Rh6BG325700

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0002895
Physical Location & Seq
Reverse (-)
55746772 .. 55752350
5579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG325700.1

Sequence Viewer

Length: 1674 bp
ATGAGCAAGAAAGCGAACCCCAGTGTCTTCTTAGATGTATCCATTGATGGGGCCCCGACGGAAAGAATTGTGATCGAGCTTTTTGCGGATGTTGTGCCTAAGACAGCAGAAAATTTTAGGGCTCTCTGTACAGGTGAGAAGGGCATTGGAAAGTCTACAGGCAAACCTCTTCACTACAAAGGAACGCAATTTCATCGAATTATCAAAGGATTTATGGCGCAAGGTGGTGATTTTTCAAAGGGGAACGGAACTGGCGGAGAAAGTATTTATGGAGGAAAGTTTGCAGATGAAAATTTTAAATTGAAGCATGATAGACCCGGCCTTCTGTCTATGGCAAATGGCGGTCCAAATACAAATGGGTCTCAGTTCTTTATAATTTTCAATCCTACACCACATCTTAACGGGAAACATGTTGTTTTTGGAAAGGTTACAAAGGGAATAGATGTAGTTCAGAAAATTGAGAAAGCTGGAACAGATCAAGGAAACCCTTCGCAACTGGTGAAAATTGTAGACTGTGGTGAAGTTGAGAATAGTAAAATCACCAGTGCAACAGAGAAAGAGAAAGGGAAAAAGAGGAAATCAGTGAAGATTTCATCATCTGAGGATAGTTCTGATGAGGAAGTGAGAGGAAGGCGTAAAAAATCTCTGAAGGAAAAGAGGAAGAAAAGAAAGAGATATTCTTCGTCTGATTCCTCAGACATGTCAGATTCTTATTCTTCAGATTCAGATTCACATTCAGATTCATCCGACTCAAGTTCGCTTAGTGATGAAAGGCGTAGGAAGAGAAAAGCCGTTAAAAGAGATAAGCACTACCGTTCCAGGAAAAGAAGAGATGGAAAAAAAGAGAGGAAGAGAGGCCGACATGCCAAACAATCAAGGCGCAAGTCAAAACGGAGGTCAGAAAGTTCAAGTGATACTGAAAGTGAGAGTACTAGAAGCAGCGCCAGCAGTTCTGATGATGATAAAGATGGTCATCGCGTTTCTTCTCGTAAAAACGGCAATTTAAAGAAGGCAGAAAATAAACTTCCAAGAAATCTTGATGTGGTAAAGCAATCCCCACAAGGAGGGAAAAAATCTATTGAACAGAGGAAGAATCTTGATAGAAAGAAAATTGGGGACAACTCATCCGAGGAAGAAGGTGAATTTTCTCCAAAGAATGGTGTTCATGTAACTAACGGGCATAATGCAGAAGCTAAAACTGCTAATCAACAGTCCTACTCAGATGACTCGAACAAGCCCAGCAGAAGTCCATCACACAGTGCAAGTCCTAAGAGGATTACTGGCAGAAGTCCACCAAGAAATTCTCTCGAGCAAAAGAGAGGAAGGCCTTCTAGGAGTCCATTGGGTAGTCCTGTCCGGAAAGCTCCTGAACCTTCTACTTCAAACCACGAACAGGGTTTGTCAAGAAGCACTTCTCCAAATGGCACTCCCAAGCGCATTAGGAAAGGACGTGGTTTCACTGATCAGTATGCCTTTGCACGTCGCTACCGTACTCCATCTCCAGAGCGTTCACGGGGTAACTCTTATCGTTACGGTGGAAGAGACATTTATAGAAGTAACCGTGATAGGTACTCAAGCTACCGGAATTATTCTGAGCGCTCACAACCTCGACGTTTCCGGAGCCCACCAAGAGGCAGGAGTCCTCCCAGGTTCTCTCTCTCTTCCAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

557

Amino Acids

62.25

Weight (kDa)

10.41

Isoelectric Point (pI)

66.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 11 - 173 8.3e-50 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 1157
AccI GTMKAC 2 cut(s) 155, 510
AccII CGCG 1 cut(s) 978
AccIII TCCGGA 2 cut(s) 1356, 1617
AciI CCGC 3 cut(s) 86, 255, 342
AcsI RAATTY 4 cut(s) 112, 292, 1142, 1300
AcuI CTGAAG 2 cut(s) 668, 702
AdeI CACNNNGTG 1 cut(s) 1259
AfaI GTAC 4 cut(s) 130, 931, 1492, 1571
AfeI AGCGCT 1 cut(s) 1598
AfiI CCNNNNNNNGG 5 cut(s) 48, 1064, 1157, 1393, 1631
AflIII ACRYGT 2 cut(s) 409, 699
AgsI TTSAA 6 cut(s) 237, 304, 382, 909, 1082, 1383
AjiI CACGTC 2 cut(s) 1451, 1481
AjnI CCWGG 2 cut(s) 818, 1646
AluBI AGCT 5 cut(s) 79, 467, 1193, 1364, 1578
AluI AGCT 5 cut(s) 79, 467, 1193, 1364, 1578
Alw26I GTCTC 2 cut(s) 366, 1536
Ama87I CYCGRG 1 cut(s) 1307
Aor13HI TCCGGA 2 cut(s) 1356, 1617
Aor51HI AGCGCT 1 cut(s) 1598
AoxI GGCC 4 cut(s) 51, 319, 856, 1325
ApaI GGGCCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 939
ApoI RAATTY 4 cut(s) 112, 292, 1142, 1300
ArsI GACNNNNNNTTYG 2 cut(s) 881, 913
Asp700I GAANNNNTTC 3 cut(s) 487, 1327, 1411
AspLEI GCGC 5 cut(s) 220, 882, 944, 1437, 1599
AspS9I GGNCC 3 cut(s) 51, 52, 344
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 6 cut(s) 146, 239, 511, 530, 532, 1151
AvaI CYCGRG 1 cut(s) 1307
AvaII GGWCC 1 cut(s) 344
BaeGI GKGCMC 1 cut(s) 55
BanII GRGCYC 3 cut(s) 55, 124, 1625
BbsI GAAGAC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 951
BccI CCATC 5 cut(s) 41, 827, 962, 1258, 1504
BceAI ACGGC 2 cut(s) 776, 1012
BcgI CGANNNNNNTGC 4 cut(s) 65, 99, 176, 210
BciT130I CCWGG 2 cut(s) 820, 1648
BciVI GTATCC 1 cut(s) 49
BclI TGATCA 1 cut(s) 1462
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 2 cut(s) 366, 1536
BfaI CTAG 2 cut(s) 933, 1332
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 2 cut(s) 945, 1600
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 1 cut(s) 940
BlsI GCNGC 1 cut(s) 941
BmcAI AGTACT 1 cut(s) 931
Bme1390I CCNGG 3 cut(s) 318, 820, 1648
Bme18I GGWCC 1 cut(s) 344
BmeT110I CYCGRG 1 cut(s) 1307
BmgBI CACGTC 2 cut(s) 1451, 1481
BmgT120I GGNCC 3 cut(s) 51, 52, 344
BmiI GGNNCC 4 cut(s) 52, 53, 54, 1622
BmrFI CCNGG 3 cut(s) 318, 820, 1648
BmrI ACTGGG 1 cut(s) 15
BmuI ACTGGG 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 1485
BpuEI CTTGAG 2 cut(s) 736, 1558
BpuMI CCSGG 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 972
BsaI GGTCTC 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 1128, 1646
BsaWI WCCGGW 3 cut(s) 1356, 1581, 1617
BsaXI ACNNNNNCTCC 2 cut(s) 1483, 1513
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 1064, 1157, 1393, 1631
Bse1I ACTGG 5 cut(s) 21, 256, 501, 543, 1285
Bse8I GATNNNNATC 1 cut(s) 972
BseAI TCCGGA 2 cut(s) 1356, 1617
BseBI CCWGG 2 cut(s) 820, 1648
BseDI CCNNGG 2 cut(s) 1128, 1646
BseGI GGATG 3 cut(s) 94, 743, 1124
BseJI GATNNNNATC 1 cut(s) 972
BseLI CCNNNNNNNGG 5 cut(s) 48, 1064, 1157, 1393, 1631
BseMII CTCAG 5 cut(s) 377, 591, 708, 1233, 1584
BseNI ACTGG 5 cut(s) 21, 256, 501, 543, 1285
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 1 cut(s) 951
BseYI CCCAGC 1 cut(s) 1238
Bsh1236I CGCG 1 cut(s) 978
BshFI GGCC 4 cut(s) 53, 321, 858, 1327
BsiHKCI CYCGRG 1 cut(s) 1307
BsiSI CCGG 4 cut(s) 318, 1357, 1582, 1618
BslFI GGGAC 1 cut(s) 1130
BslI CCNNNNNNNGG 5 cut(s) 48, 1064, 1157, 1393, 1631
BsmAI GTCTC 2 cut(s) 366, 1536
BsmFI GGGAC 1 cut(s) 1130
BsnI GGCC 4 cut(s) 53, 321, 858, 1327
Bso31I GGTCTC 1 cut(s) 366
BsoBI CYCGRG 1 cut(s) 1307
Bsp120I GGGCCC 1 cut(s) 51
Bsp1286I GDGCHC 3 cut(s) 55, 124, 1625
Bsp13I TCCGGA 2 cut(s) 1356, 1617
Bsp1407I TGTACA 1 cut(s) 128
Bsp143I GATC 3 cut(s) 72, 475, 1462
BspACI CCGC 3 cut(s) 86, 255, 342
BspANI GGCC 4 cut(s) 53, 321, 858, 1327
BspCNI CTCAG 5 cut(s) 376, 592, 707, 1232, 1585
BspEI TCCGGA 2 cut(s) 1356, 1617
BspFNI CGCG 1 cut(s) 978
BspLI GGNNCC 4 cut(s) 52, 53, 54, 1622
BspTNI GGTCTC 1 cut(s) 366
BsrGI TGTACA 1 cut(s) 128
BsrI ACTGG 5 cut(s) 21, 256, 501, 543, 1285
BssECI CCNNGG 2 cut(s) 1128, 1646
BssMI GATC 3 cut(s) 72, 475, 1462
Bst2UI CCWGG 2 cut(s) 820, 1648
Bst4CI ACNGT 7 cut(s) 515, 815, 1212, 1259, 1490, 1535, 1562
Bst6I CTCTTC 6 cut(s) 174, 776, 823, 845, 1534, 1666
BstAUI TGTACA 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 946
BstDEI CTNAG 9 cut(s) 31, 99, 363, 600, 694, 761, 1219, 1269, 1593
BstF5I GGATG 3 cut(s) 94, 743, 1124
BstFNI CGCG 1 cut(s) 978
BstH2I RGCGCY 2 cut(s) 945, 1600
BstHHI GCGC 5 cut(s) 220, 882, 944, 1437, 1599
BstKTI GATC 3 cut(s) 75, 478, 1465
BstMAI GTCTC 2 cut(s) 366, 1536
BstMBI GATC 3 cut(s) 72, 475, 1462
BstMWI GCNNNNNNNGC 2 cut(s) 945, 1199
BstNI CCWGG 2 cut(s) 820, 1648
BstNSI RCATGY 3 cut(s) 413, 703, 866
BstSCI CCNGG 3 cut(s) 316, 818, 1646
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 55
BstUI CGCG 1 cut(s) 978
BstV1I GCAGC 1 cut(s) 951
BstV2I GAAGAC 1 cut(s) 19
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 4 cut(s) 53, 321, 858, 1327
BtgZI GCGATG 1 cut(s) 959
BtrI CACGTC 2 cut(s) 1451, 1481
BtsCI GGATG 3 cut(s) 94, 743, 1124
BtsIMutI CAGTG 5 cut(s) 28, 550, 588, 1264, 1458
Cac8I GCNNGC 1 cut(s) 946
CfoI GCGC 5 cut(s) 220, 882, 944, 1437, 1599
Cfr13I GGNCC 3 cut(s) 51, 52, 344
Csp6I GTAC 4 cut(s) 129, 930, 1491, 1570
CviAII CATG 5 cut(s) 308, 410, 700, 863, 1166
CviQI GTAC 4 cut(s) 129, 930, 1491, 1570
DdeI CTNAG 9 cut(s) 31, 99, 363, 600, 694, 761, 1219, 1269, 1593
DpnI GATC 3 cut(s) 74, 477, 1464
DpnII GATC 3 cut(s) 72, 475, 1462
DraI TTTAAA 2 cut(s) 298, 1005
DraIII CACNNNGTG 1 cut(s) 1259
Eam1104I CTCTTC 6 cut(s) 174, 776, 823, 845, 1534, 1666
EarI CTCTTC 6 cut(s) 174, 776, 823, 845, 1534, 1666
EciI GGCGGA 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 1327
Eco24I GRGCYC 3 cut(s) 55, 124, 1625
Eco31I GGTCTC 1 cut(s) 366
Eco47I GGWCC 1 cut(s) 344
Eco47III AGCGCT 1 cut(s) 1598
Eco57I CTGAAG 2 cut(s) 668, 702
Eco88I CYCGRG 1 cut(s) 1307
EcoO109I RGGNCCY 2 cut(s) 51, 52
EcoRII CCWGG 2 cut(s) 818, 1646
EcoT38I GRGCYC 3 cut(s) 55, 124, 1625
FaeI CATG 5 cut(s) 311, 413, 703, 866, 1169
FalI AAGNNNNNCTT 2 cut(s) 1396, 1428
FaqI GGGAC 1 cut(s) 1130
FatI CATG 5 cut(s) 307, 409, 699, 862, 1165
FbaI TGATCA 1 cut(s) 1462
FblI GTMKAC 2 cut(s) 155, 510
Fnu4HI GCNGC 1 cut(s) 940
FokI GGATG 3 cut(s) 101, 730, 1111
FriOI GRGCYC 3 cut(s) 55, 124, 1625
Fsp4HI GCNGC 1 cut(s) 940
FspBI CTAG 2 cut(s) 933, 1332
GlaI GCGC 5 cut(s) 219, 881, 943, 1436, 1598
GluI GCNGC 1 cut(s) 940
GsaI CCCAGC 1 cut(s) 1242
GsuI CTGGAG 1 cut(s) 1485
HaeII RGCGCY 2 cut(s) 945, 1600
HaeIII GGCC 4 cut(s) 53, 321, 858, 1327
HapII CCGG 4 cut(s) 318, 1357, 1582, 1618
HhaI GCGC 5 cut(s) 220, 882, 944, 1437, 1599
Hin1II CATG 5 cut(s) 311, 413, 703, 866, 1169
Hin6I GCGC 5 cut(s) 218, 880, 942, 1435, 1597
HinP1I GCGC 5 cut(s) 218, 880, 942, 1435, 1597
HpaII CCGG 4 cut(s) 318, 1357, 1582, 1618
HphI GGTGA 6 cut(s) 146, 239, 511, 530, 532, 1151
Hpy166II GTNNAC 4 cut(s) 156, 511, 1292, 1511
Hpy188III TCNNGA 8 cut(s) 1037, 1097, 1307, 1357, 1367, 1404, 1502, 1618
Hpy8I GTNNAC 4 cut(s) 156, 511, 1292, 1511
Hpy99I CGWCG 3 cut(s) 61, 1485, 1614
HpyCH4III ACNGT 7 cut(s) 515, 815, 1212, 1259, 1490, 1535, 1562
HpyCH4IV ACGT 3 cut(s) 1450, 1480, 1612
HpyCH4V TGCA 5 cut(s) 284, 548, 1187, 1262, 1478
HpyF10VI GCNNNNNNNGC 2 cut(s) 945, 1199
HpyF3I CTNAG 9 cut(s) 31, 99, 363, 600, 694, 761, 1219, 1269, 1593
HpySE526I ACGT 3 cut(s) 1450, 1480, 1612
Hsp92II CATG 5 cut(s) 311, 413, 703, 866, 1169
HspAI GCGC 5 cut(s) 218, 880, 942, 1435, 1597
Kpn2I TCCGGA 2 cut(s) 1356, 1617
Ksp22I TGATCA 1 cut(s) 1462
Kzo9I GATC 3 cut(s) 72, 475, 1462
LmnI GCTCC 2 cut(s) 1369, 1620
Lsp1109I GCAGC 1 cut(s) 951
MaeI CTAG 2 cut(s) 933, 1332
MaeII ACGT 3 cut(s) 1450, 1480, 1612
MaeIII GTNAC 5 cut(s) 427, 1168, 1517, 1529, 1556
MalI GATC 3 cut(s) 74, 477, 1464
MboI GATC 3 cut(s) 72, 475, 1462
MhlI GDGCHC 3 cut(s) 55, 124, 1625
MlyI GAGTC 4 cut(s) 743, 1220, 1345, 1648
MmeI TCCRAC 1 cut(s) 771
MroI TCCGGA 2 cut(s) 1356, 1617
MroXI GAANNNNTTC 3 cut(s) 487, 1327, 1411
MseI TTAA 4 cut(s) 297, 399, 795, 1004
MspI CCGG 4 cut(s) 318, 1357, 1582, 1618
MspR9I CCNGG 3 cut(s) 318, 820, 1648
MvaI CCWGG 2 cut(s) 820, 1648
MvnI CGCG 1 cut(s) 978
MwoI GCNNNNNNNGC 2 cut(s) 945, 1199
NciI CCSGG 1 cut(s) 318
NdeII GATC 3 cut(s) 72, 475, 1462
NlaIII CATG 5 cut(s) 311, 413, 703, 866, 1169
NlaIV GGNNCC 4 cut(s) 52, 53, 54, 1622
NspI RCATGY 3 cut(s) 413, 703, 866
PaeR7I CTCGAG 1 cut(s) 1307
PceI AGGCCT 1 cut(s) 1327
PciI ACATGT 2 cut(s) 409, 699
PcsI WCGNNNNNNNCGW 1 cut(s) 1486
PdmI GAANNNNTTC 3 cut(s) 487, 1327, 1411
PfeI GAWTC 6 cut(s) 689, 707, 722, 728, 740, 1093
PflMI CCANNNNNTGG 1 cut(s) 1157
PfoI TCCNGGA 1 cut(s) 818
PkrI GCNGC 1 cut(s) 941
PleI GAGTC 4 cut(s) 743, 1220, 1344, 1647
PpsI GAGTC 4 cut(s) 743, 1220, 1344, 1647
PscI ACATGT 2 cut(s) 409, 699
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 2 cut(s) 818, 1646
PspFI CCCAGC 1 cut(s) 1238
PspGI CCWGG 2 cut(s) 818, 1646
PspN4I GGNNCC 4 cut(s) 52, 53, 54, 1622
PspOMI GGGCCC 1 cut(s) 51
PspPI GGNCC 3 cut(s) 51, 52, 344
RsaI GTAC 4 cut(s) 130, 931, 1492, 1571
RsaNI GTAC 4 cut(s) 129, 930, 1491, 1570
SaqAI TTAA 4 cut(s) 297, 399, 795, 1004
SatI GCNGC 1 cut(s) 940
Sau3AI GATC 3 cut(s) 72, 475, 1462
Sau96I GGNCC 3 cut(s) 51, 52, 344
ScaI AGTACT 1 cut(s) 931
SchI GAGTC 4 cut(s) 743, 1220, 1345, 1648
ScrFI CCNGG 3 cut(s) 318, 820, 1648
SduI GDGCHC 3 cut(s) 55, 124, 1625
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 1307
SinI GGWCC 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 1307
SmlI CTYRAG 3 cut(s) 751, 1307, 1573
SmoI CTYRAG 3 cut(s) 751, 1307, 1573
SseBI AGGCCT 1 cut(s) 1327
SsiI CCGC 3 cut(s) 86, 255, 342
SspMI CTAG 2 cut(s) 933, 1332
StuI AGGCCT 1 cut(s) 1327
StyD4I CCNGG 3 cut(s) 316, 818, 1646
TaaI ACNGT 7 cut(s) 515, 815, 1212, 1259, 1490, 1535, 1562
TaiI ACGT 3 cut(s) 1453, 1483, 1615
TaqI TCGA 5 cut(s) 75, 196, 1229, 1308, 1609
TatI WGTACW 2 cut(s) 128, 929
TfiI GAWTC 6 cut(s) 689, 707, 722, 728, 740, 1093
Tru1I TTAA 4 cut(s) 297, 399, 795, 1004
Tru9I TTAA 4 cut(s) 297, 399, 795, 1004
TscAI CASTG 5 cut(s) 28, 550, 588, 1264, 1465
TseI GCWGC 1 cut(s) 939
TspDTI ATGAA 6 cut(s) 182, 303, 582, 732, 783, 1154
TspGWI ACGGA 3 cut(s) 74, 261, 907
TspRI CASTG 5 cut(s) 28, 550, 588, 1264, 1465
Van91I CCANNNNNTGG 1 cut(s) 1157
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 4 cut(s) 112, 292, 1142, 1300
XceI RCATGY 3 cut(s) 413, 703, 866
XhoI CTCGAG 1 cut(s) 1307
XmiI GTMKAC 2 cut(s) 155, 510
XmnI GAANNNNTTC 3 cut(s) 487, 1327, 1411
XspI CTAG 2 cut(s) 933, 1332
ZrmI AGTACT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.