Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002895

Physical Location & Seq

Genomic Coordinates Reverse (-)

33038283 .. 33039473

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTGGCACTTTACAACGAATGGCAGCTTTAGTGTAAAGACAGGGTACTGGGTGGCCCGGGGTTTGCAAGCTAAGAATGGTAATAGTGCGGCTGGGTGCAGTTCTTCTACTCTCCCAGATATATGGAAAAAGGTATGGAGGCTATTTGTCCCACACAAGATTAAATTATTACTTTGGAGGGCCATTCAAAATTTTCTGCCCTGTGGCCATAATCTACAACAAAGAAGAATTACACCAGATGCAAGTTGCTGGCAATGCGGTGCTCCTTGTGAAACTCCTATTCATGTATTTTGGGATTGTCCTATGGCTAGAAGAGTTTGGAATCTGACCTTCTTGAGTGAAGTTTGTAATACGTGGAAGGAGCCCTCCTTCTTGGATTTAATTTCACATGTGCAAAAGGTTGCTGTAAGGAGTGACATGGAGTTCTTTGGCTTTATGGTGTGGTGGCTCTGGAGAAATAGAAATCTGCATAGGCATGGGGAAAAGACGTTGAGATCAGAGGACTTAGTGCTAGCTGCTGGGGAGTGGCAGATGCAGTACTGCAATGCCAATATCAAGAATTCGGATCCTGTTTTGCCTGAGTCGATGGTGCAGAGGGAGACTGCCAAATGGGAACCTCCAGGTATGGGATGTCTCAAATTAAATTTTGACGGCGCTACGAATGTTAGAAATGGAGTAAGTGGAATTGGAGCTGTTTTCCGGGATCAAATGGGTAAGCTTAAAGGCGCCTTGGCAGTTCCTCAGGTCGGTAACCTTCCCCCAAGAGCAGTGGAGTCTTTAGCGATGCTTCATGGTTTAAGGTTTGCTCTGCATGTTGGGTTTAATAAATTGGAAGTGGAGGGAGATGCTTTGACAATTTTCAATGCTTTAAATGATAGTAGTGAGGATCTAAGTTCTGAAGGTCATATTTTAGATGAAGTTAGACAGTTACTTAAGTCTTTTGCTAGTTGTAGTTGGCGATTTGTAAGGCGAGATTGTAACAAGGTTGCACATCGCCTTGCTAAAGAAGCCTTGAAGTTGAGTCAACCTTTATTATGTTTGGAGTCAGGGCCTAGTTGGCTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

355

Amino Acids

40.24

Weight (kDa)

9.01

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	11 - 107	6.3e-16	zinc-binding in reverse transcriptase
RVT_3	PF13456	215 - 337	2.4e-29	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34870
fragaria_vesca	FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_6g42250 FvH4_7g21680 FvH4_7g21700
malus_domestica	MD03G1257000.v1.1 MD11G1277600.v1.1
prunus_persica	Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1
pyrus_communis	pycom03g20370 pycom11g24550
rosa_chinensis	RchiOBHm_Chr6g0289781
rosa_laevigata	RLG00000012267 RLG00000027155
rosa_multiflora	Rmu_sc0005640.1_g000007
rosa_roxburghii	Rroxscaffold_1G00032710 Rroxscaffold_7G00177550 Rroxscaffold_7G00178070
rosa_rugosa	Rorug06G0206700 Rorug06G0206800 Rorug06G0206900 Rorug06G0207000
rosa_samantha	Rh1BG318900 Rh1CG332900 Rh1DG349500 Rh6AG318400 Rh6BG325700 Rh6CG331600 Rh6DG317000
rosa_wichuraiana	Rw6G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	725
AciI	CCGC	2 cut(s)	89, 258
AclWI	GGATC	4 cut(s)	560, 573, 711, 894
AcoI	YGGCCR	1 cut(s)	205
AcsI	RAATTY	3 cut(s)	190, 559, 643
AcuI	CTGAAG	1 cut(s)	918
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	2 cut(s)	47, 539
AfiI	CCNNNNNNNGG	2 cut(s)	626, 746
AflII	CTTAAG	1 cut(s)	932
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	3 cut(s)	188, 862, 1015
AjnI	CCWGG	1 cut(s)	619
AluBI	AGCT	5 cut(s)	27, 71, 515, 692, 718
AluI	AGCT	5 cut(s)	27, 71, 515, 692, 718
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	2 cut(s)	593, 638
AlwI	GGATC	4 cut(s)	560, 573, 711, 894
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	4 cut(s)	54, 180, 205, 1049
ApeKI	GCWGC	2 cut(s)	24, 515
ApoI	RAATTY	3 cut(s)	190, 559, 643
AspLEI	GCGC	2 cut(s)	656, 728
AspS9I	GGNCC	3 cut(s)	55, 180, 1049
AsuC2I	CCSGG	3 cut(s)	58, 59, 701
AsuNHI	GCTAGC	1 cut(s)	511
AvaI	CYCGRG	1 cut(s)	57
AxyI	CCTNAGG	1 cut(s)	741
BalI	TGGCCA	1 cut(s)	207
BamHI	GGATCC	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	725
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	2 cut(s)	36, 502
BccI	CCATC	1 cut(s)	580
BceAI	ACGGC	1 cut(s)	667
BciT130I	CCWGG	1 cut(s)	621
BcnI	CCSGG	3 cut(s)	58, 59, 701
BcoDI	GTCTC	2 cut(s)	593, 638
BfaI	CTAG	5 cut(s)	309, 512, 945, 1053, 1066
BfoI	RGCGCY	2 cut(s)	657, 729
BfrI	CTTAAG	1 cut(s)	932
BglI	GCCNNNNNGGC	1 cut(s)	1057
BisI	GCNGC	3 cut(s)	25, 90, 516
BlsI	GCNGC	3 cut(s)	26, 91, 517
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	4 cut(s)	58, 59, 621, 701
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	55, 180, 1049
BmiI	GGNNCC	4 cut(s)	363, 567, 615, 727
BmrFI	CCNGG	4 cut(s)	58, 59, 621, 701
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	4 cut(s)	229, 522, 774, 835
BmtI	GCTAGC	1 cut(s)	515
BmuI	ACTGGG	1 cut(s)	58
BpmI	CTGGAG	2 cut(s)	472, 603
BpuEI	CTTGAG	1 cut(s)	355
BpuMI	CCSGG	3 cut(s)	58, 59, 701
BsaAI	YACGTR	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	726
BsaJI	CCNNGG	3 cut(s)	57, 58, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	626, 746
Bse1I	ACTGG	1 cut(s)	53
Bse21I	CCTNAGG	1 cut(s)	741
Bse3DI	GCAATG	2 cut(s)	260, 550
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	3 cut(s)	57, 58, 729
BseGI	GGATG	1 cut(s)	635
BseLI	CCNNNNNNNGG	2 cut(s)	626, 746
BseMI	GCAATG	2 cut(s)	260, 550
BseMII	CTCAG	2 cut(s)	570, 755
BseNI	ACTGG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	36, 502
BseYI	CCCAGC	2 cut(s)	92, 518
BsgI	GTGCAG	2 cut(s)	118, 611
BshFI	GGCC	4 cut(s)	56, 182, 207, 1051
BshNI	GGYRCC	1 cut(s)	725
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	58, 700
BslFI	GGGAC	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	626, 746
BsmAI	GTCTC	2 cut(s)	593, 638
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	4 cut(s)	56, 182, 207, 1051
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	265, 366
Bsp143I	GATC	4 cut(s)	494, 565, 703, 886
BspACI	CCGC	2 cut(s)	89, 258
BspANI	GGCC	4 cut(s)	56, 182, 207, 1051
BspCNI	CTCAG	2 cut(s)	571, 754
BspLI	GGNNCC	4 cut(s)	363, 567, 615, 727
BspOI	GCTAGC	1 cut(s)	515
BspPI	GGATC	4 cut(s)	560, 573, 711, 894
BspT107I	GGYRCC	1 cut(s)	725
BspTI	CTTAAG	1 cut(s)	932
BsrDI	GCAATG	2 cut(s)	260, 550
BsrI	ACTGG	1 cut(s)	53
BssECI	CCNNGG	3 cut(s)	57, 58, 729
BssMI	GATC	4 cut(s)	494, 565, 703, 886
BssNI	GRCGYC	1 cut(s)	726
BssT1I	CCWWGG	1 cut(s)	729
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	1 cut(s)	927
Bst6I	CTCTTC	1 cut(s)	307
BstACI	GRCGYC	1 cut(s)	726
BstAFI	CTTAAG	1 cut(s)	932
BstBAI	YACGTR	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	69, 251, 513
BstDEI	CTNAG	5 cut(s)	72, 505, 579, 741, 890
BstEII	GGTNACC	1 cut(s)	749
BstF5I	GGATG	1 cut(s)	635
BstH2I	RGCGCY	2 cut(s)	657, 729
BstHHI	GCGC	2 cut(s)	656, 728
BstKTI	GATC	4 cut(s)	497, 568, 706, 889
BstMAI	GTCTC	2 cut(s)	593, 638
BstMBI	GATC	4 cut(s)	494, 565, 703, 886
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 1007, 1057
BstNI	CCWGG	1 cut(s)	621
BstNSI	RCATGY	2 cut(s)	392, 815
BstPI	GGTNACC	1 cut(s)	749
BstSCI	CCNGG	4 cut(s)	56, 57, 619, 699
BstV1I	GCAGC	2 cut(s)	36, 502
BstX2I	RGATCY	2 cut(s)	565, 886
BstXI	CCANNNNNNTGG	1 cut(s)	123
BstYI	RGATCY	2 cut(s)	565, 886
Bsu36I	CCTNAGG	1 cut(s)	741
BsuRI	GGCC	4 cut(s)	56, 182, 207, 1051
BtgZI	GCGATG	2 cut(s)	797, 977
BtsCI	GGATG	1 cut(s)	635
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	1 cut(s)	774
Cac8I	GCNNGC	3 cut(s)	69, 251, 513
CfoI	GCGC	2 cut(s)	656, 728
Cfr13I	GGNCC	3 cut(s)	55, 180, 1049
Cfr9I	CCCGGG	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	46, 538
CspCI	CAANNNNNGTGG	2 cut(s)	750, 785
CviAII	CATG	6 cut(s)	284, 389, 418, 476, 791, 812
CviQI	GTAC	2 cut(s)	46, 538
DdeI	CTNAG	5 cut(s)	72, 505, 579, 741, 890
DinI	GGCGCC	1 cut(s)	727
DpnI	GATC	4 cut(s)	496, 567, 705, 888
DpnII	GATC	4 cut(s)	494, 565, 703, 886
DraI	TTTAAA	1 cut(s)	870
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	918
Eco81I	CCTNAGG	1 cut(s)	741
Eco88I	CYCGRG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	749
EcoO109I	RGGNCCY	1 cut(s)	1049
EcoO65I	GGTNACC	1 cut(s)	749
EcoRI	GAATTC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	619
EcoT14I	CCWWGG	1 cut(s)	729
EcoT38I	GRGCYC	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	727
EheI	GGCGCC	1 cut(s)	727
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	6 cut(s)	287, 392, 421, 479, 794, 815
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	6 cut(s)	283, 388, 417, 475, 790, 811
Fnu4HI	GCNGC	3 cut(s)	25, 90, 516
FokI	GGATG	1 cut(s)	642
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	3 cut(s)	25, 90, 516
FspBI	CTAG	5 cut(s)	309, 512, 945, 1053, 1066
GlaI	GCGC	2 cut(s)	655, 727
GluI	GCNGC	3 cut(s)	25, 90, 516
GsaI	CCCAGC	2 cut(s)	96, 522
GsuI	CTGGAG	2 cut(s)	472, 603
HaeII	RGCGCY	2 cut(s)	657, 729
HaeIII	GGCC	4 cut(s)	56, 182, 207, 1051
HapII	CCGG	2 cut(s)	58, 700
HhaI	GCGC	2 cut(s)	656, 728
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	6 cut(s)	287, 392, 421, 479, 794, 815
Hin6I	GCGC	2 cut(s)	654, 726
HinP1I	GCGC	2 cut(s)	654, 726
HincII	GTYRAC	1 cut(s)	1025
HindII	GTYRAC	1 cut(s)	1025
HindIII	AAGCTT	1 cut(s)	716
HinfI	GANTC	5 cut(s)	322, 581, 773, 1021, 1043
HpaII	CCGG	2 cut(s)	58, 700
Hpy166II	GTNNAC	1 cut(s)	1025
Hpy188I	TCNGA	4 cut(s)	327, 499, 565, 898
Hpy188III	TCNNGA	3 cut(s)	334, 451, 556
Hpy8I	GTNNAC	1 cut(s)	1025
HpyAV	CCTTC	5 cut(s)	340, 352, 379, 764, 893
HpyCH4III	ACNGT	1 cut(s)	927
HpyCH4IV	ACGT	2 cut(s)	353, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 1007, 1057
HpyF3I	CTNAG	5 cut(s)	72, 505, 579, 741, 890
HpySE526I	ACGT	2 cut(s)	353, 488
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	6 cut(s)	287, 392, 421, 479, 794, 815
HspAI	GCGC	2 cut(s)	654, 726
KasI	GGCGCC	1 cut(s)	725
Kzo9I	GATC	4 cut(s)	494, 565, 703, 886
LmnI	GCTCC	3 cut(s)	268, 361, 689
Lsp1109I	GCAGC	2 cut(s)	36, 502
LweI	GCATC	4 cut(s)	229, 522, 774, 835
MaeI	CTAG	5 cut(s)	309, 512, 945, 1053, 1066
MaeII	ACGT	2 cut(s)	353, 488
MaeIII	GTNAC	4 cut(s)	413, 749, 927, 977
MalI	GATC	4 cut(s)	496, 567, 705, 888
MboI	GATC	4 cut(s)	494, 565, 703, 886
MboII	GAAGA	3 cut(s)	96, 237, 324
MflI	RGATCY	2 cut(s)	565, 886
MhlI	GDGCHC	2 cut(s)	265, 366
MlsI	TGGCCA	1 cut(s)	207
MluNI	TGGCCA	1 cut(s)	207
Mly113I	GGCGCC	1 cut(s)	726
MlyI	GAGTC	4 cut(s)	590, 782, 1030, 1052
MnlI	CCTC	9 cut(s)	132, 171, 376, 493, 588, 627, 750, 832, 877
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	8 cut(s)	162, 380, 641, 720, 797, 822, 869, 933
MslI	CAYNNNNRTG	1 cut(s)	474
Msp20I	TGGCCA	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	2 cut(s)	58, 700
MspR9I	CCNGG	4 cut(s)	58, 59, 621, 701
MvaI	CCWGG	1 cut(s)	621
MwoI	GCNNNNNNNGC	3 cut(s)	255, 1007, 1057
NarI	GGCGCC	1 cut(s)	726
NciI	CCSGG	3 cut(s)	58, 59, 701
NdeII	GATC	4 cut(s)	494, 565, 703, 886
NheI	GCTAGC	1 cut(s)	511
NlaIII	CATG	6 cut(s)	287, 392, 421, 479, 794, 815
NlaIV	GGNNCC	4 cut(s)	363, 567, 615, 727
NmuCI	GTSAC	1 cut(s)	413
NspI	RCATGY	2 cut(s)	392, 815
PciI	ACATGT	1 cut(s)	388
PfeI	GAWTC	1 cut(s)	322
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	3 cut(s)	26, 91, 517
PleI	GAGTC	4 cut(s)	589, 781, 1029, 1051
PluTI	GGCGCC	1 cut(s)	729
PpsI	GAGTC	4 cut(s)	589, 781, 1029, 1051
Ppu21I	YACGTR	1 cut(s)	354
PscI	ACATGT	1 cut(s)	388
Psp6I	CCWGG	1 cut(s)	619
PspEI	GGTNACC	1 cut(s)	749
PspFI	CCCAGC	2 cut(s)	92, 518
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	4 cut(s)	363, 567, 615, 727
PspPI	GGNCC	3 cut(s)	55, 180, 1049
PsuI	RGATCY	2 cut(s)	565, 886
RsaI	GTAC	2 cut(s)	47, 539
RsaNI	GTAC	2 cut(s)	46, 538
RseI	CAYNNNNRTG	1 cut(s)	474
SaqAI	TTAA	8 cut(s)	162, 380, 641, 720, 797, 822, 869, 933
SatI	GCNGC	3 cut(s)	25, 90, 516
Sau3AI	GATC	4 cut(s)	494, 565, 703, 886
Sau96I	GGNCC	3 cut(s)	55, 180, 1049
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	4 cut(s)	590, 782, 1030, 1052
ScrFI	CCNGG	4 cut(s)	58, 59, 621, 701
SduI	GDGCHC	2 cut(s)	265, 366
SfaNI	GCATC	4 cut(s)	229, 522, 774, 835
SfoI	GGCGCC	1 cut(s)	727
SmaI	CCCGGG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	334, 932
SmoI	CTYRAG	2 cut(s)	334, 932
SsiI	CCGC	2 cut(s)	89, 258
SspDI	GGCGCC	1 cut(s)	725
SspMI	CTAG	5 cut(s)	309, 512, 945, 1053, 1066
StyD4I	CCNGG	4 cut(s)	56, 57, 619, 699
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	1 cut(s)	927
TaiI	ACGT	2 cut(s)	356, 491
TaqI	TCGA	1 cut(s)	584
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	8 cut(s)	162, 380, 641, 720, 797, 822, 869, 933
Tru9I	TTAA	8 cut(s)	162, 380, 641, 720, 797, 822, 869, 933
TscAI	CASTG	1 cut(s)	774
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	2 cut(s)	24, 515
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	272, 779, 930
TspMI	CCCGGG	1 cut(s)	57
TspRI	CASTG	1 cut(s)	774
Vha464I	CTTAAG	1 cut(s)	932
XapI	RAATTY	3 cut(s)	190, 559, 643
XceI	RCATGY	2 cut(s)	392, 815
XmaI	CCCGGG	1 cut(s)	57
XspI	CTAG	5 cut(s)	309, 512, 945, 1053, 1066
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.