut(s) 222, 291, 299, 351, 841, 2346
TaqI TCGA 7 cut(s) 109, 133, 293, 1463, 1945, 2455, 2545
TaqII GACCGA 1 cut(s) 136
TatI WGTACW 2 cut(s) 1180, 1808
TauI GCSGC 4 cut(s) 148, 199, 236, 676
TfiI GAWTC 5 cut(s) 38, 154, 1319, 1902, 2519
Tru1I TTAA 9 cut(s) 1361, 1437, 1737, 1781, 2087, 2115, 2259, 2309, 2823
Tru9I TTAA 9 cut(s) 1361, 1437, 1737, 1781, 2087, 2115, 2259, 2309, 2823
TscAI CASTG 5 cut(s) 458, 1321, 2509, 2628, 2841
TseFI GTSAC 1 cut(s) 1540
TseI GCWGC 4 cut(s) 962, 1025, 1046, 1709
Tsp45I GTSAC 1 cut(s) 1540
TspDTI ATGAA 9 cut(s) 593, 643, 781, 888, 1145, 1600, 2460, 2523, 2689
TspGWI ACGGA 4 cut(s) 619, 2003, 2056, 2261
TspRI CASTG 5 cut(s) 458, 1321, 2509, 2628, 2841
Tth111I GACNNNGTC 1 cut(s) 298
VneI GTGCAC 2 cut(s) 431, 2036
VpaK11BI GGWCC 5 cut(s) 159, 1145, 1286, 1885, 2056
VspI ATTAAT 1 cut(s) 1781
XapI RAATTY 2 cut(s) 1375, 2184
XceI RCATGY 5 cut(s) 1141, 1567, 1915, 2048, 2200
XmiI GTMKAC 3 cut(s) 293, 1619, 1908
XmnI GAANNNNTTC 1 cut(s) 1680
XspI CTAG 7 cut(s) 540, 780, 1281, 1580, 1623, 1875, 2120
ZraI GACGTC 2 cut(s) 220, 297
Zsp2I ATGCAT 3 cut(s) 1174, 1360, 2219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.