Rroxscaffold_1G00032710

peptidyl-prolyl cis-trans isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002895
Physical Location & Seq
Reverse (-)
47000908 .. 47001319
412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00032710.1

Sequence Viewer

Length: 297 bp
ATGAGATTCGGTGATACGACGATAGTAACTTGTACTGATGAAAAGATAGGCAAGCATGATGAGCCATATCTACTGTCCATGGCAAACCATGACAAGATAATGACGATTGGCTCTCAGTTCTTCATTACATTCTCCAGTTTGACTCATCTCGACGGGAGACACGTTGTCTTCGGCAAGGTTGTGGATGGGATCGATATACTCAAGGAGATGGAGCACGTCCCAACATTTTTAGGTAGACCACAGGTTCCAGTGGAGATCGTAGGATGTGGTGATGTTCTAGAGGAGCAGACACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIAA1430 Pro_isomerase

Protein Analysis

98

Amino Acids

10.96

Weight (kDa)

4.98

Isoelectric Point (pI)

26.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 12 - 90 1.3e-19 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AclWI GGATC 1 cut(s) 197
AfaI GTAC 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 160
AhdI GACNNNNNGTC 1 cut(s) 164
AjiI CACGTC 1 cut(s) 217
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 23, 281
BbsI GAAGAC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 216
BccI CCATC 2 cut(s) 179, 202
BcoDI GTCTC 1 cut(s) 151
BfaI CTAG 1 cut(s) 278
BmeRI GACNNNNNGTC 1 cut(s) 164
BmgBI CACGTC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 246
BpiI GAAGAC 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 185
Bsa29I ATCGAT 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 78
Bse1I ACTGG 2 cut(s) 135, 248
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 2 cut(s) 190, 269
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 2 cut(s) 135, 248
BseRI GAGGAG 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 192
BsiHKAI GWGCWC 1 cut(s) 216
BslFI GGGAC 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 189, 255
Bsp19I CCATGG 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 127
BspDI ATCGAT 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 1 cut(s) 197
BsrI ACTGG 2 cut(s) 135, 248
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 189, 255
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 2 cut(s) 75, 294
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 2 cut(s) 190, 269
BstKTI GATC 2 cut(s) 192, 258
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 189, 255
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 78
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 2 cut(s) 190, 269
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 1 cut(s) 33
CviAII CATG 3 cut(s) 56, 79, 89
CviJI RGCY 2 cut(s) 64, 111
CviKI_1 RGCY 2 cut(s) 64, 111
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 191, 257
DpnII GATC 2 cut(s) 189, 255
DriI GACNNNNNGTC 1 cut(s) 164
Eam1105I GACNNNNNGTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 59, 82, 92
FaiI YATR 5 cut(s) 57, 67, 80, 90, 197
FaqI GGGAC 1 cut(s) 203
FatI CATG 3 cut(s) 55, 78, 88
FblI GTMKAC 1 cut(s) 235
FokI GGATG 2 cut(s) 197, 276
FspBI CTAG 1 cut(s) 278
GsuI CTGGAG 1 cut(s) 118
Hin1II CATG 3 cut(s) 59, 82, 92
HinfI GANTC 2 cut(s) 6, 142
HphI GGTGA 2 cut(s) 23, 281
Hpy166II GTNNAC 1 cut(s) 236
Hpy188III TCNNGA 2 cut(s) 149, 278
Hpy8I GTNNAC 1 cut(s) 236
Hpy99I CGWCG 2 cut(s) 22, 155
HpyCH4III ACNGT 2 cut(s) 75, 294
HpyCH4IV ACGT 2 cut(s) 162, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 162, 216
Hsp92II CATG 3 cut(s) 59, 82, 92
Kzo9I GATC 2 cut(s) 189, 255
LmnI GCTCC 2 cut(s) 211, 283
LpnPI CCDG 3 cut(s) 148, 227, 261
MaeI CTAG 1 cut(s) 278
MaeII ACGT 2 cut(s) 162, 216
MaeIII GTNAC 1 cut(s) 25
MalI GATC 2 cut(s) 191, 257
MboI GATC 2 cut(s) 189, 255
MboII GAAGA 2 cut(s) 112, 160
MhlI GDGCHC 1 cut(s) 216
MlyI GAGTC 1 cut(s) 136
MnlI CCTC 1 cut(s) 274
MwoI GCNNNNNNNGC 1 cut(s) 61
NcoI CCATGG 1 cut(s) 78
NdeII GATC 2 cut(s) 189, 255
NlaIII CATG 3 cut(s) 59, 82, 92
NlaIV GGNNCC 1 cut(s) 246
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 6
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 246
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
Sau3AI GATC 2 cut(s) 189, 255
SchI GAGTC 1 cut(s) 136
SduI GDGCHC 1 cut(s) 216
SetI ASST 5 cut(s) 165, 180, 219, 235, 246
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SspMI CTAG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 75, 294
TaiI ACGT 2 cut(s) 165, 219
TaqI TCGA 2 cut(s) 150, 192
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 1 cut(s) 6
TscAI CASTG 1 cut(s) 255
TspDTI ATGAA 2 cut(s) 54, 112
TspRI CASTG 1 cut(s) 255
XbaI TCTAGA 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 235
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.