Rh1BG318900

peptidyl-prolyl cis-trans isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002895
Physical Location & Seq
Reverse (-)
45283926 .. 45290058
6133 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG318900.1

Sequence Viewer

Length: 384 bp
ATGGAAGCTCTTCTTCAAAATTGGGAATTTGGGAAAACGATGCAAGTCGAAGGTACATGTGGACAGTTTGCTATGAAATTCGGTGAGATGACGATAGTAGCCTGTACTGATGTAGAGATAGGGAAGCGTGATGAACCATATCTACTGTCCATGGCAAACCATGACAAGATATTGACAATTGGATCTCAGTTCTTCATTACATTCTCTAGTTTGACTCATCTCAACGGGAGACACATTGTCTTTGGCAAGGTTGTGGATGGGATCGATATACTTATGGAGATGGAGCACGTCCCAACATTTTTGGGTAGACCACAGGTACCAGTGGAGATTGTAGGATTTGGTGATTTTCCAGAGATAGAAGTAGGCATAGTGACGGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIAA1430 Pro_isomerase

Protein Analysis

127

Amino Acids

14.15

Weight (kDa)

4.6

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 42 - 112 7.8e-17 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 307
AclWI GGATC 2 cut(s) 190, 269
AcsI RAATTY 2 cut(s) 26, 77
AfaI GTAC 3 cut(s) 55, 106, 318
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 1 cut(s) 17
AhdI GACNNNNNGTC 1 cut(s) 236
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 2 cut(s) 190, 269
ApoI RAATTY 2 cut(s) 26, 77
Asp700I GAANNNNTTC 1 cut(s) 9
Asp718I GGTACC 1 cut(s) 316
AsuHPI GGTGA 2 cut(s) 95, 353
BanI GGYRCC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 2 cut(s) 251, 274
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 1 cut(s) 207
BmeRI GACNNNNNGTC 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 289
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 1 cut(s) 30
Bsa29I ATCGAT 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 320
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 262
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 316
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 275
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 2 cut(s) 182, 261
Bsp19I CCATGG 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 2 cut(s) 190, 269
BspQI GCTCTTC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 316
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 2 cut(s) 182, 261
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 66, 147
Bst6I CTCTTC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 2 cut(s) 185, 264
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 182, 261
BstNSI RCATGY 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 327
ClaI ATCGAT 1 cut(s) 264
Csp6I GTAC 3 cut(s) 54, 105, 317
CviAII CATG 3 cut(s) 57, 151, 161
CviJI RGCY 2 cut(s) 8, 101
CviKI_1 RGCY 2 cut(s) 8, 101
CviQI GTAC 3 cut(s) 54, 105, 317
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 184, 263
DpnII GATC 2 cut(s) 182, 261
DriI GACNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 60, 154, 164
FaiI YATR 9 cut(s) 58, 74, 139, 152, 162, 269, 275, 368, 382
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 1 cut(s) 275
FatI CATG 3 cut(s) 56, 150, 160
FblI GTMKAC 1 cut(s) 307
FokI GGATG 1 cut(s) 269
FspBI CTAG 1 cut(s) 207
Hin1II CATG 3 cut(s) 60, 154, 164
HinfI GANTC 1 cut(s) 214
HphI GGTGA 2 cut(s) 95, 353
Hpy166II GTNNAC 2 cut(s) 62, 308
Hpy188III TCNNGA 1 cut(s) 350
Hpy8I GTNNAC 2 cut(s) 62, 308
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 66, 147
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 3 cut(s) 60, 154, 164
KpnI GGTACC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 182, 261
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 4 cut(s) 115, 299, 333, 363
LweI GCATC 1 cut(s) 30
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 288
MaeIII GTNAC 1 cut(s) 370
MalI GATC 2 cut(s) 184, 263
MboI GATC 2 cut(s) 182, 261
MboII GAAGA 2 cut(s) 5, 184
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 4 cut(s) 19, 26, 77, 177
MlyI GAGTC 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 9
MunI CAATTG 1 cut(s) 177
NcoI CCATGG 1 cut(s) 150
NdeII GATC 2 cut(s) 182, 261
NlaIII CATG 3 cut(s) 60, 154, 164
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 370
NspI RCATGY 1 cut(s) 60
PciI ACATGT 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 9
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 318
PsrI GAACNNNNNNTAC 2 cut(s) 126, 158
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 3 cut(s) 55, 106, 318
RsaNI GTAC 3 cut(s) 54, 105, 317
SapI GCTCTTC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 182, 261
SchI GAGTC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 288
SetI ASST 5 cut(s) 10, 55, 252, 291, 318
SfaNI GCATC 1 cut(s) 30
Sse9I AATT 4 cut(s) 19, 26, 77, 177
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 66, 147
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 48, 264
TasI AATT 4 cut(s) 19, 26, 77, 177
TatI WGTACW 1 cut(s) 104
TscAI CASTG 1 cut(s) 327
TseFI GTSAC 1 cut(s) 370
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 3 cut(s) 89, 147, 184
TspRI CASTG 1 cut(s) 327
XapI RAATTY 2 cut(s) 26, 77
XceI RCATGY 1 cut(s) 60
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.