FvH4_7g21680

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002895
Physical Location & Seq
Forward (+)
17269399 .. 17270847
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21680.t1

Sequence Viewer

Length: 732 bp
ATGGTTGGGGTGGTCGTCGTTTTGGTCACCACCATGGCTAATAAAAACAAGAAAATCGCCATCACAACCAAGCCAGGCAGCTTAATCGAAAAAAAAGAAACCAAGCCAGACAGCACCTCTATCTTTGAAAATAAGCCAGACAGCACCTCAAATAAGGATGTGAAAGAGATAAGGAACAAAAAAAAGAAAATTATTGACAAGAAGAAACCTCGAGTCTATTTGGAGATAGAAATTGATGGAATCAACAAGGGACGAATTATAATTGAGCTATTTGATGATCGGCTGCCGAACACAGCTGAAAATTTTAGGAATCTCTGTAAAGGATTTAATACCGGAAGTCCTGGACAAGTCCTCCATTATACGGGATCAAAATTTCATCTCATAGATAAAGGACTTGCAGCCCAAGCACATGCATGTGGAGAGTATGCTTCTCCATCCGGATATAGATTTGTTAAAGTTACTGATGCAAACATAGGGAAGCATGATGAACCCTACTTAGTGTCAATGGCAAACTATGGCGAGGAATTGACAATTGGTTCTCAATTCTTTATCACATTTTCCAGTTTACCTCATGTCGACGGGAAACACGTTGTTGTTGGCAAGGTTGTGGAAGGATTTAATGTACTCCATGAAATGGAGGGCGTTAAAACTACTTTAGGAAAACCAAAAGTACCCGTAGTCATTGTAGATTGTGGAGAAATTGTGCAAGAGACAGATGCTGGCAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

244

Amino Acids

26.77

Weight (kDa)

8.77

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 74 - 232 2e-32 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccB7I CCANNNNNTGG 1 cut(s) 634
AccI GTMKAC 1 cut(s) 576
AccIII TCCGGA 1 cut(s) 437
AclWI GGATC 1 cut(s) 373
AcsI RAATTY 2 cut(s) 301, 371
AfaI GTAC 2 cut(s) 624, 672
AfiI CCNNNNNNNGG 2 cut(s) 361, 634
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 1 cut(s) 128
AjnI CCWGG 2 cut(s) 73, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 516, 548
AluBI AGCT 3 cut(s) 81, 268, 296
AluI AGCT 3 cut(s) 81, 268, 296
Alw26I GTCTC 1 cut(s) 704
AlwI GGATC 1 cut(s) 373
AlwNI CAGNNNCTG 1 cut(s) 719
Ama87I CYCGRG 1 cut(s) 210
Aor13HI TCCGGA 1 cut(s) 437
ApeKI GCWGC 3 cut(s) 78, 283, 398
ApoI RAATTY 2 cut(s) 301, 371
AsuHPI GGTGA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 210
BbvI GCAGC 3 cut(s) 90, 270, 410
BccI CCATC 3 cut(s) 68, 230, 442
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BciT130I CCWGG 2 cut(s) 75, 342
BcoDI GTCTC 1 cut(s) 704
BisI GCNGC 3 cut(s) 79, 284, 399
BlsI GCNGC 3 cut(s) 80, 285, 400
Bme1390I CCNGG 2 cut(s) 75, 342
BmeT110I CYCGRG 1 cut(s) 210
BmrFI CCNGG 2 cut(s) 75, 342
BmsI GCATC 2 cut(s) 454, 706
BsaJI CCNNGG 1 cut(s) 33
BsaWI WCCGGW 2 cut(s) 332, 437
BsaXI ACNNNNNCTCC 4 cut(s) 336, 366, 687, 717
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 634
Bse1I ACTGG 1 cut(s) 561
BseAI TCCGGA 1 cut(s) 437
BseBI CCWGG 2 cut(s) 75, 342
BseDI CCNNGG 1 cut(s) 33
BseGI GGATG 2 cut(s) 163, 434
BseLI CCNNNNNNNGG 2 cut(s) 361, 634
BseNI ACTGG 1 cut(s) 561
BseXI GCAGC 3 cut(s) 90, 270, 410
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 2 cut(s) 333, 438
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 361, 634
BsmAI GTCTC 1 cut(s) 704
BsmFI GGGAC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 437
Bsp143I GATC 2 cut(s) 277, 365
Bsp19I CCATGG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 437
BspPI GGATC 1 cut(s) 373
BsrI ACTGG 1 cut(s) 561
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 2 cut(s) 277, 365
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 75, 342
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 1 cut(s) 496
BstDSI CCRYGG 1 cut(s) 33
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 2 cut(s) 163, 434
BstKTI GATC 2 cut(s) 280, 368
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 2 cut(s) 277, 365
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 2 cut(s) 75, 342
BstNSI RCATGY 2 cut(s) 413, 417
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 2 cut(s) 73, 340
BstV1I GCAGC 3 cut(s) 90, 270, 410
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 163, 434
Cac8I GCNNGC 1 cut(s) 721
CaiI CAGNNNCTG 1 cut(s) 719
Csp6I GTAC 2 cut(s) 623, 671
CviAII CATG 6 cut(s) 34, 410, 414, 482, 572, 629
CviJI RGCY 9 cut(s) 38, 73, 81, 106, 136, 268, 283, 296, 401
CviKI_1 RGCY 9 cut(s) 38, 73, 81, 106, 136, 268, 283, 296, 401
CviQI GTAC 2 cut(s) 623, 671
DdeI CTNAG 1 cut(s) 496
DpnI GATC 2 cut(s) 279, 367
DpnII GATC 2 cut(s) 277, 365
Eco130I CCWWGG 1 cut(s) 33
Eco88I CYCGRG 1 cut(s) 210
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 73, 340
EcoT14I CCWWGG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 6 cut(s) 37, 413, 417, 485, 575, 632
FaqI GGGAC 1 cut(s) 264
FatI CATG 6 cut(s) 33, 409, 413, 481, 571, 628
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 3 cut(s) 79, 284, 399
FokI GGATG 2 cut(s) 170, 421
Fsp4HI GCNGC 3 cut(s) 79, 284, 399
GluI GCNGC 3 cut(s) 79, 284, 399
HapII CCGG 2 cut(s) 333, 438
Hin1II CATG 6 cut(s) 37, 413, 417, 485, 575, 632
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 3 cut(s) 213, 240, 310
HpaII CCGG 2 cut(s) 333, 438
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 566, 577
Hpy188III TCNNGA 1 cut(s) 438
Hpy8I GTNNAC 2 cut(s) 566, 577
Hpy99I CGWCG 2 cut(s) 20, 581
HpyAV CCTTC 1 cut(s) 605
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 4 cut(s) 398, 413, 467, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 1 cut(s) 496
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 6 cut(s) 37, 413, 417, 485, 575, 632
Kpn2I TCCGGA 1 cut(s) 437
Kzo9I GATC 2 cut(s) 277, 365
Lsp1109I GCAGC 3 cut(s) 90, 270, 410
LweI GCATC 2 cut(s) 454, 706
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 2 cut(s) 25, 457
MalI GATC 2 cut(s) 279, 367
MboI GATC 2 cut(s) 277, 365
MboII GAAGA 1 cut(s) 214
MfeI CAATTG 1 cut(s) 531
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 7 cut(s) 127, 157, 219, 362, 514, 579, 631
Mph1103I ATGCAT 1 cut(s) 415
MroI TCCGGA 1 cut(s) 437
MseI TTAA 5 cut(s) 83, 327, 453, 618, 645
MslI CAYNNNNRTG 3 cut(s) 32, 412, 414
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 2 cut(s) 333, 438
MspR9I CCNGG 2 cut(s) 75, 342
MunI CAATTG 1 cut(s) 531
MvaI CCWGG 2 cut(s) 75, 342
MwoI GCNNNNNNNGC 1 cut(s) 404
NcoI CCATGG 1 cut(s) 33
NdeII GATC 2 cut(s) 277, 365
NlaIII CATG 6 cut(s) 37, 413, 417, 485, 575, 632
NmuCI GTSAC 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 2 cut(s) 413, 417
PaeR7I CTCGAG 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PfeI GAWTC 2 cut(s) 240, 310
PflMI CCANNNNNTGG 1 cut(s) 634
PfoI TCCNGGA 1 cut(s) 340
PkrI GCNGC 3 cut(s) 80, 285, 400
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PsiI TTATAA 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 73, 340
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 2 cut(s) 73, 340
PspXI VCTCGAGB 1 cut(s) 210
PstNI CAGNNNCTG 1 cut(s) 719
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 624, 672
RsaNI GTAC 2 cut(s) 623, 671
RseI CAYNNNNRTG 3 cut(s) 32, 412, 414
SalI GTCGAC 1 cut(s) 575
SaqAI TTAA 5 cut(s) 83, 327, 453, 618, 645
SatI GCNGC 3 cut(s) 79, 284, 399
Sau3AI GATC 2 cut(s) 277, 365
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 2 cut(s) 75, 342
SetI ASST 9 cut(s) 83, 119, 149, 211, 270, 298, 571, 591, 606
SfaNI GCATC 2 cut(s) 454, 706
Sfr274I CTCGAG 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 210
SmiMI CAYNNNNRTG 3 cut(s) 32, 412, 414
SmlI CTYRAG 1 cut(s) 210
SmoI CTYRAG 1 cut(s) 210
StyD4I CCNGG 2 cut(s) 73, 340
StyI CCWWGG 1 cut(s) 33
TaiI ACGT 1 cut(s) 591
TaqI TCGA 3 cut(s) 87, 211, 576
TatI WGTACW 1 cut(s) 622
TfiI GAWTC 2 cut(s) 240, 310
Tru1I TTAA 5 cut(s) 83, 327, 453, 618, 645
Tru9I TTAA 5 cut(s) 83, 327, 453, 618, 645
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 3 cut(s) 78, 283, 398
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 3 cut(s) 365, 501, 645
Van91I CCANNNNNTGG 1 cut(s) 634
XapI RAATTY 2 cut(s) 301, 371
XceI RCATGY 2 cut(s) 413, 417
XhoI CTCGAG 1 cut(s) 210
XmiI GTMKAC 1 cut(s) 576
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.