Rh1CG332900

peptidyl-prolyl cis-trans isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002895
Physical Location & Seq
Reverse (-)
60728855 .. 60789909
61055 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG332900.1

Sequence Viewer

Length: 396 bp
ATGGAAGCTCTTCTTCAAAATTGGGAATTTGGGAAAACGATGCAAGTCGAAGGTACATGTGGACAGTTTGCTATGAAATTCGGTGAGATGACGATAGTAGCCTGTACTGATGTAGAGATAGGGAAGCGTGATGAACCATATCTACTGTCCATGGCAAACCATGACAAGATATTGACAATTGGATCTCAGTTCTTCATTACATTCTCTAGTTTGACTCATCTCAACGGGAGACACATTGTCTTTGGCAAGGTTGTGGATGGGATCGATATACTTATGGAGATGGAGCACGTCCCAACATTTTTGGGTAGACCACAGCCTTTCGCATCTTCAAAGTCTCTCTCTTTCTCCGAGATCAGGAGCTACCATCAGGTAAATGGGTTTGTGGACGCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIAA1430 Pro_isomerase

Protein Analysis

131

Amino Acids

14.7

Weight (kDa)

5.43

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 42 - 100 1.4e-15 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 307
AclWI GGATC 2 cut(s) 190, 269
AcsI RAATTY 2 cut(s) 26, 77
AfaI GTAC 2 cut(s) 55, 106
AfiI CCNNNNNNNGG 1 cut(s) 354
AflIII ACRYGT 1 cut(s) 56
AgsI TTSAA 2 cut(s) 17, 330
AhdI GACNNNNNGTC 1 cut(s) 236
AjiI CACGTC 1 cut(s) 289
AluBI AGCT 2 cut(s) 8, 360
AluI AGCT 2 cut(s) 8, 360
Alw21I GWGCWC 1 cut(s) 288
Alw26I GTCTC 2 cut(s) 223, 339
AlwI GGATC 2 cut(s) 190, 269
ApoI RAATTY 2 cut(s) 26, 77
Asp700I GAANNNNTTC 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 288
BccI CCATC 3 cut(s) 251, 274, 372
BcoDI GTCTC 2 cut(s) 223, 339
BfaI CTAG 1 cut(s) 207
BmeRI GACNNNNNGTC 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 289
BmsI GCATC 2 cut(s) 30, 332
Bsa29I ATCGAT 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 354
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 200
BshVI ATCGAT 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 288
BslFI GGGAC 1 cut(s) 275
BslI CCNNNNNNNGG 1 cut(s) 354
BsmAI GTCTC 2 cut(s) 223, 339
BsmFI GGGAC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 182, 261, 351
Bsp19I CCATGG 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 199
BspDI ATCGAT 1 cut(s) 264
BspPI GGATC 2 cut(s) 190, 269
BspQI GCTCTTC 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 182, 261, 351
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 66, 147
Bst6I CTCTTC 1 cut(s) 15
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 3 cut(s) 185, 264, 354
BstMAI GTCTC 2 cut(s) 223, 339
BstMBI GATC 3 cut(s) 182, 261, 351
BstNSI RCATGY 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
Bsu15I ATCGAT 1 cut(s) 264
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 289
BtsCI GGATG 1 cut(s) 262
ClaI ATCGAT 1 cut(s) 264
Csp6I GTAC 2 cut(s) 54, 105
CviAII CATG 3 cut(s) 57, 151, 161
CviJI RGCY 4 cut(s) 8, 101, 316, 360
CviKI_1 RGCY 4 cut(s) 8, 101, 316, 360
CviQI GTAC 2 cut(s) 54, 105
DdeI CTNAG 1 cut(s) 186
DpnI GATC 3 cut(s) 184, 263, 353
DpnII GATC 3 cut(s) 182, 261, 351
DriI GACNNNNNGTC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 15
Eam1105I GACNNNNNGTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 60, 154, 164
FaiI YATR 7 cut(s) 58, 74, 139, 152, 162, 269, 275
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 1 cut(s) 275
FatI CATG 3 cut(s) 56, 150, 160
FblI GTMKAC 1 cut(s) 307
FokI GGATG 1 cut(s) 269
FspBI CTAG 1 cut(s) 207
Hin1II CATG 3 cut(s) 60, 154, 164
HinfI GANTC 1 cut(s) 214
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 62, 308, 385
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 3 cut(s) 62, 308, 385
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 66, 147
HpyCH4IV ACGT 1 cut(s) 288
HpyCH4V TGCA 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 288
Hsp92II CATG 3 cut(s) 60, 154, 164
Kzo9I GATC 3 cut(s) 182, 261, 351
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 2 cut(s) 283, 357
LpnPI CCDG 3 cut(s) 115, 340, 353
LweI GCATC 2 cut(s) 30, 332
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 288
MalI GATC 3 cut(s) 184, 263, 353
MboI GATC 3 cut(s) 182, 261, 351
MboII GAAGA 3 cut(s) 5, 184, 318
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 288
MluCI AATT 4 cut(s) 19, 26, 77, 177
MlyI GAGTC 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 9
MunI CAATTG 1 cut(s) 177
NcoI CCATGG 1 cut(s) 150
NdeII GATC 3 cut(s) 182, 261, 351
NlaIII CATG 3 cut(s) 60, 154, 164
NspI RCATGY 1 cut(s) 60
PciI ACATGT 1 cut(s) 56
PciSI GCTCTTC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 9
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PscI ACATGT 1 cut(s) 56
PsrI GAACNNNNNNTAC 2 cut(s) 126, 158
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 2 cut(s) 55, 106
RsaNI GTAC 2 cut(s) 54, 105
SapI GCTCTTC 1 cut(s) 15
Sau3AI GATC 3 cut(s) 182, 261, 351
SchI GAGTC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 288
SetI ASST 6 cut(s) 10, 55, 252, 291, 362, 372
SfaNI GCATC 2 cut(s) 30, 332
Sse9I AATT 4 cut(s) 19, 26, 77, 177
SspMI CTAG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 66, 147
TaiI ACGT 1 cut(s) 291
TaqI TCGA 2 cut(s) 48, 264
TasI AATT 4 cut(s) 19, 26, 77, 177
TatI WGTACW 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 89, 147, 184
XapI RAATTY 2 cut(s) 26, 77
XceI RCATGY 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XmiI GTMKAC 1 cut(s) 307
XmnI GAANNNNTTC 1 cut(s) 9
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.