Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002895

Physical Location & Seq

Genomic Coordinates Forward (+)

16614204 .. 16615313

Gene Structure 1110 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCGAACCCTAGAGTTTTCTTCGACATGAGTCTCAGCGGTACTCCCATCGGACGGATCGAGATGGAGCTTTTCGCTGATACAACCCCAAACACGGCGGAGAATTTCCGTGCTCTCTGTACCGGCGAGAAAGGAATGGGAAAGCTAGGTAAGCCACTTCACTTCAAAGGATCGATCTTCCACCGTGTGATTCCCGGATTCATGTGTCAAGGAGGTGATTTCACCGCCAAGAACGGAACCGGTGGTGAATCGATCTACGGTGCTAAGTTCAAGGACGAGAACTTTATCAAGAAGCATACAGGAGCTGGGATTCTCTCAATGGCTAACTCTGGTCCTAACACTAACGGATCTCAGTTCTTCATCTGTACCGATAAGACGTCGTGGTTAGATGGTAAGCACGTTGTGTTTGGACAAGTTGTTAAAGGCTTGGACGTCGTGAAGGCGATTGAGAAAGTTGGATCTGATTCTGGAAAGACTTCCAAAGTCGTTACCATCACTGATTGTGGTCAGCTTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006464 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0023052 GO:0030054 GO:0031090 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

172

Amino Acids

18.38

Weight (kDa)

8.9

Isoelectric Point (pI)

6.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	8 - 169	1.3e-50	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34870
fragaria_vesca	FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_6g42250 FvH4_7g21680 FvH4_7g21700
malus_domestica	MD03G1257000.v1.1 MD11G1277600.v1.1
prunus_persica	Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1
pyrus_communis	pycom03g20370 pycom11g24550
rosa_chinensis	RchiOBHm_Chr6g0289781
rosa_laevigata	RLG00000012267 RLG00000027155
rosa_multiflora	Rmu_sc0005640.1_g000007
rosa_roxburghii	Rroxscaffold_1G00032710 Rroxscaffold_7G00177550 Rroxscaffold_7G00178070
rosa_rugosa	Rorug06G0206700 Rorug06G0206800 Rorug06G0206900 Rorug06G0207000
rosa_samantha	Rh1BG318900 Rh1CG332900 Rh1DG349500 Rh6AG318400 Rh6BG325700 Rh6CG331600 Rh6DG317000
rosa_wichuraiana	Rw6G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	380, 435
AciI	CCGC	3 cut(s)	39, 98, 225
AclWI	GGATC	4 cut(s)	65, 178, 355, 466
AcsI	RAATTY	1 cut(s)	103
AcyI	GRCGYC	2 cut(s)	377, 432
AdeI	CACNNNGTG	2 cut(s)	187, 403
AfaI	GTAC	3 cut(s)	43, 121, 367
AfiI	CCNNNNNNNGG	2 cut(s)	54, 94
AgeI	ACCGGT	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	166, 271
AluBI	AGCT	4 cut(s)	70, 145, 305, 511
AluI	AGCT	4 cut(s)	70, 145, 305, 511
Alw21I	GWGCWC	1 cut(s)	115
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	4 cut(s)	65, 178, 355, 466
AlwNI	CAGNNNCTG	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	103
AsiGI	ACCGGT	1 cut(s)	239
Asp700I	GAANNNNTTC	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	3 cut(s)	214, 227, 257
AvaII	GGWCC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	115
BccI	CCATC	4 cut(s)	56, 58, 383, 500
BceAI	ACGGC	1 cut(s)	111
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	2 cut(s)	12, 146
Bme1390I	CCNGG	1 cut(s)	195
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	238
BmrFI	CCNGG	1 cut(s)	195
BoxI	GACNNNNGTC	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	195
Bsa29I	ATCGAT	2 cut(s)	173, 251
BsaHI	GRCGYC	2 cut(s)	377, 432
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 94
Bse118I	RCCGGY	2 cut(s)	122, 239
BseCI	ATCGAT	2 cut(s)	173, 251
BseLI	CCNNNNNNNGG	2 cut(s)	54, 94
BseMII	CTCAG	2 cut(s)	49, 365
BseYI	CCCAGC	1 cut(s)	305
BshTI	ACCGGT	1 cut(s)	239
BshVI	ATCGAT	2 cut(s)	173, 251
BsiHKAI	GWGCWC	1 cut(s)	115
BsiSI	CCGG	3 cut(s)	123, 195, 240
BslI	CCNNNNNNNGG	2 cut(s)	54, 94
BsmAI	GTCTC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	115
Bsp143I	GATC	6 cut(s)	57, 170, 174, 252, 347, 458
BspACI	CCGC	3 cut(s)	39, 98, 225
BspCNI	CTCAG	2 cut(s)	48, 364
BspDI	ATCGAT	2 cut(s)	173, 251
BspLI	GGNNCC	1 cut(s)	238
BspPI	GGATC	4 cut(s)	65, 178, 355, 466
BsrFI	RCCGGY	2 cut(s)	122, 239
BssAI	RCCGGY	2 cut(s)	122, 239
BssMI	GATC	6 cut(s)	57, 170, 174, 252, 347, 458
BssNI	GRCGYC	2 cut(s)	377, 432
Bst4CI	ACNGT	2 cut(s)	185, 260
BstACI	GRCGYC	2 cut(s)	377, 432
BstDEI	CTNAG	4 cut(s)	35, 264, 351, 516
BstKTI	GATC	6 cut(s)	60, 173, 177, 255, 350, 461
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	6 cut(s)	57, 170, 174, 252, 347, 458
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstPAI	GACNNNNGTC	1 cut(s)	30
BstSCI	CCNGG	1 cut(s)	193
BstX2I	RGATCY	2 cut(s)	347, 458
BstYI	RGATCY	2 cut(s)	347, 458
Bsu15I	ATCGAT	2 cut(s)	173, 251
BsuTUI	ATCGAT	2 cut(s)	173, 251
BtsIMutI	CAGTG	1 cut(s)	495
CaiI	CAGNNNCTG	1 cut(s)	305
Cfr10I	RCCGGY	2 cut(s)	122, 239
Cfr13I	GGNCC	1 cut(s)	332
ClaI	ATCGAT	2 cut(s)	173, 251
Csp6I	GTAC	3 cut(s)	42, 120, 366
CspAI	ACCGGT	1 cut(s)	239
CviAII	CATG	2 cut(s)	28, 202
CviJI	RGCY	7 cut(s)	70, 145, 154, 305, 323, 426, 511
CviKI_1	RGCY	7 cut(s)	70, 145, 154, 305, 323, 426, 511
CviQI	GTAC	3 cut(s)	42, 120, 366
DdeI	CTNAG	4 cut(s)	35, 264, 351, 516
DpnI	GATC	6 cut(s)	59, 172, 176, 254, 349, 460
DpnII	GATC	6 cut(s)	57, 170, 174, 252, 347, 458
DraIII	CACNNNGTG	2 cut(s)	187, 403
EciI	GGCGGA	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	332
FaeI	CATG	2 cut(s)	31, 205
FaiI	YATR	3 cut(s)	29, 203, 297
FatI	CATG	2 cut(s)	27, 201
FspBI	CTAG	2 cut(s)	12, 146
GsaI	CCCAGC	1 cut(s)	309
HapII	CCGG	3 cut(s)	123, 195, 240
Hin1I	GRCGYC	2 cut(s)	377, 432
Hin1II	CATG	2 cut(s)	31, 205
HinfI	GANTC	6 cut(s)	31, 190, 198, 248, 310, 464
HpaII	CCGG	3 cut(s)	123, 195, 240
HphI	GGTGA	3 cut(s)	214, 227, 257
Hpy188I	TCNGA	2 cut(s)	53, 463
Hpy188III	TCNNGA	4 cut(s)	61, 289, 436, 468
Hpy99I	CGWCG	2 cut(s)	382, 437
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	2 cut(s)	185, 260
HpyCH4IV	ACGT	3 cut(s)	377, 399, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	4 cut(s)	35, 264, 351, 516
HpySE526I	ACGT	3 cut(s)	377, 399, 432
Hsp92I	GRCGYC	2 cut(s)	377, 432
Hsp92II	CATG	2 cut(s)	31, 205
Kzo9I	GATC	6 cut(s)	57, 170, 174, 252, 347, 458
LmnI	GCTCC	2 cut(s)	67, 302
LpnPI	CCDG	7 cut(s)	136, 208, 253, 285, 291, 315, 453
MaeI	CTAG	2 cut(s)	12, 146
MaeII	ACGT	3 cut(s)	377, 399, 432
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	6 cut(s)	59, 172, 176, 254, 349, 460
MboI	GATC	6 cut(s)	57, 170, 174, 252, 347, 458
MboII	GAAGA	3 cut(s)	13, 169, 349
MflI	RGATCY	2 cut(s)	347, 458
MhlI	GDGCHC	1 cut(s)	115
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	1 cut(s)	206
MroXI	GAANNNNTTC	1 cut(s)	475
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	3 cut(s)	123, 195, 240
MspR9I	CCNGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	151
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	6 cut(s)	57, 170, 174, 252, 347, 458
NlaIII	CATG	2 cut(s)	31, 205
NlaIV	GGNNCC	1 cut(s)	238
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	1 cut(s)	475
PfeI	GAWTC	5 cut(s)	190, 198, 248, 310, 464
PfoI	TCCNGGA	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	239
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PshAI	GACNNNNGTC	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	332
PstNI	CAGNNNCTG	1 cut(s)	305
PsuI	RGATCY	2 cut(s)	347, 458
RsaI	GTAC	3 cut(s)	43, 121, 367
RsaNI	GTAC	3 cut(s)	42, 120, 366
SaqAI	TTAA	1 cut(s)	420
Sau3AI	GATC	6 cut(s)	57, 170, 174, 252, 347, 458
Sau96I	GGNCC	1 cut(s)	332
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	1 cut(s)	115
SetI	ASST	9 cut(s)	72, 147, 151, 217, 307, 380, 402, 435, 513
SinI	GGWCC	1 cut(s)	332
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	3 cut(s)	39, 98, 225
SspMI	CTAG	2 cut(s)	12, 146
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	185, 260
TaiI	ACGT	3 cut(s)	380, 402, 435
TaqI	TCGA	5 cut(s)	5, 24, 60, 173, 251
TasI	AATT	1 cut(s)	103
TfiI	GAWTC	5 cut(s)	190, 198, 248, 310, 464
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TscAI	CASTG	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	190, 349
TspGWI	ACGGA	4 cut(s)	70, 98, 249, 360
TspRI	CASTG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	475
XspI	CTAG	2 cut(s)	12, 146
ZraI	GACGTC	2 cut(s)	378, 433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.