Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003986

Physical Location & Seq

Genomic Coordinates Reverse (-)

14007715 .. 14010527

Gene Structure 2813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10600.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACATCGACGCTCGTTGACAAAGAGTATTTCAACGAAATCGACAAGGCTCGCCGCCATCTCCGCGCTCTCATTTACAGCAGAAGCTGCGCTCCGATCATGCTCCGCTTGGCGTGGCACGATGCTGGGACCTACGATGCCAAGTCGAAAACGGGTGGGCCGAATGGGTCGATTCGTAACGAGGAAGAGTACTCTCATGGTTCCAACAATGGCTTGAAGAAGGCTATTGATTTTTGCGAGGAAGTGAAGTCTAAGCATCCAAGGATTACATATGCAGATCTATACCAGCTTGCAGGTGTTGTTGCAGTTGAGGTCACTGGAGGCCCCGCCATTGATTTTTCTCCAGGCAGGAAGGATTCTAAAATTTCTCCTAAGGAAGGACGACTTCCAGATTCTAAACGAGGTGCACCACATTTGAGGGAAAAGTTCTATAGAATGGGGCTGTCTGACAAGGATATTGTTGCACTATCTGGGGGTCATACACTGGGAAGGGCACATCCAGACAGATCTGTCGAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004130 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005777 GO:0005778 GO:0005911 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016020 GO:0016209 GO:0016491 GO:0016684 GO:0016688 GO:0016999 GO:0017001 GO:0017144 GO:0030054 GO:0031090 GO:0031903 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0042579 GO:0042737 GO:0042743 GO:0042744 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051186 GO:0051187 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0072593 GO:0097237 GO:0098588 GO:0098754 GO:0098805 GO:0098869 GO:1901700 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00053 ko00480 map00053 map00480

Pfam Domains

Protein Families

peroxidase

Protein Analysis

174

Amino Acids

19.2

Weight (kDa)

9.18

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35000
fragaria_vesca	FvH4_1g11491 FvH4_2g01310
malus_domestica	MD05G1120800.v1.1 MD15G1242900.v1.1
prunus_persica	Prupe.7G171200_v2.0.a1 Prupe.8G164400_v2.0.a1 Prupe.8G164400_v2.0.a1
pyrus_communis	pycom05g11470 pycom10g10600
rosa_chinensis	RchiOBHm_Chr2g0099101 RchiOBHm_Chr6g0252051 RchiOBHm_Chr6g0252201
rosa_laevigata	RLG00000015403 RLG00000016848
rosa_multiflora	Rmu_ssc0000165.1_g000002
rosa_roxburghii	Rroxscaffold_2G00143440 Rroxscaffold_7G00216250
rosa_rugosa	Rorug02G0076700 Rorug05G0506000.1
rosa_samantha	Rh2AG125800 Rh2BG129100 Rh2CG130100 Rh2DG130500 Rh6AG019900 Rh6BG015300 Rh6CG011600 Rh6CG012300 Rh6DG013000 Rh6DG013600
rosa_wichuraiana	Rw2G009690 Rw6G000090 Rw6G001630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	284
AasI	GACNNNNNNGTC	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	284
AccII	CGCG	1 cut(s)	66
AciI	CCGC	4 cut(s)	55, 64, 106, 327
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	34, 217
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	87, 289
AluI	AGCT	2 cut(s)	87, 289
Alw21I	GWGCWC	1 cut(s)	409
Alw44I	GTGCAC	1 cut(s)	405
AlwNI	CAGNNNCTG	1 cut(s)	87
AoxI	GGCC	2 cut(s)	158, 322
ApaLI	GTGCAC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	1 cut(s)	363
AspLEI	GCGC	2 cut(s)	68, 92
AspS9I	GGNCC	3 cut(s)	129, 158, 323
AvaII	GGWCC	1 cut(s)	129
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	2 cut(s)	409, 496
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	66
BciT130I	CCWGG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	284
BglII	AGATCT	2 cut(s)	277, 506
BisI	GCNGC	2 cut(s)	55, 88
BlsI	GCNGC	2 cut(s)	56, 89
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	3 cut(s)	129, 158, 323
BmiI	GGNNCC	3 cut(s)	130, 202, 325
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	3 cut(s)	112, 127, 265
BmuI	ACTGGG	1 cut(s)	494
BpmI	CTGGAG	2 cut(s)	327, 339
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	2 cut(s)	322, 489
Bse21I	CCTNAGG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	256, 496
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseNI	ACTGG	2 cut(s)	322, 489
BseSI	GKGCMC	2 cut(s)	409, 496
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	125
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	160, 324
BsiHKAI	GWGCWC	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	160, 324
Bsp1286I	GDGCHC	2 cut(s)	409, 496
Bsp143I	GATC	3 cut(s)	96, 277, 506
BspACI	CCGC	4 cut(s)	55, 64, 106, 327
BspANI	GGCC	2 cut(s)	160, 324
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	3 cut(s)	130, 202, 325
BspMI	ACCTGC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	322, 489
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	3 cut(s)	96, 277, 506
BssT1I	CCWWGG	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	52, 291
BstDEI	CTNAG	2 cut(s)	252, 372
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	256, 496
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	68, 92
BstKTI	GATC	3 cut(s)	99, 280, 509
BstMBI	GATC	3 cut(s)	96, 277, 506
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 87
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	1 cut(s)	430
BstSLI	GKGCMC	2 cut(s)	409, 496
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	2 cut(s)	277, 506
BstYI	RGATCY	2 cut(s)	277, 506
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	160, 324
BtsCI	GGATG	2 cut(s)	256, 496
BtsIMutI	CAGTG	2 cut(s)	315, 482
BveI	ACCTGC	1 cut(s)	284
Cac8I	GCNNGC	2 cut(s)	52, 291
CaiI	CAGNNNCTG	1 cut(s)	87
CfoI	GCGC	2 cut(s)	68, 92
Cfr13I	GGNCC	3 cut(s)	129, 158, 323
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	2 cut(s)	100, 197
CviJI	RGCY	8 cut(s)	50, 87, 160, 213, 224, 289, 324, 442
CviKI_1	RGCY	8 cut(s)	50, 87, 160, 213, 224, 289, 324, 442
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	252, 372
DpnI	GATC	3 cut(s)	98, 279, 508
DpnII	GATC	3 cut(s)	96, 277, 506
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	129
Eco81I	CCTNAGG	1 cut(s)	372
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoO109I	RGGNCCY	2 cut(s)	129, 323
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	103, 200
FaiI	YATR	7 cut(s)	101, 198, 271, 273, 283, 432, 480
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	2 cut(s)	99, 196
FauI	CCCGC	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	55, 88
FokI	GGATG	2 cut(s)	243, 483
Fsp4HI	GCNGC	2 cut(s)	55, 88
GlaI	GCGC	2 cut(s)	67, 91
GluI	GCNGC	2 cut(s)	55, 88
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	2 cut(s)	327, 339
HaeIII	GGCC	2 cut(s)	160, 324
HgaI	GACGC	1 cut(s)	19
HhaI	GCGC	2 cut(s)	68, 92
Hin1II	CATG	2 cut(s)	103, 200
Hin6I	GCGC	2 cut(s)	66, 90
HinP1I	GCGC	2 cut(s)	66, 90
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	3 cut(s)	172, 356, 392
Hpy166II	GTNNAC	2 cut(s)	19, 407
Hpy188I	TCNGA	2 cut(s)	96, 448
Hpy188III	TCNNGA	2 cut(s)	389, 500
Hpy8I	GTNNAC	2 cut(s)	19, 407
Hpy99I	CGWCG	1 cut(s)	13
HpyAV	CCTTC	4 cut(s)	214, 346, 371, 483
HpyCH4V	TGCA	5 cut(s)	275, 293, 305, 407, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 87
HpyF3I	CTNAG	2 cut(s)	252, 372
Hsp92II	CATG	2 cut(s)	103, 200
HspAI	GCGC	2 cut(s)	66, 90
Kzo9I	GATC	3 cut(s)	96, 277, 506
LmnI	GCTCC	2 cut(s)	97, 108
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	3 cut(s)	112, 127, 265
MaeIII	GTNAC	2 cut(s)	176, 313
MalI	GATC	3 cut(s)	98, 279, 508
MboI	GATC	3 cut(s)	96, 277, 506
MboII	GAAGA	2 cut(s)	197, 229
MflI	RGATCY	2 cut(s)	277, 506
MhlI	GDGCHC	2 cut(s)	409, 496
MluCI	AATT	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	6 cut(s)	175, 232, 304, 314, 395, 411
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	63, 87
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	3 cut(s)	96, 277, 506
NlaIII	CATG	2 cut(s)	103, 200
NlaIV	GGNNCC	3 cut(s)	130, 202, 325
NmuCI	GTSAC	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	172, 356, 392
PkrI	GCNGC	2 cut(s)	56, 89
PpuMI	RGGWCCY	1 cut(s)	129
Psp5II	RGGWCCY	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	343
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	3 cut(s)	130, 202, 325
PspPI	GGNCC	3 cut(s)	129, 158, 323
PspPPI	RGGWCCY	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	277, 506
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SatI	GCNGC	2 cut(s)	55, 88
Sau3AI	GATC	3 cut(s)	96, 277, 506
Sau96I	GGNCC	3 cut(s)	129, 158, 323
ScaI	AGTACT	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	2 cut(s)	409, 496
SetI	ASST	6 cut(s)	89, 134, 291, 298, 315, 406
SfaNI	GCATC	3 cut(s)	112, 127, 265
SfcI	CTRYAG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	129
Sse9I	AATT	1 cut(s)	363
SsiI	CCGC	4 cut(s)	55, 64, 106, 327
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	260
TaqI	TCGA	5 cut(s)	8, 42, 146, 170, 513
TasI	AATT	1 cut(s)	363
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	3 cut(s)	172, 356, 392
TscAI	CASTG	2 cut(s)	322, 489
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	313
TspRI	CASTG	2 cut(s)	322, 489
VneI	GTGCAC	1 cut(s)	405
VpaK11BI	GGWCC	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.