Rh1DG349500

peptidyl-prolyl cis-trans isomerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002895
Physical Location & Seq
Reverse (-)
57448037 .. 57463901
15865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG349500.1

Sequence Viewer

Length: 1011 bp
ATGTCAAATTATGACGGTAATGTGGACTTTAACTATGAGGACATTGACTTGGACAATGTAAACCAATCACAGCTTCCCAACAATGTGCCTTTTGATGATAGTGAAACACAAGATGTAGGAGGTCTGTATAATGCTCAAGTTGAAGTCAATGAAAATGTCGAAGTCAATGTAAGTTGTACGAAAAAGTCAAGAGGTCCAAATATTATTCATTGGGGAGAAGATGGAGTTAGAGAAAGAATTAAGTGGGACAAGTTTGGAGCGCCTTTGTGGCCGAGAAAGAAGTGTGCACAATTCTCAAATTTTATTGGGTCTTTAGCTGCTGATGGTGGGTTCTATCCTATCAATGTTAGTGATTGGTGTCACTTGAAAAGTGAGAGTCATAAAAGGGCATGGGAACGGGTGAAGGATCTGGATCAGAAAGCAAACAGAAGACAGATCTTAATCAATCAATCTGATTGTACCTGGTTGCAACTTCTATCAGTAGTTGTAAGTCAGATGGAAACTAAAGAACAAAAAGGTCTTAACATAACTGTAAAAGATTCTGCTTCTGTCTCTGGAAAATCACCACATCCTACACGTACTCTCCACTGGTACCTGTGGTCTACGCAAAAATGTTGGGACGTGCTCCATCTCCTTAAGTATATCGATCCAATCCACAACCTTTCCAAAGAAAACGTGTCTCCTAAAAAGGCATTTGCTATGAAATTCGGTGAGATGACGATAGTAGCCTGTACTGATGTAGAGATAGGGAAGCGTGATGAACCATATCTACTGTCCATGGCAAACCATGACAAGATATTGACAATTGGATCTCAGTTCTTCATTACATTCTCTAGTTTGACTCATCTCAACGGGAGACACATTGTCTTTGGCAAGGTTGTGGATGGGATCGATATACTTATGGAGATGGAGCACGTCCCAACATTTTTGGGTAGACCACAGGTACCAGTGGAGATTGTAGGATTTGGTGATTTTCCAGAGATAGAAGTAGGCATAGTGACGGACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KIAA1430 Pro_isomerase

Protein Analysis

336

Amino Acids

38.13

Weight (kDa)

5.57

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 250 - 320 7e-16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 591, 943
AccB1I GGYRCC 2 cut(s) 591, 943
AccI GTMKAC 2 cut(s) 602, 934
AclWI GGATC 5 cut(s) 414, 420, 641, 817, 896
AcoI YGGCCR 1 cut(s) 269
AcsI RAATTY 2 cut(s) 298, 704
AfaI GTAC 6 cut(s) 178, 460, 580, 593, 733, 945
AflII CTTAAG 1 cut(s) 635
AflIII ACRYGT 2 cut(s) 575, 675
AgsI TTSAA 2 cut(s) 143, 367
AhdI GACNNNNNGTC 1 cut(s) 863
AjiI CACGTC 2 cut(s) 622, 916
AjnI CCWGG 1 cut(s) 461
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 2 cut(s) 73, 317
AluI AGCT 2 cut(s) 73, 317
Alw21I GWGCWC 3 cut(s) 289, 627, 915
Alw26I GTCTC 3 cut(s) 556, 684, 850
Alw44I GTGCAC 1 cut(s) 285
AlwI GGATC 5 cut(s) 414, 420, 641, 817, 896
AoxI GGCC 1 cut(s) 269
ApaLI GTGCAC 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 2 cut(s) 298, 704
Asp718I GGTACC 2 cut(s) 591, 943
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 4 cut(s) 412, 555, 722, 980
AvaII GGWCC 1 cut(s) 194
BaeGI GKGCMC 1 cut(s) 289
BanI GGYRCC 2 cut(s) 591, 943
BbsI GAAGAC 1 cut(s) 436
Bbv12I GWGCWC 3 cut(s) 289, 627, 915
BbvI GCAGC 1 cut(s) 304
BccI CCATC 6 cut(s) 215, 317, 490, 636, 878, 901
BciT130I CCWGG 1 cut(s) 463
BcoDI GTCTC 3 cut(s) 556, 684, 850
BfaI CTAG 1 cut(s) 834
BfoI RGCGCY 1 cut(s) 263
BfrI CTTAAG 1 cut(s) 635
BglI GCCNNNNNGGC 1 cut(s) 268
BglII AGATCT 1 cut(s) 435
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 1 cut(s) 463
Bme18I GGWCC 1 cut(s) 194
BmeRI GACNNNNNGTC 1 cut(s) 863
BmgBI CACGTC 2 cut(s) 622, 916
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 593, 945
BmrFI CCNGG 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 436
BpuEI CTTGAG 1 cut(s) 120
Bsa29I ATCGAT 2 cut(s) 645, 891
BsaAI YACGTR 1 cut(s) 578
BsaBI GATNNNNATC 2 cut(s) 411, 440
BsaJI CCNNGG 1 cut(s) 777
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bse1I ACTGG 2 cut(s) 593, 947
Bse8I GATNNNNATC 2 cut(s) 411, 440
BseBI CCWGG 1 cut(s) 463
BseCI ATCGAT 2 cut(s) 645, 891
BseDI CCNNGG 1 cut(s) 777
BseGI GGATG 2 cut(s) 568, 889
BseJI GATNNNNATC 2 cut(s) 411, 440
BseMII CTCAG 1 cut(s) 827
BseNI ACTGG 2 cut(s) 593, 947
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 1 cut(s) 271
BshNI GGYRCC 2 cut(s) 591, 943
BshVI ATCGAT 2 cut(s) 645, 891
BsiHKAI GWGCWC 3 cut(s) 289, 627, 915
BslFI GGGAC 3 cut(s) 260, 632, 902
BsmAI GTCTC 3 cut(s) 556, 684, 850
BsmFI GGGAC 3 cut(s) 260, 632, 902
BsnI GGCC 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 289, 627, 915
Bsp143I GATC 6 cut(s) 406, 412, 435, 646, 809, 888
Bsp19I CCATGG 1 cut(s) 777
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 826
BspDI ATCGAT 2 cut(s) 645, 891
BspLI GGNNCC 2 cut(s) 593, 945
BspPI GGATC 5 cut(s) 414, 420, 641, 817, 896
BspT107I GGYRCC 2 cut(s) 591, 943
BspTI CTTAAG 1 cut(s) 635
BsrI ACTGG 2 cut(s) 593, 947
BssECI CCNNGG 1 cut(s) 777
BssMI GATC 6 cut(s) 406, 412, 435, 646, 809, 888
BssT1I CCWWGG 1 cut(s) 777
Bst2UI CCWGG 1 cut(s) 463
Bst4CI ACNGT 3 cut(s) 17, 532, 774
BstAFI CTTAAG 1 cut(s) 635
BstBAI YACGTR 1 cut(s) 578
BstDEI CTNAG 1 cut(s) 813
BstDSI CCRYGG 1 cut(s) 777
BstF5I GGATG 2 cut(s) 568, 889
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 6 cut(s) 409, 415, 438, 649, 812, 891
BstMAI GTCTC 3 cut(s) 556, 684, 850
BstMBI GATC 6 cut(s) 406, 412, 435, 646, 809, 888
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 463
BstSCI CCNGG 1 cut(s) 461
BstSLI GKGCMC 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 436
BstX2I RGATCY 3 cut(s) 406, 435, 809
BstYI RGATCY 3 cut(s) 406, 435, 809
Bsu15I ATCGAT 2 cut(s) 645, 891
BsuRI GGCC 1 cut(s) 271
BsuTUI ATCGAT 2 cut(s) 645, 891
BtgI CCRYGG 1 cut(s) 777
BtrI CACGTC 2 cut(s) 622, 916
BtsCI GGATG 2 cut(s) 568, 889
BtsIMutI CAGTG 2 cut(s) 586, 954
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 194
ClaI ATCGAT 2 cut(s) 645, 891
CsiI ACCWGGT 1 cut(s) 461
Csp6I GTAC 6 cut(s) 177, 459, 579, 592, 732, 944
CviAII CATG 3 cut(s) 390, 778, 788
CviJI RGCY 4 cut(s) 73, 271, 317, 728
CviKI_1 RGCY 4 cut(s) 73, 271, 317, 728
CviQI GTAC 6 cut(s) 177, 459, 579, 592, 732, 944
DdeI CTNAG 1 cut(s) 813
DpnI GATC 6 cut(s) 408, 414, 437, 648, 811, 890
DpnII GATC 6 cut(s) 406, 412, 435, 646, 809, 888
DriI GACNNNNNGTC 1 cut(s) 863
EaeI YGGCCR 1 cut(s) 269
Eam1105I GACNNNNNGTC 1 cut(s) 863
Eco130I CCWWGG 1 cut(s) 777
Eco47I GGWCC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 461
EcoT14I CCWWGG 1 cut(s) 777
ErhI CCWWGG 1 cut(s) 777
FaeI CATG 3 cut(s) 393, 781, 791
FaqI GGGAC 3 cut(s) 260, 632, 902
FatI CATG 3 cut(s) 389, 777, 787
FblI GTMKAC 2 cut(s) 602, 934
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 555, 896
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 834
GlaI GCGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 1 cut(s) 271
HhaI GCGC 1 cut(s) 262
Hin1II CATG 3 cut(s) 393, 781, 791
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 3 cut(s) 376, 539, 841
HphI GGTGA 4 cut(s) 412, 555, 722, 980
Hpy166II GTNNAC 5 cut(s) 25, 61, 287, 603, 935
Hpy188I TCNGA 3 cut(s) 417, 454, 495
Hpy188III TCNNGA 4 cut(s) 189, 410, 555, 977
Hpy8I GTNNAC 5 cut(s) 25, 61, 287, 603, 935
HpyAV CCTTC 1 cut(s) 397
HpyCH4III ACNGT 3 cut(s) 17, 532, 774
HpyCH4IV ACGT 4 cut(s) 577, 621, 675, 915
HpyCH4V TGCA 2 cut(s) 287, 469
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpyF3I CTNAG 1 cut(s) 813
HpySE526I ACGT 4 cut(s) 577, 621, 675, 915
Hsp92II CATG 3 cut(s) 393, 781, 791
HspAI GCGC 1 cut(s) 260
KpnI GGTACC 2 cut(s) 595, 947
Kzo9I GATC 6 cut(s) 406, 412, 435, 646, 809, 888
LmnI GCTCC 3 cut(s) 257, 630, 910
Lsp1109I GCAGC 1 cut(s) 304
MabI ACCWGGT 1 cut(s) 461
MaeI CTAG 1 cut(s) 834
MaeII ACGT 4 cut(s) 577, 621, 675, 915
MaeIII GTNAC 2 cut(s) 359, 997
MalI GATC 6 cut(s) 408, 414, 437, 648, 811, 890
MboI GATC 6 cut(s) 406, 412, 435, 646, 809, 888
MboII GAAGA 3 cut(s) 230, 441, 811
MfeI CAATTG 1 cut(s) 804
MflI RGATCY 3 cut(s) 406, 435, 809
MhlI GDGCHC 3 cut(s) 289, 627, 915
MluCI AATT 6 cut(s) 7, 237, 290, 298, 704, 804
MlyI GAGTC 2 cut(s) 385, 835
MnlI CCTC 3 cut(s) 31, 113, 185
MseI TTAA 5 cut(s) 30, 240, 440, 522, 636
MspCI CTTAAG 1 cut(s) 635
MspR9I CCNGG 1 cut(s) 463
MunI CAATTG 1 cut(s) 804
MvaI CCWGG 1 cut(s) 463
MwoI GCNNNNNNNGC 1 cut(s) 268
NcoI CCATGG 1 cut(s) 777
NdeII GATC 6 cut(s) 406, 412, 435, 646, 809, 888
NlaIII CATG 3 cut(s) 393, 781, 791
NlaIV GGNNCC 2 cut(s) 593, 945
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 2 cut(s) 359, 997
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 2 cut(s) 384, 835
PpsI GAGTC 2 cut(s) 384, 835
Ppu21I YACGTR 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 461
PspGI CCWGG 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 593, 945
PspPI GGNCC 1 cut(s) 194
PsrI GAACNNNNNNTAC 2 cut(s) 753, 785
PsuI RGATCY 3 cut(s) 406, 435, 809
RsaI GTAC 6 cut(s) 178, 460, 580, 593, 733, 945
RsaNI GTAC 6 cut(s) 177, 459, 579, 592, 732, 944
SaqAI TTAA 5 cut(s) 30, 240, 440, 522, 636
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 6 cut(s) 406, 412, 435, 646, 809, 888
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 2 cut(s) 385, 835
ScrFI CCNGG 1 cut(s) 463
SduI GDGCHC 3 cut(s) 289, 627, 915
SexAI ACCWGGT 1 cut(s) 461
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 2 cut(s) 135, 635
SmoI CTYRAG 2 cut(s) 135, 635
Sse9I AATT 6 cut(s) 7, 237, 290, 298, 704, 804
SspI AATATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 834
StyD4I CCNGG 1 cut(s) 461
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 3 cut(s) 17, 532, 774
TaiI ACGT 4 cut(s) 580, 624, 678, 918
TaqI TCGA 3 cut(s) 159, 645, 891
TasI AATT 6 cut(s) 7, 237, 290, 298, 704, 804
TatI WGTACW 1 cut(s) 731
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 5 cut(s) 30, 240, 440, 522, 636
Tru9I TTAA 5 cut(s) 30, 240, 440, 522, 636
TscAI CASTG 2 cut(s) 593, 954
TseFI GTSAC 2 cut(s) 359, 997
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 359, 997
TspDTI ATGAA 5 cut(s) 165, 197, 716, 774, 811
TspRI CASTG 2 cut(s) 593, 954
Vha464I CTTAAG 1 cut(s) 635
VneI GTGCAC 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 194
XapI RAATTY 2 cut(s) 298, 704
XmiI GTMKAC 2 cut(s) 602, 934
XspI CTAG 1 cut(s) 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.