Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Reverse (-)

16664724 .. 16667721

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCTGCACCGATTGTTGATGCGGAGTACTTGAAAGAGATCACTAAGGCTCGCCGTGAGCTCCGTTCTCTCATCGCGAACAAGAACTGTGCTCCTATCATGCTCCGATTGGCATGGCACGATGCTGGAACCTATGATGCTCAATCGAAGACCGGTGGACCTAATGGCTCTATCAGGAACGAAGAAGAGCACACTCATGGTGCCAACAGTGGTTTGAAGATCGCTCTCGATCTCTGTGAGGGCGTGAAAGCTAAGCATCCCAAAATCACATACGCAGACCTGTATCAGCTTGCTGGTGTGGTAGCAGTTGAGGTTACTGGTGGACCTGACATCGTGTTCGTTCCCGGGAGAAAGGATTCAAATGTCTGCCCCAAGGAAGGAAGACTTCCTGATGCCAAACAAGGTTTCCAACATCTCAGAGATGTCTTCTACCGCATGGGACTATCTGATAAGGATATTGTGGCACTCTCAGGGGGTCATACTCTGGGAAGGGCTCACCCGGAGAGGTCAGGCTTTGATGGACCATGGACCCAAGAGCCGCTGAAGTTTGACAACTCCTACTTCGTGGAACTGCTGAAAGGAGAATCAGAGGGCTTGTTGAAACTTCCAACTGACAAGACCTTATTGGAAGACCCGGAGTTCCGTCGTCTTGTTGAGCTTTATGCAAAGGATGAAGATGCATTCTTCAGAGACTACGCGGAATCGCACAAGAAACTCTCTGAGCTTGGTTTCAACCCAAACTCCTCAGCAGGCAAAGCAGTTGCAGACAGCACGATTCTGGCACAGAGTGCGTTCGGGGTTGCAGTTGCTGCTGCGGTTGTGGCATTTGGTTACTTTTACGAGATCCGGAAGAGGATGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

287

Amino Acids

31.57

Weight (kDa)

6.47

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	18 - 224	9.5e-48	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	200
AccII	CGCG	2 cut(s)	77, 698
AccIII	TCCGGA	1 cut(s)	846
AciI	CCGC	5 cut(s)	23, 433, 539, 698, 815
AclWI	GGATC	1 cut(s)	838
AcuI	CTGAAG	2 cut(s)	563, 670
AdeI	CACNNNGTG	1 cut(s)	788
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	5 cut(s)	34, 217, 360, 601, 733
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	5 cut(s)	61, 251, 289, 658, 724
AluI	AGCT	5 cut(s)	61, 251, 289, 658, 724
Alw21I	GWGCWC	3 cut(s)	63, 94, 192
Alw26I	GTCTC	1 cut(s)	684
AlwI	GGATC	1 cut(s)	838
AlwNI	CAGNNNCTG	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	344
Aor13HI	TCCGGA	1 cut(s)	846
ApeKI	GCWGC	3 cut(s)	5, 809, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	320, 352
AsiGI	ACCGGT	1 cut(s)	152
Asp700I	GAANNNNTTC	1 cut(s)	355
AspS9I	GGNCC	4 cut(s)	158, 323, 521, 528
AsuC2I	CCSGG	4 cut(s)	345, 346, 500, 635
AsuHPI	GGTGA	1 cut(s)	488
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	4 cut(s)	158, 323, 521, 528
BanI	GGYRCC	1 cut(s)	200
BanII	GRGCYC	2 cut(s)	63, 496
BbsI	GAAGAC	4 cut(s)	155, 388, 418, 636
Bbv12I	GWGCWC	3 cut(s)	63, 94, 192
BbvCI	CCTCAGC	1 cut(s)	745
BbvI	GCAGC	2 cut(s)	796, 799
BccI	CCATC	1 cut(s)	512
BceAI	ACGGC	1 cut(s)	39
BcnI	CCSGG	4 cut(s)	345, 346, 500, 635
BcoDI	GTCTC	1 cut(s)	684
BisI	GCNGC	4 cut(s)	6, 539, 810, 813
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	4 cut(s)	7, 540, 811, 814
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	4 cut(s)	345, 346, 500, 635
Bme18I	GGWCC	4 cut(s)	158, 323, 521, 528
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	4 cut(s)	158, 323, 521, 528
BmiI	GGNNCC	3 cut(s)	130, 202, 530
BmrFI	CCNGG	4 cut(s)	345, 346, 500, 635
BmsI	GCATC	6 cut(s)	10, 112, 127, 265, 382, 667
BpiI	GAAGAC	4 cut(s)	155, 388, 418, 636
Bpu10I	CCTNAGC	1 cut(s)	745
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	4 cut(s)	345, 346, 500, 635
BsaJI	CCNNGG	3 cut(s)	344, 372, 524
BsaWI	WCCGGW	2 cut(s)	152, 846
BsaXI	ACNNNNNCTCC	2 cut(s)	725, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	322
BseAI	TCCGGA	1 cut(s)	846
BseDI	CCNNGG	3 cut(s)	344, 372, 524
BseGI	GGATG	3 cut(s)	256, 676, 861
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMII	CTCAG	4 cut(s)	430, 483, 711, 759
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	733
BseXI	GCAGC	2 cut(s)	796, 799
Bsh1236I	CGCG	2 cut(s)	77, 698
BshNI	GGYRCC	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	152
BsiHKAI	GWGCWC	3 cut(s)	63, 94, 192
BsiHKCI	CYCGRG	1 cut(s)	344
BsiSI	CCGG	5 cut(s)	153, 345, 500, 635, 847
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	684
BsmFI	GGGAC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	680
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	4 cut(s)	63, 94, 192, 496
Bsp13I	TCCGGA	1 cut(s)	846
Bsp143I	GATC	4 cut(s)	39, 219, 229, 843
Bsp1720I	GCTNAGC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	524
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	5 cut(s)	23, 433, 539, 698, 815
BspCNI	CTCAG	4 cut(s)	429, 482, 712, 758
BspEI	TCCGGA	1 cut(s)	846
BspFNI	CGCG	2 cut(s)	77, 698
BspLI	GGNNCC	3 cut(s)	130, 202, 530
BspPI	GGATC	1 cut(s)	838
BspQI	GCTCTTC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	3 cut(s)	344, 372, 524
BssMI	GATC	4 cut(s)	39, 219, 229, 843
BssT1I	CCWWGG	2 cut(s)	372, 524
Bst4CI	ACNGT	2 cut(s)	89, 209
Bst6I	CTCTTC	2 cut(s)	180, 845
BstAPI	GCANNNNNTGC	2 cut(s)	788, 809
BstC8I	GCNNGC	3 cut(s)	52, 291, 751
BstDEI	CTNAG	6 cut(s)	45, 252, 416, 469, 720, 745
BstDSI	CCRYGG	1 cut(s)	524
BstF5I	GGATG	3 cut(s)	256, 676, 861
BstFNI	CGCG	2 cut(s)	77, 698
BstKTI	GATC	4 cut(s)	42, 222, 232, 846
BstMAI	GTCTC	1 cut(s)	684
BstMBI	GATC	4 cut(s)	39, 219, 229, 843
BstMWI	GCNNNNNNNGC	4 cut(s)	755, 788, 809, 821
BstSCI	CCNGG	4 cut(s)	343, 344, 498, 633
BstUI	CGCG	2 cut(s)	77, 698
BstV1I	GCAGC	2 cut(s)	796, 799
BstV2I	GAAGAC	4 cut(s)	155, 388, 418, 636
BstX2I	RGATCY	1 cut(s)	843
BstYI	RGATCY	1 cut(s)	843
BtgI	CCRYGG	1 cut(s)	524
BtgZI	GCGATG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	256, 676, 861
BtsIMutI	CAGTG	1 cut(s)	214
BtuMI	TCGCGA	1 cut(s)	77
Cac8I	GCNNGC	3 cut(s)	52, 291, 751
CaiI	CAGNNNCTG	1 cut(s)	809
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	4 cut(s)	158, 323, 521, 528
Cfr9I	CCCGGG	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	28
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	5 cut(s)	100, 114, 197, 436, 525
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	6 cut(s)	45, 252, 416, 469, 720, 745
DpnI	GATC	4 cut(s)	41, 221, 231, 845
DpnII	GATC	4 cut(s)	39, 219, 229, 843
DraIII	CACNNNGTG	1 cut(s)	788
Eam1104I	CTCTTC	2 cut(s)	180, 845
EarI	CTCTTC	2 cut(s)	180, 845
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	2 cut(s)	372, 524
Eco24I	GRGCYC	2 cut(s)	63, 496
Eco47I	GGWCC	4 cut(s)	158, 323, 521, 528
Eco53kI	GAGCTC	1 cut(s)	61
Eco57I	CTGAAG	2 cut(s)	563, 670
Eco88I	CYCGRG	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	372, 524
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	2 cut(s)	63, 496
ErhI	CCWWGG	2 cut(s)	372, 524
FaeI	CATG	5 cut(s)	103, 117, 200, 439, 528
FaiI	YATR	9 cut(s)	101, 115, 135, 198, 271, 437, 480, 526, 663
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	5 cut(s)	99, 113, 196, 435, 524
Fnu4HI	GCNGC	4 cut(s)	6, 539, 810, 813
FokI	GGATG	2 cut(s)	243, 683
FriOI	GRGCYC	2 cut(s)	63, 496
Fsp4HI	GCNGC	4 cut(s)	6, 539, 810, 813
GluI	GCNGC	4 cut(s)	6, 539, 810, 813
HapII	CCGG	5 cut(s)	153, 345, 500, 635, 847
Hin1II	CATG	5 cut(s)	103, 117, 200, 439, 528
HinfI	GANTC	4 cut(s)	356, 584, 701, 775
HpaII	CCGG	5 cut(s)	153, 345, 500, 635, 847
HphI	GGTGA	1 cut(s)	488
Hpy166II	GTNNAC	2 cut(s)	158, 323
Hpy188I	TCNGA	6 cut(s)	107, 419, 448, 589, 689, 721
Hpy188III	TCNNGA	5 cut(s)	76, 175, 227, 389, 847
Hpy8I	GTNNAC	2 cut(s)	158, 323
Hpy99I	CGWCG	1 cut(s)	648
HpyAV	CCTTC	2 cut(s)	371, 483
HpyCH4III	ACNGT	2 cut(s)	89, 209
HpyCH4V	TGCA	5 cut(s)	8, 665, 680, 764, 803
HpyF10VI	GCNNNNNNNGC	4 cut(s)	755, 788, 809, 821
HpyF3I	CTNAG	6 cut(s)	45, 252, 416, 469, 720, 745
Hsp92II	CATG	5 cut(s)	103, 117, 200, 439, 528
Kpn2I	TCCGGA	1 cut(s)	846
Kzo9I	GATC	4 cut(s)	39, 219, 229, 843
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	3 cut(s)	66, 97, 108
Lsp1109I	GCAGC	2 cut(s)	796, 799
LweI	GCATC	6 cut(s)	10, 112, 127, 265, 382, 667
MaeIII	GTNAC	2 cut(s)	313, 830
MalI	GATC	4 cut(s)	41, 221, 231, 845
MboI	GATC	4 cut(s)	39, 219, 229, 843
MflI	RGATCY	1 cut(s)	843
MhlI	GDGCHC	4 cut(s)	63, 94, 192, 496
MmeI	TCCRAC	2 cut(s)	433, 632
MnlI	CCTC	6 cut(s)	232, 304, 498, 583, 754, 846
Mph1103I	ATGCAT	1 cut(s)	682
MroI	TCCGGA	1 cut(s)	846
MroXI	GAANNNNTTC	1 cut(s)	355
MslI	CAYNNNNRTG	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	541
MspI	CCGG	5 cut(s)	153, 345, 500, 635, 847
MspR9I	CCNGG	4 cut(s)	345, 346, 500, 635
Mva1269I	GAATGC	1 cut(s)	680
MvnI	CGCG	2 cut(s)	77, 698
MwoI	GCNNNNNNNGC	4 cut(s)	755, 788, 809, 821
NciI	CCSGG	4 cut(s)	345, 346, 500, 635
NcoI	CCATGG	1 cut(s)	524
NdeII	GATC	4 cut(s)	39, 219, 229, 843
NlaIII	CATG	5 cut(s)	103, 117, 200, 439, 528
NlaIV	GGNNCC	3 cut(s)	130, 202, 530
NruI	TCGCGA	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	180
PctI	GAATGC	1 cut(s)	680
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	4 cut(s)	356, 584, 701, 775
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	4 cut(s)	7, 540, 811, 814
Psp124BI	GAGCTC	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	130, 202, 530
PspPI	GGNCC	4 cut(s)	158, 323, 521, 528
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	843
RruI	TCGCGA	1 cut(s)	77
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
RseI	CAYNNNNRTG	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	180
SatI	GCNGC	4 cut(s)	6, 539, 810, 813
Sau3AI	GATC	4 cut(s)	39, 219, 229, 843
Sau96I	GGNCC	4 cut(s)	158, 323, 521, 528
ScaI	AGTACT	1 cut(s)	29
ScrFI	CCNGG	4 cut(s)	345, 346, 500, 635
SduI	GDGCHC	4 cut(s)	63, 94, 192, 496
SfaNI	GCATC	6 cut(s)	10, 112, 127, 265, 382, 667
SinI	GGWCC	4 cut(s)	158, 323, 521, 528
SmaI	CCCGGG	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	195
SsiI	CCGC	5 cut(s)	23, 433, 539, 698, 815
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	4 cut(s)	343, 344, 498, 633
StyI	CCWWGG	2 cut(s)	372, 524
TaaI	ACNGT	2 cut(s)	89, 209
TaqI	TCGA	2 cut(s)	146, 228
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	541
TfiI	GAWTC	4 cut(s)	356, 584, 701, 775
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	3 cut(s)	5, 809, 812
TspDTI	ATGAA	1 cut(s)	687
TspGWI	ACGGA	2 cut(s)	53, 632
TspMI	CCCGGG	1 cut(s)	344
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	4 cut(s)	158, 323, 521, 528
XmaI	CCCGGG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	355
ZrmI	AGTACT	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.