Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002895

Physical Location & Seq

Genomic Coordinates Forward (+)

33034272 .. 33035382

Gene Structure 1111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0206900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATGCCATAGACGAGATGGCTATGAGGTTGGCTGCTTCGATGGGATTGGCTGATGGCACACGGTGCAGGAGCATGATGATCGCTTCCTTTTCACGTTATCGGACCCTTCGGATTGGAGTCGTTTACTCCGTGGAGGTCCTTGGGGTTTTGACCGAGCACAGGTCTTCCTCCGGCCTTTCATTCGGACTGGTGTCTCCGTCGTCTTGGCTGCGCCCTAGGGCGGTATCTACAAAAGCACATGGTAGAGTTTCAGGCGGGCCGGATCCGGATCAGAGTAGGGATGGACTTGATGCAAACGATGTTGGTCTACCGCTAGAGGAGGCTTTAAGAGATTCAGTCTCTCCGGCGCGGCGTAACCTAGAGCGATTCTTGGCTAGGGTCAATAACACACCTACTGCTGGTCCATCAATGATTTTCGGAGCACAGATGGGACGAGACGGTGAAGCTGGGTTAGCTCGGTCCATGCCTACGACAACGCCAAAGCCGCAGGCTCGTCGGCTTATCCATTTGAGGACTGCAACAACTAGAGAGGGCACTTCCGGTAGTACTCCAGGGATTGAGGTGAATAGCGAGGCTGGCCAAGATGATGTCAGTTCTTTTGAAGGGTTAGAGGCCAGTGGAGAAAGCCGTAGTTTTGAGCTATCCTCCAGTGAGGAGATTCTGGATAATGGAACATCACAGGTCGTTGGTTTGCGGAGGAAGCGCATAAATGTGGTCAGGGTCTCCCTGAAGATACCGGGCTTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

250

Amino Acids

26.73

Weight (kDa)

8.97

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34870
fragaria_vesca	FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_2g22860 FvH4_6g42250 FvH4_7g21680 FvH4_7g21700
malus_domestica	MD03G1257000.v1.1 MD11G1277600.v1.1
prunus_persica	Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1 Prupe.8G233900_v2.0.a1
pyrus_communis	pycom03g20370 pycom11g24550
rosa_chinensis	RchiOBHm_Chr6g0289781
rosa_laevigata	RLG00000012267 RLG00000027155
rosa_multiflora	Rmu_sc0005640.1_g000007
rosa_roxburghii	Rroxscaffold_1G00032710 Rroxscaffold_7G00177550 Rroxscaffold_7G00178070
rosa_rugosa	Rorug06G0206700 Rorug06G0206800 Rorug06G0206900 Rorug06G0207000
rosa_samantha	Rh1BG318900 Rh1CG332900 Rh1DG349500 Rh6AG318400 Rh6BG325700 Rh6CG331600 Rh6DG317000
rosa_wichuraiana	Rw6G027470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	310
AccII	CGCG	1 cut(s)	352
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	6 cut(s)	224, 258, 314, 352, 488, 697
AclWI	GGATC	3 cut(s)	260, 273, 279
AcoI	YGGCCR	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	752
AdeI	CACNNNGTG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	3 cut(s)	162, 223, 401
AgsI	TTSAA	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	3 cut(s)	449, 458, 643
AluI	AGCT	3 cut(s)	449, 458, 643
Alw21I	GWGCWC	2 cut(s)	162, 427
Alw26I	GTCTC	4 cut(s)	201, 346, 432, 730
AlwI	GGATC	3 cut(s)	260, 273, 279
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	4 cut(s)	175, 260, 580, 615
ApeKI	GCWGC	2 cut(s)	35, 211
AspA2I	CCTAGG	1 cut(s)	218
AspLEI	GCGC	3 cut(s)	216, 352, 708
AspS9I	GGNCC	5 cut(s)	105, 139, 260, 404, 462
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	2 cut(s)	455, 577
AvaII	GGWCC	4 cut(s)	105, 139, 404, 462
AvrII	CCTAGG	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	539
BalI	TGGCCA	1 cut(s)	582
BamHI	GGATCC	1 cut(s)	265
BbsI	GAAGAC	1 cut(s)	159
Bbv12I	GWGCWC	2 cut(s)	162, 427
BbvI	GCAGC	2 cut(s)	22, 198
BccI	CCATC	6 cut(s)	13, 37, 50, 278, 415, 424
BceAI	ACGGC	1 cut(s)	615
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 479, 513
BciT130I	CCWGG	1 cut(s)	555
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	4 cut(s)	201, 346, 432, 730
BfaI	CTAG	6 cut(s)	219, 317, 362, 378, 528, 751
BisI	GCNGC	4 cut(s)	36, 212, 353, 488
BlnI	CCTAGG	1 cut(s)	218
BlpI	GCTNAGC	1 cut(s)	745
BlsI	GCNGC	4 cut(s)	37, 213, 354, 489
BmcAI	AGTACT	1 cut(s)	550
Bme1390I	CCNGG	2 cut(s)	555, 741
Bme18I	GGWCC	4 cut(s)	105, 139, 404, 462
BmgT120I	GGNCC	5 cut(s)	105, 139, 260, 404, 462
BmiI	GGNNCC	2 cut(s)	107, 267
BmrFI	CCNGG	2 cut(s)	555, 741
BmsI	GCATC	1 cut(s)	283
BoxI	GACNNNNGTC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	632, 664
BpmI	CTGGAG	2 cut(s)	537, 634
Bpu1102I	GCTNAGC	1 cut(s)	745
BpuMI	CCSGG	1 cut(s)	741
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	730
BsaJI	CCNNGG	4 cut(s)	132, 142, 218, 554
BsaWI	WCCGGW	2 cut(s)	268, 542
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 223, 401
Bse1I	ACTGG	3 cut(s)	195, 618, 651
Bse8I	GATNNNNATC	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	4 cut(s)	132, 142, 218, 554
BseGI	GGATG	2 cut(s)	10, 289
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	162, 223, 401
BseNI	ACTGG	3 cut(s)	195, 618, 651
BseRI	GAGGAG	2 cut(s)	335, 671
BseSI	GKGCMC	1 cut(s)	539
BseXI	GCAGC	2 cut(s)	22, 198
BseYI	CCCAGC	1 cut(s)	449
BsgI	GTGCAG	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	352
BshFI	GGCC	4 cut(s)	177, 262, 582, 617
BsiHKAI	GWGCWC	2 cut(s)	162, 427
BsiSI	CCGG	6 cut(s)	174, 263, 269, 347, 543, 740
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	162, 223, 401
BsmAI	GTCTC	4 cut(s)	201, 346, 432, 730
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	4 cut(s)	177, 262, 582, 617
Bso31I	GGTCTC	1 cut(s)	730
Bsp1286I	GDGCHC	3 cut(s)	162, 427, 539
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	3 cut(s)	81, 265, 271
Bsp1720I	GCTNAGC	1 cut(s)	745
BspACI	CCGC	6 cut(s)	224, 258, 314, 352, 488, 697
BspANI	GGCC	4 cut(s)	177, 262, 582, 617
BspEI	TCCGGA	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	107, 267
BspPI	GGATC	3 cut(s)	260, 273, 279
BspTNI	GGTCTC	1 cut(s)	730
BsrI	ACTGG	3 cut(s)	195, 618, 651
BssECI	CCNNGG	4 cut(s)	132, 142, 218, 554
BssMI	GATC	3 cut(s)	81, 265, 271
BssT1I	CCWWGG	2 cut(s)	142, 218
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	2 cut(s)	66, 443
BstAPI	GCANNNNNTGC	1 cut(s)	66
BstC8I	GCNNGC	3 cut(s)	260, 492, 580
BstDEI	CTNAG	1 cut(s)	745
BstDSI	CCRYGG	1 cut(s)	132
BstF5I	GGATG	2 cut(s)	10, 289
BstFNI	CGCG	1 cut(s)	352
BstHHI	GCGC	3 cut(s)	216, 352, 708
BstKTI	GATC	3 cut(s)	84, 268, 274
BstMAI	GTCTC	4 cut(s)	201, 346, 432, 730
BstMBI	GATC	3 cut(s)	81, 265, 271
BstMWI	GCNNNNNNNGC	5 cut(s)	66, 455, 487, 579, 703
BstNI	CCWGG	1 cut(s)	555
BstPAI	GACNNNNGTC	1 cut(s)	193
BstSCI	CCNGG	2 cut(s)	553, 739
BstSLI	GKGCMC	1 cut(s)	539
BstUI	CGCG	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	22, 198
BstV2I	GAAGAC	1 cut(s)	159
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	177, 262, 582, 617
BtgI	CCRYGG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	10, 289
BtsIMutI	CAGTG	2 cut(s)	625, 658
Cac8I	GCNNGC	3 cut(s)	260, 492, 580
CfoI	GCGC	3 cut(s)	216, 352, 708
Cfr13I	GGNCC	5 cut(s)	105, 139, 260, 404, 462
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	3 cut(s)	76, 242, 466
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	1 cut(s)	745
DpnI	GATC	3 cut(s)	83, 267, 273
DpnII	GATC	3 cut(s)	81, 265, 271
DraIII	CACNNNGTG	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	580
Eco130I	CCWWGG	2 cut(s)	142, 218
Eco31I	GGTCTC	1 cut(s)	730
Eco47I	GGWCC	4 cut(s)	105, 139, 404, 462
Eco57I	CTGAAG	1 cut(s)	752
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	553
EcoT14I	CCWWGG	2 cut(s)	142, 218
ErhI	CCWWGG	2 cut(s)	142, 218
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	3 cut(s)	79, 245, 469
FaiI	YATR	6 cut(s)	11, 26, 77, 243, 467, 710
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	3 cut(s)	75, 241, 465
FauI	CCCGC	1 cut(s)	251
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	4 cut(s)	36, 212, 353, 488
FokI	GGATG	2 cut(s)	17, 296
Fsp4HI	GCNGC	4 cut(s)	36, 212, 353, 488
FspBI	CTAG	6 cut(s)	219, 317, 362, 378, 528, 751
GlaI	GCGC	3 cut(s)	215, 351, 707
GluI	GCNGC	4 cut(s)	36, 212, 353, 488
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	2 cut(s)	537, 634
HaeIII	GGCC	4 cut(s)	177, 262, 582, 617
HapII	CCGG	6 cut(s)	174, 263, 269, 347, 543, 740
HhaI	GCGC	3 cut(s)	216, 352, 708
Hin1II	CATG	3 cut(s)	79, 245, 469
Hin6I	GCGC	3 cut(s)	214, 350, 706
HinP1I	GCGC	3 cut(s)	214, 350, 706
HinfI	GANTC	4 cut(s)	120, 335, 369, 661
HpaII	CCGG	6 cut(s)	174, 263, 269, 347, 543, 740
HphI	GGTGA	2 cut(s)	455, 577
Hpy166II	GTNNAC	2 cut(s)	127, 311
Hpy188I	TCNGA	5 cut(s)	105, 114, 188, 276, 422
Hpy188III	TCNNGA	2 cut(s)	269, 665
Hpy8I	GTNNAC	2 cut(s)	127, 311
Hpy99I	CGWCG	2 cut(s)	205, 501
HpyAV	CCTTC	2 cut(s)	119, 599
HpyCH4III	ACNGT	2 cut(s)	66, 443
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	69, 296, 521
HpyF10VI	GCNNNNNNNGC	5 cut(s)	66, 455, 487, 579, 703
HpyF3I	CTNAG	1 cut(s)	745
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	3 cut(s)	79, 245, 469
HspAI	GCGC	3 cut(s)	214, 350, 706
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	81, 265, 271
LmnI	GCTCC	2 cut(s)	72, 422
Lsp1109I	GCAGC	2 cut(s)	22, 198
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	6 cut(s)	219, 317, 362, 378, 528, 751
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	3 cut(s)	83, 267, 273
MboI	GATC	3 cut(s)	81, 265, 271
MboII	GAAGA	2 cut(s)	159, 745
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	3 cut(s)	162, 427, 539
MlsI	TGGCCA	1 cut(s)	582
MluNI	TGGCCA	1 cut(s)	582
MlyI	GAGTC	1 cut(s)	129
Mox20I	TGGCCA	1 cut(s)	582
MroI	TCCGGA	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	582
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	713
Msp20I	TGGCCA	1 cut(s)	582
MspI	CCGG	6 cut(s)	174, 263, 269, 347, 543, 740
MspR9I	CCNGG	2 cut(s)	555, 741
MvaI	CCWGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	352
MwoI	GCNNNNNNNGC	5 cut(s)	66, 455, 487, 579, 703
NciI	CCSGG	1 cut(s)	741
NdeII	GATC	3 cut(s)	81, 265, 271
NlaIII	CATG	3 cut(s)	79, 245, 469
NlaIV	GGNNCC	2 cut(s)	107, 267
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	335, 369, 661
PkrI	GCNGC	4 cut(s)	37, 213, 354, 489
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PpuMI	RGGWCCY	1 cut(s)	139
PshAI	GACNNNNGTC	1 cut(s)	193
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	553
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	107, 267
PspPI	GGNCC	5 cut(s)	105, 139, 260, 404, 462
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	4 cut(s)	36, 212, 353, 488
Sau3AI	GATC	3 cut(s)	81, 265, 271
Sau96I	GGNCC	5 cut(s)	105, 139, 260, 404, 462
ScaI	AGTACT	1 cut(s)	550
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	555, 741
SduI	GDGCHC	3 cut(s)	162, 427, 539
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	4 cut(s)	105, 139, 404, 462
SmiMI	CAYNNNNRTG	1 cut(s)	713
SsiI	CCGC	6 cut(s)	224, 258, 314, 352, 488, 697
SspMI	CTAG	6 cut(s)	219, 317, 362, 378, 528, 751
StyD4I	CCNGG	2 cut(s)	553, 739
StyI	CCWWGG	2 cut(s)	142, 218
TaaI	ACNGT	2 cut(s)	66, 443
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	41
TaqII	GACCGA	2 cut(s)	170, 450
TatI	WGTACW	1 cut(s)	548
TauI	GCSGC	2 cut(s)	355, 490
TfiI	GAWTC	3 cut(s)	335, 369, 661
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	625, 658
TseI	GCWGC	2 cut(s)	35, 211
TspDTI	ATGAA	1 cut(s)	171
TspGWI	ACGGA	2 cut(s)	121, 189
TspRI	CASTG	2 cut(s)	625, 658
VpaK11BI	GGWCC	4 cut(s)	105, 139, 404, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmaJI	CCTAGG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	6 cut(s)	219, 317, 362, 378, 528, 751
ZrmI	AGTACT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.