FvH4_7g21700

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0002895
Physical Location & Seq
Forward (+)
17288849 .. 17290668
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21700.t1

Sequence Viewer

Length: 732 bp
ATGGTCTCCACCTCAGTCTCGATGATGCTCTGGACACTTTTCATAATGGTTGTAGTCGCCGTTCTGGTCACCATGGTCAAGAAGAACAAGAAAATCCCCATCCTGACCAAGCCAGAGGACAACACCTCATATAAGGATGCAAAGGAGAATACGTACAAGAAAATTGACAAGAAGAAACCTCAAGTCTATTTGGAGATAGGAATTGATGGAACCAACAAGGGACGGATTATAATTGAGCTATTTGATCATCTGGTGCCAGGTACAGCTGAAAATTTTAGGAATCTCTGTAAAGGGTTCAACAAACCTGGAAGTCCAGGACAAGTCCTCCACTATAAAGGATCGAAATTTCATCTCATCAATAAAGGACTTGCAGCCCAAGGTGGCGACTTTACCTCCGGTGATGGCACAGGTGGAGGGTATGCTACACTATCCGGAGATAGATTTGTTGAAGTTACTACCGATGCAAACATGGGGAAGCATGCTGAACCCTACTTAGTGTCAATGGCAATGCATGGTGAGCAGTTGGCAATTGGATCACAGTTTTTCATCACGTTTTCTAGTTTACCTCATCTCGATCGGGAACACGTTGTTTTTGGCAAGGTTGTGGAAGGATTCAAGGTGCTCTCTGAGATGGAGGACGTCTTAACAACTTTAGGAAAACCAAAAGTACCCGTAGTCATTGTCGAATGTGGAGAAATTATGCAAGAGATAGATGCTGGGAATAACCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

244

Amino Acids

26.61

Weight (kDa)

7.06

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 71 - 231 2.8e-35 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AatII GACGTC 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 253
AccIII TCCGGA 1 cut(s) 431
AclWI GGATC 2 cut(s) 346, 541
AcsI RAATTY 2 cut(s) 271, 344
AcyI GRCGYC 1 cut(s) 639
AfaI GTAC 3 cut(s) 155, 262, 669
AflIII ACRYGT 1 cut(s) 583
AgsI TTSAA 3 cut(s) 298, 449, 616
AjnI CCWGG 3 cut(s) 256, 304, 313
AluBI AGCT 2 cut(s) 238, 266
AluI AGCT 2 cut(s) 238, 266
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 2 cut(s) 10, 22
AlwI GGATC 2 cut(s) 346, 541
Aor13HI TCCGGA 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 371
ApoI RAATTY 2 cut(s) 271, 344
AsuHPI GGTGA 3 cut(s) 61, 410, 527
BanI GGYRCC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 1 cut(s) 383
BccI CCATC 4 cut(s) 107, 200, 395, 625
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 3 cut(s) 258, 306, 315
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 2 cut(s) 10, 22
BfaI CTAG 1 cut(s) 558
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 3 cut(s) 258, 306, 315
BmiI GGNNCC 2 cut(s) 211, 255
BmrFI CCNGG 3 cut(s) 258, 306, 315
BmsI GCATC 4 cut(s) 15, 127, 451, 703
BpuEI CTTGAG 1 cut(s) 165
BsaAI YACGTR 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 72, 376
BsaWI WCCGGW 2 cut(s) 395, 431
BsaXI ACNNNNNCTCC 6 cut(s) 137, 167, 309, 339, 377, 407
Bse3DI GCAATG 1 cut(s) 513
BseAI TCCGGA 1 cut(s) 431
BseBI CCWGG 3 cut(s) 258, 306, 315
BseDI CCNNGG 2 cut(s) 72, 376
BseGI GGATG 2 cut(s) 99, 142
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 2 cut(s) 27, 618
BseXI GCAGC 1 cut(s) 383
BseYI CCCAGC 1 cut(s) 716
Bsh1285I CGRYCG 1 cut(s) 577
BshNI GGYRCC 1 cut(s) 253
BsiEI CGRYCG 1 cut(s) 577
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 2 cut(s) 396, 432
BslFI GGGAC 1 cut(s) 234
BsmAI GTCTC 2 cut(s) 10, 22
BsmFI GGGAC 1 cut(s) 234
Bso31I GGTCTC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 624
Bsp13I TCCGGA 1 cut(s) 431
Bsp143I GATC 4 cut(s) 244, 338, 533, 574
Bsp19I CCATGG 1 cut(s) 72
BspCNI CTCAG 2 cut(s) 26, 619
BspEI TCCGGA 1 cut(s) 431
BspLI GGNNCC 2 cut(s) 211, 255
BspPI GGATC 2 cut(s) 346, 541
BspT107I GGYRCC 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 513
BssECI CCNNGG 2 cut(s) 72, 376
BssMI GATC 4 cut(s) 244, 338, 533, 574
BssNI GRCGYC 1 cut(s) 639
BssT1I CCWWGG 2 cut(s) 72, 376
Bst2UI CCWGG 3 cut(s) 258, 306, 315
Bst4CI ACNGT 1 cut(s) 540
BstACI GRCGYC 1 cut(s) 639
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 13, 493, 627
BstDSI CCRYGG 1 cut(s) 72
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 2 cut(s) 99, 142
BstKTI GATC 4 cut(s) 247, 341, 536, 577
BstMAI GTCTC 2 cut(s) 10, 22
BstMBI GATC 4 cut(s) 244, 338, 533, 574
BstMCI CGRYCG 1 cut(s) 577
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstNI CCWGG 3 cut(s) 258, 306, 315
BstNSI RCATGY 1 cut(s) 482
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 3 cut(s) 256, 304, 313
BstSNI TACGTA 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 383
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 99, 142
Cac8I GCNNGC 1 cut(s) 480
Csp6I GTAC 3 cut(s) 154, 261, 668
CviAII CATG 4 cut(s) 73, 469, 479, 512
CviJI RGCY 4 cut(s) 112, 238, 266, 374
CviKI_1 RGCY 4 cut(s) 112, 238, 266, 374
CviQI GTAC 3 cut(s) 154, 261, 668
DdeI CTNAG 3 cut(s) 13, 493, 627
DpnI GATC 4 cut(s) 246, 340, 535, 576
DpnII GATC 4 cut(s) 244, 338, 533, 574
Eco105I TACGTA 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 72, 376
Eco31I GGTCTC 1 cut(s) 10
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 3 cut(s) 256, 304, 313
EcoT14I CCWWGG 2 cut(s) 72, 376
EcoT22I ATGCAT 1 cut(s) 513
ErhI CCWWGG 2 cut(s) 72, 376
FaeI CATG 4 cut(s) 76, 472, 482, 515
FaqI GGGAC 1 cut(s) 234
FatI CATG 4 cut(s) 72, 468, 478, 511
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 2 cut(s) 86, 149
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 1 cut(s) 558
GluI GCNGC 1 cut(s) 372
GsaI CCCAGC 1 cut(s) 720
HapII CCGG 2 cut(s) 396, 432
Hin1I GRCGYC 1 cut(s) 639
Hin1II CATG 4 cut(s) 76, 472, 482, 515
HinfI GANTC 2 cut(s) 280, 612
HpaII CCGG 2 cut(s) 396, 432
HphI GGTGA 3 cut(s) 61, 410, 527
Hpy166II GTNNAC 1 cut(s) 563
Hpy188I TCNGA 1 cut(s) 628
Hpy188III TCNNGA 7 cut(s) 19, 31, 79, 103, 432, 572, 578
Hpy8I GTNNAC 1 cut(s) 563
HpyAV CCTTC 1 cut(s) 602
HpyCH4III ACNGT 1 cut(s) 540
HpyCH4IV ACGT 4 cut(s) 152, 551, 585, 639
HpyCH4V TGCA 5 cut(s) 140, 371, 464, 511, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 3 cut(s) 13, 493, 627
HpySE526I ACGT 4 cut(s) 152, 551, 585, 639
Hsp92I GRCGYC 1 cut(s) 639
Hsp92II CATG 4 cut(s) 76, 472, 482, 515
Kpn2I TCCGGA 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 4 cut(s) 244, 338, 533, 574
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 4 cut(s) 15, 127, 451, 703
MaeI CTAG 1 cut(s) 558
MaeII ACGT 4 cut(s) 152, 551, 585, 639
MaeIII GTNAC 2 cut(s) 67, 451
MalI GATC 4 cut(s) 246, 340, 535, 576
MboI GATC 4 cut(s) 244, 338, 533, 574
MboII GAAGA 2 cut(s) 94, 184
MfeI CAATTG 1 cut(s) 528
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 7 cut(s) 162, 201, 231, 271, 344, 528, 696
MnlI CCTC 9 cut(s) 22, 109, 136, 189, 335, 403, 407, 576, 628
Mph1103I ATGCAT 1 cut(s) 513
MroI TCCGGA 1 cut(s) 431
MseI TTAA 2 cut(s) 644, 730
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 2 cut(s) 396, 432
MspR9I CCNGG 3 cut(s) 258, 306, 315
MunI CAATTG 1 cut(s) 528
MvaI CCWGG 3 cut(s) 258, 306, 315
MwoI GCNNNNNNNGC 1 cut(s) 517
NcoI CCATGG 1 cut(s) 72
NdeII GATC 4 cut(s) 244, 338, 533, 574
NlaIII CATG 4 cut(s) 76, 472, 482, 515
NlaIV GGNNCC 2 cut(s) 211, 255
NmuCI GTSAC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 513
NspI RCATGY 1 cut(s) 482
PaeI GCATGC 1 cut(s) 482
PfeI GAWTC 2 cut(s) 280, 612
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 1 cut(s) 373
Ple19I CGATCG 1 cut(s) 577
Ppu21I YACGTR 1 cut(s) 153
PsiI TTATAA 1 cut(s) 230
Psp6I CCWGG 3 cut(s) 256, 304, 313
PspEI GGTNACC 1 cut(s) 67
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 3 cut(s) 256, 304, 313
PspN4I GGNNCC 2 cut(s) 211, 255
PsrI GAACNNNNNNTAC 2 cut(s) 45, 77
PvuI CGATCG 1 cut(s) 577
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 3 cut(s) 155, 262, 669
RsaNI GTAC 3 cut(s) 154, 261, 668
SaqAI TTAA 2 cut(s) 644, 730
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 4 cut(s) 244, 338, 533, 574
ScrFI CCNGG 3 cut(s) 258, 306, 315
SduI GDGCHC 1 cut(s) 624
SfaNI GCATC 4 cut(s) 15, 127, 451, 703
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SnaBI TACGTA 1 cut(s) 153
SphI GCATGC 1 cut(s) 482
Sse9I AATT 7 cut(s) 162, 201, 231, 271, 344, 528, 696
SspMI CTAG 1 cut(s) 558
StyD4I CCNGG 3 cut(s) 256, 304, 313
StyI CCWWGG 2 cut(s) 72, 376
TaaI ACNGT 1 cut(s) 540
TaiI ACGT 4 cut(s) 155, 554, 588, 642
TaqI TCGA 4 cut(s) 20, 341, 573, 684
TasI AATT 7 cut(s) 162, 201, 231, 271, 344, 528, 696
TfiI GAWTC 2 cut(s) 280, 612
Tru1I TTAA 2 cut(s) 644, 730
Tru9I TTAA 2 cut(s) 644, 730
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 3 cut(s) 31, 338, 535
TspGWI ACGGA 1 cut(s) 238
XapI RAATTY 2 cut(s) 271, 344
XceI RCATGY 1 cut(s) 482
XspI CTAG 1 cut(s) 558
ZraI GACGTC 1 cut(s) 640
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.