RLG00000027155

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002895
Physical Location & Seq
Forward (+)
9096128 .. 9097640
1513 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027155

Sequence Viewer

Length: 576 bp
ATGTACCTCATCGATCTTGATTACTTGTTTGGTGGTGCCGACCCGCTTTCCCTTCTTGTTTTTCCCGGTCATGTTGTTCCTCGATTGAAGAAAGCCCTTCTGCTCTGGATCCGGGCGGGACTACGGCTTCTTCACTGTGAATCTTTCCACTCCAGCAGTTATCCGAGAAAAAAAGGGCCATGCCTCCACTATAAAGGATCGAAATTTCATCTTATAAATAGAGGACTTGCAGCTCAGGGTGGTGACTTTAGCGCCGGTGATGGCACAGGTGGACAGTTTGCCATGAGATTCAGTGATACGATGACAGTAACCTGTACTGATGAAAAGATAGGCAAGCATGATGAGCCATATCTACTGTCCATGGCAAACCATGACAAGATATTGACTATTGGCTCTCAATTCTTCATTACATTCTCCAGTTTGACTCATCTCGACAGGAGACACGTTGTCTTCGGCAAGGTTTTGGATGGGATCAATATACTCAAAGAGATGGAGCACGTCCCAACATTTTTAGGTAGACCACAGGTTCCAGTGGAGATTGTAGGATGTGGTGACTTTCCAGAGAAGCAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

192

Amino Acids

21.23

Weight (kDa)

8.34

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 59 - 184 1.1e-23 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 215
AccB1I GGYRCC 1 cut(s) 35
AccI GTMKAC 1 cut(s) 517
AciI CCGC 2 cut(s) 44, 116
AclWI GGATC 4 cut(s) 103, 116, 205, 479
AcsI RAATTY 1 cut(s) 203
AfaI GTAC 2 cut(s) 5, 316
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 1 cut(s) 88
AhdI GACNNNNNGTC 1 cut(s) 446
AjiI CACGTC 1 cut(s) 499
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 4 cut(s) 103, 116, 205, 479
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 203
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 2 cut(s) 66, 113
AsuHPI GGTGA 3 cut(s) 254, 269, 563
BamHI GGATCC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 442
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 242
BccI CCATC 3 cut(s) 254, 461, 484
BceAI ACGGC 1 cut(s) 140
BcnI CCSGG 2 cut(s) 66, 113
BcoDI GTCTC 1 cut(s) 433
BfoI RGCGCY 1 cut(s) 255
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 2 cut(s) 66, 113
BmeRI GACNNNNNGTC 1 cut(s) 446
BmgBI CACGTC 1 cut(s) 499
BmgT120I GGNCC 1 cut(s) 176
BmiI GGNNCC 3 cut(s) 37, 110, 528
BmrFI CCNGG 2 cut(s) 66, 113
BpiI GAAGAC 1 cut(s) 442
BpmI CTGGAG 2 cut(s) 136, 400
Bpu10I CCTNAGC 1 cut(s) 234
BpuMI CCSGG 2 cut(s) 66, 113
Bsa29I ATCGAT 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 360
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 417, 530
BseCI ATCGAT 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 2 cut(s) 472, 551
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 2 cut(s) 417, 530
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 35
BshVI ATCGAT 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 498
BsiSI CCGG 3 cut(s) 66, 112, 255
BslFI GGGAC 2 cut(s) 132, 485
BsmAI GTCTC 1 cut(s) 433
BsmFI GGGAC 2 cut(s) 132, 485
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 4 cut(s) 13, 108, 197, 471
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 2 cut(s) 44, 116
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 1 cut(s) 247
BspDI ATCGAT 1 cut(s) 12
BspLI GGNNCC 3 cut(s) 37, 110, 528
BspPI GGATC 4 cut(s) 103, 116, 205, 479
BspT107I GGYRCC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 2 cut(s) 417, 530
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 4 cut(s) 13, 108, 197, 471
BssT1I CCWWGG 1 cut(s) 360
Bst4CI ACNGT 4 cut(s) 137, 276, 307, 357
BstC8I GCNNGC 2 cut(s) 335, 570
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 360
BstF5I GGATG 2 cut(s) 472, 551
BstH2I RGCGCY 1 cut(s) 255
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 4 cut(s) 16, 111, 200, 474
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 4 cut(s) 13, 108, 197, 471
BstMWI GCNNNNNNNGC 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 64, 111
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
Bsu15I ATCGAT 1 cut(s) 12
BsuRI GGCC 1 cut(s) 178
BsuTUI ATCGAT 1 cut(s) 12
BtgI CCRYGG 1 cut(s) 360
BtrI CACGTC 1 cut(s) 499
BtsCI GGATG 2 cut(s) 472, 551
BtsIMutI CAGTG 3 cut(s) 133, 298, 537
Cac8I GCNNGC 2 cut(s) 335, 570
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 12
Csp6I GTAC 2 cut(s) 4, 315
CviAII CATG 6 cut(s) 71, 180, 283, 338, 361, 371
CviJI RGCY 6 cut(s) 95, 127, 178, 233, 346, 393
CviKI_1 RGCY 6 cut(s) 95, 127, 178, 233, 346, 393
CviQI GTAC 2 cut(s) 4, 315
DdeI CTNAG 1 cut(s) 234
DpnI GATC 4 cut(s) 15, 110, 199, 473
DpnII GATC 4 cut(s) 13, 108, 197, 471
DriI GACNNNNNGTC 1 cut(s) 446
Eam1105I GACNNNNNGTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 360
FaeI CATG 6 cut(s) 74, 183, 286, 341, 364, 374
FaqI GGGAC 2 cut(s) 132, 485
FatI CATG 6 cut(s) 70, 179, 282, 337, 360, 370
FauI CCCGC 2 cut(s) 51, 109
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 2 cut(s) 479, 558
Fsp4HI GCNGC 1 cut(s) 231
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 231
GsuI CTGGAG 2 cut(s) 136, 400
HaeII RGCGCY 1 cut(s) 255
HaeIII GGCC 1 cut(s) 178
HapII CCGG 3 cut(s) 66, 112, 255
HhaI GCGC 1 cut(s) 254
Hin1II CATG 6 cut(s) 74, 183, 286, 341, 364, 374
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 3 cut(s) 140, 288, 424
HpaII CCGG 3 cut(s) 66, 112, 255
HphI GGTGA 3 cut(s) 254, 269, 563
Hpy166II GTNNAC 2 cut(s) 272, 518
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 4 cut(s) 17, 106, 431, 560
Hpy8I GTNNAC 2 cut(s) 272, 518
HpyAV CCTTC 2 cut(s) 62, 107
HpyCH4III ACNGT 4 cut(s) 137, 276, 307, 357
HpyCH4IV ACGT 2 cut(s) 444, 498
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 343
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 2 cut(s) 444, 498
Hsp92II CATG 6 cut(s) 74, 183, 286, 341, 364, 374
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 4 cut(s) 13, 108, 197, 471
LmnI GCTCC 1 cut(s) 493
Lsp1109I GCAGC 1 cut(s) 242
MaeII ACGT 2 cut(s) 444, 498
MaeIII GTNAC 3 cut(s) 242, 307, 551
MalI GATC 4 cut(s) 15, 110, 199, 473
MboI GATC 4 cut(s) 13, 108, 197, 471
MboII GAAGA 4 cut(s) 100, 122, 394, 442
MflI RGATCY 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 2 cut(s) 203, 398
MlyI GAGTC 1 cut(s) 418
MnlI CCTC 4 cut(s) 17, 90, 194, 215
MspI CCGG 3 cut(s) 66, 112, 255
MspR9I CCNGG 2 cut(s) 66, 113
MwoI GCNNNNNNNGC 1 cut(s) 343
NciI CCSGG 2 cut(s) 66, 113
NcoI CCATGG 1 cut(s) 360
NdeII GATC 4 cut(s) 13, 108, 197, 471
NlaIII CATG 6 cut(s) 74, 183, 286, 341, 364, 374
NlaIV GGNNCC 3 cut(s) 37, 110, 528
NmuCI GTSAC 2 cut(s) 242, 551
PfeI GAWTC 2 cut(s) 140, 288
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PsiI TTATAA 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 37, 110, 528
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 108
RsaI GTAC 2 cut(s) 5, 316
RsaNI GTAC 2 cut(s) 4, 315
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 4 cut(s) 13, 108, 197, 471
Sau96I GGNCC 1 cut(s) 176
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 2 cut(s) 66, 113
SduI GDGCHC 1 cut(s) 498
SetI ASST 9 cut(s) 9, 235, 271, 314, 447, 462, 501, 517, 528
SgrAI CRCCGGYG 1 cut(s) 254
Sse9I AATT 2 cut(s) 203, 398
SsiI CCGC 2 cut(s) 44, 116
StyD4I CCNGG 2 cut(s) 64, 111
StyI CCWWGG 1 cut(s) 360
TaaI ACNGT 4 cut(s) 137, 276, 307, 357
TaiI ACGT 2 cut(s) 447, 501
TaqI TCGA 4 cut(s) 12, 82, 200, 432
TasI AATT 2 cut(s) 203, 398
TatI WGTACW 1 cut(s) 314
TfiI GAWTC 2 cut(s) 140, 288
TscAI CASTG 3 cut(s) 140, 298, 537
TseFI GTSAC 2 cut(s) 242, 551
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 2 cut(s) 242, 551
TspDTI ATGAA 3 cut(s) 197, 336, 394
TspRI CASTG 3 cut(s) 140, 298, 537
XapI RAATTY 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.