FvH4_6g42250

peptidyl-prolyl cis-trans isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002895
Physical Location & Seq
Reverse (-)
33004917 .. 33006130
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42250.t1

Sequence Viewer

Length: 633 bp
ATGGCCAAGAAGAAGAATAAAGGCACCAACGAGGAGAAACCTCTGGTCTACTTGGAGATAGAAATTGATAGCGTGAAGAAAGGACAAATTGAAATCAAGCTGTTTGATGACCAGGTTCCAAGTACGGCCAAAAATTTTAGAAATCTTTGTAAAGGTTACCAGAGACCCGGAAGTTCCGGAGAATCGCCGCAACTCCTCCAATATAAAGGATCCAAATTTCATCTCATAAACAAAGGACTTCAAGCCCAAGGTGGTGACTTTACAACCGGCGATGGAACCGGTGGACAGTTTGCTGTAAAATCTAGTGACAATAAATGTTTTCCGGTTACTGATCCTGTTGAGAACATAGGGAAGCATGACGAACCCTATTTACTATCGATGGCAAACCATGAAGGCATATTGACAATTGGATCACAGTTTTTCATCACTTTCTCATGTTTGCCTCAGCTCGACGGGAAACATGTTGTTTTCGGCAAGGTTGTGAACGGGATGGACATACTTCATGAGATGGAGAGCGTCCCAACTTATCTCGGAAGACCAATGGTGCCGGTAGTTATTGTAGGTTGTGGTGAGATCGATAAGGAGTTAATTAAGGACAAAAACCTCCCAGCTGTGACAGACGCAGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIAA1430 Pro_isomerase

Protein Analysis

211

Amino Acids

22.96

Weight (kDa)

6.52

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 18 - 190 2.2e-37 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 23, 544
AccI GTMKAC 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 1 cut(s) 188
AclWI GGATC 4 cut(s) 204, 217, 326, 418
AcoI YGGCCR 2 cut(s) 3, 126
AcsI RAATTY 2 cut(s) 133, 215
AfaI GTAC 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 460
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 2 cut(s) 92, 242
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 3 cut(s) 100, 448, 611
AluI AGCT 3 cut(s) 100, 448, 611
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 4 cut(s) 204, 217, 326, 418
Aor13HI TCCGGA 1 cut(s) 176
AoxI GGCC 2 cut(s) 3, 126
ApoI RAATTY 2 cut(s) 133, 215
AsiGI ACCGGT 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 168
AsuHPI GGTGA 2 cut(s) 266, 581
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 209
BanI GGYRCC 2 cut(s) 23, 544
BbsI GAAGAC 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 444
BccI CCATC 4 cut(s) 266, 373, 484, 502
BceAI ACGGC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 168
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 1 cut(s) 303
BisI GCNGC 1 cut(s) 188
BlsI GCNGC 1 cut(s) 189
Bme1390I CCNGG 2 cut(s) 113, 168
BmiI GGNNCC 5 cut(s) 25, 117, 211, 277, 546
BmrFI CCNGG 2 cut(s) 113, 168
BpiI GAAGAC 1 cut(s) 541
Bpu10I CCTNAGC 1 cut(s) 444
BpuMI CCSGG 1 cut(s) 168
Bsa29I ATCGAT 2 cut(s) 377, 576
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 247
BsaWI WCCGGW 3 cut(s) 176, 278, 322
Bse118I RCCGGY 3 cut(s) 266, 278, 547
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 2 cut(s) 377, 576
BseDI CCNNGG 1 cut(s) 247
BseGI GGATG 1 cut(s) 495
BseMII CTCAG 1 cut(s) 458
BseRI GAGGAG 2 cut(s) 47, 185
BseYI CCCAGC 1 cut(s) 607
BshFI GGCC 2 cut(s) 5, 128
BshNI GGYRCC 2 cut(s) 23, 544
BshTI ACCGGT 1 cut(s) 278
BshVI ATCGAT 2 cut(s) 377, 576
BsiSI CCGG 6 cut(s) 168, 177, 267, 279, 323, 548
BslFI GGGAC 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 2 cut(s) 5, 128
Bso31I GGTCTC 1 cut(s) 157
Bsp13I TCCGGA 1 cut(s) 176
Bsp143I GATC 4 cut(s) 209, 331, 410, 573
BspACI CCGC 1 cut(s) 188
BspANI GGCC 2 cut(s) 5, 128
BspCNI CTCAG 1 cut(s) 457
BspDI ATCGAT 2 cut(s) 377, 576
BspEI TCCGGA 1 cut(s) 176
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 5 cut(s) 25, 117, 211, 277, 546
BspPI GGATC 4 cut(s) 204, 217, 326, 418
BspT107I GGYRCC 2 cut(s) 23, 544
BspTNI GGTCTC 1 cut(s) 157
BsrFI RCCGGY 3 cut(s) 266, 278, 547
BssAI RCCGGY 3 cut(s) 266, 278, 547
BssECI CCNNGG 1 cut(s) 247
BssMI GATC 4 cut(s) 209, 331, 410, 573
BssT1I CCWWGG 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 288, 417
BstDEI CTNAG 1 cut(s) 444
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 1 cut(s) 495
BstKTI GATC 4 cut(s) 212, 334, 413, 576
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 4 cut(s) 209, 331, 410, 573
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 464
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 111, 166
BstV2I GAAGAC 1 cut(s) 541
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
Bsu15I ATCGAT 2 cut(s) 377, 576
BsuRI GGCC 2 cut(s) 5, 128
BsuTUI ATCGAT 2 cut(s) 377, 576
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 495
CciI TCATGA 1 cut(s) 502
Cfr10I RCCGGY 3 cut(s) 266, 278, 547
ClaI ATCGAT 2 cut(s) 377, 576
CseI GACGC 1 cut(s) 505
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 1 cut(s) 123
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 5 cut(s) 356, 389, 435, 461, 503
CviJI RGCY 6 cut(s) 5, 100, 128, 245, 448, 611
CviKI_1 RGCY 6 cut(s) 5, 100, 128, 245, 448, 611
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 1 cut(s) 444
DpnI GATC 4 cut(s) 211, 333, 412, 575
DpnII GATC 4 cut(s) 209, 331, 410, 573
EaeI YGGCCR 2 cut(s) 3, 126
Eco130I CCWWGG 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 157
Eco91I GGTNACC 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 5 cut(s) 359, 392, 438, 464, 506
FaqI GGGAC 1 cut(s) 503
FatI CATG 5 cut(s) 355, 388, 434, 460, 502
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 188
FokI GGATG 1 cut(s) 502
Fsp4HI GCNGC 1 cut(s) 188
FspBI CTAG 1 cut(s) 303
GluI GCNGC 1 cut(s) 188
GsaI CCCAGC 1 cut(s) 611
HaeIII GGCC 2 cut(s) 5, 128
HapII CCGG 6 cut(s) 168, 177, 267, 279, 323, 548
HgaI GACGC 1 cut(s) 505
Hin1II CATG 5 cut(s) 359, 392, 438, 464, 506
HinfI GANTC 1 cut(s) 182
HpaII CCGG 6 cut(s) 168, 177, 267, 279, 323, 548
HphI GGTGA 2 cut(s) 266, 581
Hpy166II GTNNAC 3 cut(s) 49, 284, 484
Hpy188I TCNGA 1 cut(s) 533
Hpy188III TCNNGA 2 cut(s) 177, 503
Hpy8I GTNNAC 3 cut(s) 49, 284, 484
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 2 cut(s) 288, 417
HpyF3I CTNAG 1 cut(s) 444
Hsp92II CATG 5 cut(s) 359, 392, 438, 464, 506
Kpn2I TCCGGA 1 cut(s) 176
Kzo9I GATC 4 cut(s) 209, 331, 410, 573
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 5 cut(s) 155, 254, 305, 325, 613
MalI GATC 4 cut(s) 211, 333, 412, 575
MboI GATC 4 cut(s) 209, 331, 410, 573
MboII GAAGA 4 cut(s) 22, 25, 88, 546
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 1 cut(s) 209
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 63, 87, 133, 215, 405, 588
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 25, 51, 206, 453, 614
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 176
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 587, 591
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 6 cut(s) 168, 177, 267, 279, 323, 548
MspR9I CCNGG 2 cut(s) 113, 168
MunI CAATTG 1 cut(s) 405
MvaI CCWGG 1 cut(s) 113
NciI CCSGG 1 cut(s) 168
NdeII GATC 4 cut(s) 209, 331, 410, 573
NlaIII CATG 5 cut(s) 359, 392, 438, 464, 506
NlaIV GGNNCC 5 cut(s) 25, 117, 211, 277, 546
NmuCI GTSAC 3 cut(s) 254, 305, 613
NspI RCATGY 1 cut(s) 464
PacI TTAATTAA 1 cut(s) 591
PagI TCATGA 1 cut(s) 502
PciI ACATGT 1 cut(s) 460
PfeI GAWTC 1 cut(s) 182
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 1 cut(s) 189
PscI ACATGT 1 cut(s) 460
Psp6I CCWGG 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 607
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 5 cut(s) 25, 117, 211, 277, 546
PsrI GAACNNNNNNTAC 2 cut(s) 354, 386
PsuI RGATCY 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 587, 591
SatI GCNGC 1 cut(s) 188
Sau3AI GATC 4 cut(s) 209, 331, 410, 573
ScrFI CCNGG 2 cut(s) 113, 168
SexAI ACCWGGT 1 cut(s) 111
Sse9I AATT 6 cut(s) 63, 87, 133, 215, 405, 588
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 303
StyD4I CCNGG 2 cut(s) 111, 166
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 288, 417
TaqI TCGA 3 cut(s) 377, 450, 576
TasI AATT 6 cut(s) 63, 87, 133, 215, 405, 588
TauI GCSGC 1 cut(s) 190
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 587, 591
Tru9I TTAA 2 cut(s) 587, 591
TseFI GTSAC 3 cut(s) 254, 305, 613
Tsp45I GTSAC 3 cut(s) 254, 305, 613
TspDTI ATGAA 4 cut(s) 209, 405, 412, 491
XapI RAATTY 2 cut(s) 133, 215
XceI RCATGY 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 48
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.